Wall clock time and date at job start Mon Mar 30 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99698 * 2 1 4 4 C 1.53004 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47304 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47304 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47245 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 6 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.47392 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47269 * 300.00361 * 1 2 3 26 26 H 1.09006 * 109.46882 * 60.00008 * 1 2 3 27 27 H 1.09003 * 109.47274 * 60.00192 * 3 2 1 28 28 H 1.08996 * 109.47465 * 299.99791 * 3 2 1 29 29 H 1.09003 * 109.46885 * 59.99976 * 4 3 2 30 30 H 1.09000 * 109.46800 * 300.00716 * 4 3 2 31 31 H 1.09003 * 109.47240 * 60.00107 * 5 4 3 32 32 H 1.08996 * 109.47289 * 299.99835 * 5 4 3 33 33 H 1.09003 * 109.46885 * 59.99889 * 6 5 4 34 34 H 1.09000 * 109.46800 * 300.00630 * 6 5 4 35 35 H 0.97004 * 120.00039 * 359.97438 * 7 6 5 36 36 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 37 37 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5824 0.0013 6 6 5.6830 2.4617 0.0013 7 7 6.2788 3.8000 0.0025 8 6 7.6192 3.9409 0.0022 9 8 8.3336 2.9576 0.0014 10 6 8.2207 5.2919 0.0029 11 6 7.3988 6.4243 0.0033 12 6 7.9540 7.6912 0.0034 13 6 9.3219 7.8530 0.0036 14 6 10.1648 6.7258 0.0032 15 6 11.5697 6.8885 0.0040 16 1 12.0080 7.7966 0.3909 17 6 12.3920 5.8730 -0.4967 18 7 11.8889 4.9457 -1.2704 19 14 14.2081 5.8413 -0.0605 20 1 14.4199 4.9564 1.1132 21 1 14.9858 5.3258 -1.2158 22 1 14.6623 7.2164 0.2680 23 6 9.6029 5.4378 0.0031 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 3.8357 3.1231 0.8913 32 1 3.8365 3.1236 -0.8887 33 1 6.0046 1.9212 -0.8890 34 1 6.0045 1.9203 0.8910 35 1 5.7086 4.5848 0.0028 36 1 6.3249 6.3085 0.0035 37 1 7.3109 8.5589 0.0041 38 1 9.7480 8.8454 0.0033 39 1 12.4589 4.2419 -1.6178 40 1 10.2412 4.5666 0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044570341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:17 Heat of formation + Delta-G solvation = -84.478196 kcal Electronic energy + Delta-G solvation = -20207.972794 eV Core-core repulsion = 16986.691203 eV Total energy + Delta-G solvation = -3221.281591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21637 -38.29556 -37.07128 -35.59252 -33.77622 -32.99433 -30.32195 -29.44149 -28.48755 -26.43056 -25.28883 -23.60650 -21.90528 -21.51076 -20.88343 -19.41711 -17.72052 -16.64315 -16.60709 -16.17826 -15.62203 -15.38044 -15.20250 -14.89669 -14.58738 -14.09286 -13.70077 -13.21493 -13.03206 -12.71443 -12.57330 -12.46256 -12.03497 -11.88478 -11.62763 -11.60423 -11.17450 -11.17034 -11.08797 -10.91177 -10.71693 -10.49112 -10.01462 -9.98715 -9.68837 -9.21948 -9.01003 -8.64416 -7.62786 -7.52274 -6.79969 -4.41338 2.21847 2.81550 3.08161 3.11789 3.15851 3.32850 3.82089 3.88251 3.92554 4.63616 4.66346 4.66926 4.92724 4.97786 5.05776 5.11472 5.16429 5.29502 5.34850 5.55853 5.60226 5.69262 5.69616 5.89876 6.06323 6.07342 6.16040 6.27290 6.72062 6.83650 6.87570 6.99185 7.02286 7.21514 7.38309 7.70356 7.76260 7.92970 8.10387 8.19700 8.50954 8.80378 8.83707 8.96936 10.14749 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033056 B = 0.002833 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.832475 B = 9879.867738 C =10621.013759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.128 4.128 6 C 0.122 3.878 7 N -0.739 5.739 8 C 0.563 3.437 9 O -0.546 6.546 10 C -0.128 4.128 11 C -0.219 4.219 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.459 4.459 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.093 4.093 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.551 -4.635 1.666 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.154 4.154 5 C -0.166 4.166 6 C -0.002 4.002 7 N -0.393 5.393 8 C 0.353 3.647 9 O -0.424 6.424 10 C -0.131 4.131 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.095 3.905 15 C -0.488 4.488 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.113 4.113 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.851 -5.741 1.510 16.926 hybrid contribution 0.167 0.587 0.040 0.612 sum -15.684 -5.154 1.550 16.582 Atomic orbital electron populations 1.22736 0.81070 1.02732 0.99961 1.87879 1.19688 1.28274 1.95431 1.22569 0.94209 0.84504 1.00255 1.21411 0.92751 0.97244 1.03996 1.21689 0.94875 0.97040 1.02971 1.21187 0.91377 0.85321 1.02307 1.45947 1.07316 1.08232 1.77774 1.18852 0.81095 0.90095 0.74626 1.90695 1.61143 1.40715 1.49870 1.19480 0.94997 0.90387 1.08251 1.20334 0.96322 0.92399 1.14843 1.20431 0.94906 0.95354 1.00926 1.21093 0.92808 0.97543 1.11795 1.17611 0.93457 0.90622 0.88760 1.19604 0.90814 1.02520 1.35895 0.90035 1.25979 1.01691 0.94341 0.92659 1.69795 1.38515 1.10925 1.21450 0.86252 0.81420 0.79706 0.79105 1.19194 1.20190 1.18526 1.21644 0.91692 0.98700 0.99242 0.89659 0.94091 0.94091 0.93231 0.93211 0.90652 0.90676 0.91084 0.91071 0.91732 0.91774 0.76616 0.89260 0.88914 0.88618 0.90426 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.01 10.70 -35.23 -0.38 -4.38 16 3 C 0.06 0.53 5.94 37.16 0.22 0.75 16 4 C -0.12 -1.07 5.58 -26.73 -0.15 -1.22 16 5 C -0.13 -1.22 5.33 -26.73 -0.14 -1.37 16 6 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16 7 N -0.74 -12.19 5.51 -61.24 -0.34 -12.53 16 8 C 0.56 12.47 7.77 -12.31 -0.10 12.38 16 9 O -0.55 -13.96 16.33 5.33 0.09 -13.87 16 10 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 11 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 12 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 13 C -0.21 -5.06 9.78 -38.81 -0.38 -5.43 16 14 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 15 C -0.46 -12.11 9.05 -37.73 -0.34 -12.46 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 17 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 18 N -0.78 -20.88 10.96 55.55 0.61 -20.28 16 19 Si 0.91 18.88 29.60 -169.99 -5.03 13.84 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 23 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 5.59 6.49 -40.82 -0.26 5.32 16 36 H 0.09 1.53 6.38 -52.48 -0.33 1.19 16 37 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 40 H 0.13 3.89 5.75 -52.49 -0.30 3.59 16 LS Contribution 339.42 15.07 5.11 5.11 Total: -1.00 -30.85 339.42 -8.07 -38.91 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.95 Total: 7.71 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.18 Total: -14.52 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.27 Total: -32.81 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.29 Total: -18.25 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.85 -8.07 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044570341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.566 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds