Wall clock time and date at job start Mon Mar 30 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99698 * 2 1 4 4 C 1.53004 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47304 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47304 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47245 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 6 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.47392 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47269 * 300.00361 * 1 2 3 26 26 H 1.09006 * 109.46882 * 60.00008 * 1 2 3 27 27 H 1.09003 * 109.47274 * 60.00192 * 3 2 1 28 28 H 1.08996 * 109.47465 * 299.99791 * 3 2 1 29 29 H 1.09003 * 109.46885 * 59.99976 * 4 3 2 30 30 H 1.09000 * 109.46800 * 300.00716 * 4 3 2 31 31 H 1.09003 * 109.47240 * 60.00107 * 5 4 3 32 32 H 1.08996 * 109.47289 * 299.99835 * 5 4 3 33 33 H 1.09003 * 109.46885 * 59.99889 * 6 5 4 34 34 H 1.09000 * 109.46800 * 300.00630 * 6 5 4 35 35 H 0.97004 * 120.00039 * 359.97438 * 7 6 5 36 36 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 37 37 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5824 0.0013 6 6 5.6830 2.4617 0.0013 7 7 6.2788 3.8000 0.0025 8 6 7.6192 3.9409 0.0022 9 8 8.3336 2.9576 0.0014 10 6 8.2207 5.2919 0.0029 11 6 7.3988 6.4243 0.0033 12 6 7.9540 7.6912 0.0034 13 6 9.3219 7.8530 0.0036 14 6 10.1648 6.7258 0.0032 15 6 11.5697 6.8885 0.0040 16 1 12.0080 7.7966 0.3909 17 6 12.3920 5.8730 -0.4967 18 7 11.8889 4.9457 -1.2704 19 14 14.2081 5.8413 -0.0605 20 1 14.4199 4.9564 1.1132 21 1 14.9858 5.3258 -1.2158 22 1 14.6623 7.2164 0.2680 23 6 9.6029 5.4378 0.0031 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 3.8357 3.1231 0.8913 32 1 3.8365 3.1236 -0.8887 33 1 6.0046 1.9212 -0.8890 34 1 6.0045 1.9203 0.8910 35 1 5.7086 4.5848 0.0028 36 1 6.3249 6.3085 0.0035 37 1 7.3109 8.5589 0.0041 38 1 9.7480 8.8454 0.0033 39 1 12.4589 4.2419 -1.6178 40 1 10.2412 4.5666 0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044570341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:17 Heat of formation + Delta-G solvation = -104.431299 kcal Electronic energy + Delta-G solvation = -20208.838025 eV Core-core repulsion = 16986.691203 eV Total energy + Delta-G solvation = -3222.146823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90081 -39.03381 -38.78921 -36.81135 -35.61520 -34.23106 -32.04577 -31.27587 -29.48134 -27.33749 -26.96364 -24.81489 -23.33058 -22.75410 -22.35217 -21.06572 -19.48407 -17.98896 -17.31658 -17.24341 -17.12872 -16.75553 -16.42615 -16.39627 -15.85193 -15.33954 -15.26773 -15.02804 -14.39954 -14.25923 -14.02300 -13.48019 -13.36710 -12.99464 -12.85454 -12.81275 -12.68475 -12.50900 -12.32531 -12.17220 -11.90467 -11.88079 -11.69474 -11.49599 -11.08848 -10.79333 -10.59919 -10.14864 -9.46876 -9.38339 -8.66910 -6.38349 0.38133 1.00851 1.36034 1.47805 1.51006 2.10121 2.18833 2.21546 2.78558 2.89681 3.70137 3.83220 3.94174 4.05900 4.28289 4.29261 4.35057 4.44768 4.54725 4.55314 4.60796 4.61170 4.71290 4.81125 4.86814 4.89379 4.98252 5.09102 5.19898 5.25013 5.28440 5.31646 5.47696 5.52810 5.87111 5.92853 6.05725 6.25719 6.29034 6.52039 6.70045 6.87762 6.94921 7.31955 8.29954 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033056 B = 0.002833 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.832475 B = 9879.867738 C =10621.013759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.061 3.939 4 C -0.114 4.114 5 C -0.112 4.112 6 C 0.118 3.882 7 N -0.712 5.712 8 C 0.557 3.443 9 O -0.592 6.592 10 C -0.140 4.140 11 C -0.196 4.196 12 C -0.096 4.096 13 C -0.217 4.217 14 C 0.065 3.935 15 C -0.497 4.497 16 H 0.084 0.916 17 C 0.027 3.973 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.249 1.249 23 C -0.134 4.134 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.415 0.585 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 -3.214 2.011 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.343 6.343 3 C -0.015 4.015 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.005 4.005 7 N -0.366 5.366 8 C 0.347 3.653 9 O -0.474 6.474 10 C -0.143 4.143 11 C -0.216 4.216 12 C -0.114 4.114 13 C -0.237 4.237 14 C 0.063 3.937 15 C -0.526 4.526 16 H 0.103 0.897 17 C -0.187 4.187 18 N -0.452 5.452 19 Si 0.804 3.196 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.173 1.173 23 C -0.154 4.154 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.670 -4.289 1.858 19.246 hybrid contribution 0.756 0.167 -0.055 0.776 sum -17.914 -4.122 1.802 18.470 Atomic orbital electron populations 1.22913 0.79512 1.03700 1.00928 1.87834 1.21520 1.29266 1.95651 1.22593 0.93269 0.84261 1.01407 1.21360 0.93711 0.96834 1.03328 1.21573 0.91114 0.97639 1.04635 1.21389 0.94256 0.83491 1.01409 1.45735 1.05374 1.10227 1.75229 1.18786 0.82779 0.88992 0.74734 1.90671 1.62711 1.41792 1.52223 1.19794 0.94397 0.92466 1.07626 1.20879 0.98531 0.91183 1.10993 1.20943 0.94325 0.97171 0.98923 1.21418 0.94147 0.97260 1.10850 1.17965 0.94368 0.91484 0.89887 1.19874 0.91586 1.03496 1.37654 0.89747 1.26882 1.06328 0.93582 0.91934 1.69897 1.40208 1.11962 1.23087 0.85168 0.75609 0.80075 0.78740 1.19239 1.19354 1.17262 1.21454 0.93093 0.97871 1.02996 0.88857 0.93065 0.93122 0.91980 0.92068 0.91492 0.91366 0.89267 0.89457 0.92906 0.92639 0.74698 0.84241 0.84163 0.87316 0.90331 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.88 10.70 -148.98 -1.59 -9.48 16 3 C 0.06 0.89 5.94 71.98 0.43 1.32 16 4 C -0.11 -1.89 5.58 30.59 0.17 -1.72 16 5 C -0.11 -1.79 5.33 30.59 0.16 -1.63 16 6 C 0.12 3.07 5.67 86.38 0.49 3.56 16 7 N -0.71 -22.03 5.51 -465.93 -2.57 -24.60 16 8 C 0.56 24.76 7.77 86.80 0.67 25.43 16 9 O -0.59 -31.54 16.33 -3.85 -0.06 -31.61 16 10 C -0.14 -6.63 5.87 -20.13 -0.12 -6.75 16 11 C -0.20 -7.56 9.55 22.70 0.22 -7.35 16 12 C -0.10 -3.73 10.01 22.17 0.22 -3.51 16 13 C -0.22 -10.12 9.78 22.77 0.22 -9.89 16 14 C 0.07 3.57 5.57 -21.32 -0.12 3.46 16 15 C -0.50 -27.30 9.05 23.47 0.21 -27.09 16 16 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 17 C 0.03 1.46 5.14 85.25 0.44 1.90 16 18 N -0.83 -46.80 10.96 21.82 0.24 -46.56 16 19 Si 0.98 40.14 29.60 68.60 2.03 42.17 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 23 C -0.13 -7.51 8.23 23.01 0.19 -7.33 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 9.89 6.49 -92.71 -0.60 9.29 16 36 H 0.14 3.93 6.38 -2.91 -0.02 3.91 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 39 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 40 H 0.10 6.11 5.75 -2.91 -0.02 6.10 16 Total: -1.00 -72.17 339.42 2.92 -69.25 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.43 Total: 28.88 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.44 Total: -28.06 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -2.33 Total: -71.16 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.66 Total: -41.08 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -72.17 2.92 -69.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044570341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.181 kcal (2) G-P(sol) polarization free energy of solvation -72.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds