Wall clock time and date at job start Mon Mar 30 2020 01:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42891 * 109.47141 * 2 1 4 4 C 1.42900 * 114.00175 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47377 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47147 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47111 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00041 * 179.97438 * 7 6 5 9 9 O 1.21550 * 119.99911 * 0.02562 * 8 7 6 10 10 C 1.47889 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.39919 * 120.02289 * 359.72304 * 10 8 7 12 12 C 1.38331 * 120.35518 * 179.74109 * 11 10 8 13 13 C 1.37755 * 120.40962 * 0.56184 * 12 11 10 14 14 C 1.40749 * 120.04173 * 359.69893 * 13 12 11 15 15 C 1.41437 * 120.17715 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99703 * 24.43313 * 15 14 13 17 17 C 1.39935 * 119.99843 * 204.43361 * 15 14 13 18 18 N 1.30820 * 120.00060 * 17.88878 * 17 15 14 19 19 Si 1.86798 * 119.99804 * 197.89412 * 17 15 14 20 20 H 1.48504 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47229 * 119.99657 * 19 17 15 22 22 H 1.48500 * 109.47071 * 239.99635 * 19 17 15 23 23 C 1.38989 * 120.02639 * 180.02562 * 10 8 7 24 24 H 1.09002 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46985 * 299.99929 * 1 2 3 26 26 H 1.08995 * 109.47235 * 59.99717 * 1 2 3 27 27 H 1.09003 * 109.46985 * 240.00071 * 2 1 3 28 28 H 1.09005 * 109.47169 * 120.00339 * 2 1 3 29 29 H 1.09009 * 109.46750 * 60.00555 * 4 3 2 30 30 H 1.08998 * 109.47612 * 300.00636 * 4 3 2 31 31 H 1.08996 * 109.47064 * 60.00292 * 5 4 3 32 32 H 1.09006 * 109.47532 * 300.00016 * 5 4 3 33 33 H 1.08998 * 109.47125 * 299.99836 * 6 5 4 34 34 H 1.08999 * 109.47064 * 60.00505 * 6 5 4 35 35 H 0.97004 * 119.99938 * 0.02562 * 7 6 5 36 36 H 1.07995 * 119.82198 * 0.02562 * 11 10 8 37 37 H 1.08007 * 119.79305 * 180.28187 * 12 11 10 38 38 H 1.08005 * 119.97807 * 179.71610 * 13 12 11 39 39 H 0.97000 * 119.99984 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.19845 * 359.95465 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3506 3.0591 0.0012 7 7 5.7284 4.4745 0.0011 8 6 7.0299 4.8247 0.0016 9 8 7.8902 3.9660 0.0016 10 6 7.4112 6.2536 0.0021 11 6 6.4213 7.2423 -0.0038 12 6 6.7702 8.5809 0.0021 13 6 8.0957 8.9560 0.0021 14 6 9.1054 7.9755 0.0026 15 6 10.4673 8.3574 0.0031 16 1 10.7571 9.3232 0.3901 17 6 11.4391 7.4839 -0.4977 18 7 11.0882 6.4896 -1.2720 19 14 13.2374 7.7378 -0.0606 20 1 13.3694 8.9244 0.8225 21 1 13.7498 6.5357 0.6448 22 1 14.0226 7.9554 -1.3021 23 6 8.7532 6.6152 0.0021 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8340 0.9764 -0.8893 30 1 3.8333 0.9766 0.8907 31 1 3.4223 3.4215 0.8911 32 1 3.4230 3.4222 -0.8888 33 1 5.7534 2.5752 0.8909 34 1 5.7533 2.5760 -0.8891 35 1 5.0418 5.1598 0.0015 36 1 5.3792 6.9590 -0.0083 37 1 5.9985 9.3366 0.0021 38 1 8.3602 10.0032 0.0020 39 1 11.7618 5.8839 -1.6189 40 1 9.5207 5.8553 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044874716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:46 Heat of formation + Delta-G solvation = -83.552106 kcal Electronic energy + Delta-G solvation = -20233.936739 eV Core-core repulsion = 17012.695306 eV Total energy + Delta-G solvation = -3221.241433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.24364 -38.34669 -37.04345 -35.14707 -33.74757 -32.43800 -30.89025 -29.79867 -29.41147 -25.73935 -25.07123 -23.08873 -22.37511 -21.58259 -20.87889 -19.45227 -17.71005 -17.02021 -16.66891 -16.06608 -15.54696 -15.27528 -15.01165 -14.60569 -14.44709 -14.06709 -13.66397 -13.18735 -13.01493 -12.89780 -12.64502 -12.47747 -11.91557 -11.88185 -11.81729 -11.63167 -11.24041 -11.18507 -11.10363 -11.02890 -10.72832 -10.48347 -10.02569 -9.85644 -9.68609 -9.22029 -9.02925 -8.67339 -7.62830 -7.51853 -6.80186 -4.41163 2.21254 2.80892 3.08117 3.13019 3.15144 3.22172 3.85401 3.87171 3.92422 4.63777 4.70867 4.79391 4.80089 4.93674 5.01755 5.08961 5.24290 5.39249 5.42705 5.58131 5.58938 5.61195 5.72754 5.79880 6.00874 6.04913 6.13001 6.28218 6.72244 6.82973 6.95001 6.99269 7.02345 7.21495 7.38472 7.70505 7.76180 7.92986 8.09439 8.19348 8.50962 8.80447 8.83689 8.94916 10.14559 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.002867 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.805614 B = 9763.828536 C =10503.629713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.067 3.933 5 C -0.130 4.130 6 C 0.125 3.875 7 N -0.737 5.737 8 C 0.564 3.436 9 O -0.547 6.547 10 C -0.128 4.128 11 C -0.218 4.218 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.459 4.459 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.910 3.090 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 -9.222 1.673 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.010 4.010 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.391 5.391 8 C 0.355 3.645 9 O -0.425 6.425 10 C -0.131 4.131 11 C -0.238 4.238 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.095 3.905 15 C -0.488 4.488 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.407 5.407 19 Si 0.734 3.266 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.113 4.113 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.422 -9.899 1.521 16.747 hybrid contribution 0.560 0.107 0.032 0.571 sum -12.861 -9.792 1.553 16.239 Atomic orbital electron populations 1.21747 0.93767 1.02191 1.03182 1.22455 0.95576 0.83833 1.00123 1.87865 1.21239 1.26444 1.95480 1.22350 0.81078 0.96961 1.00648 1.21679 0.95207 0.95776 1.04109 1.21048 0.93014 0.83607 1.02288 1.45905 1.08189 1.07256 1.77783 1.18856 0.81277 0.89853 0.74557 1.90694 1.49600 1.52247 1.49944 1.19464 0.95345 0.89971 1.08350 1.20347 0.95840 0.92936 1.14694 1.20442 0.95618 0.94666 1.00887 1.21103 0.92429 0.97929 1.11708 1.17611 0.93203 0.90879 0.88785 1.19619 0.90861 1.02469 1.35862 0.90019 1.25974 1.02018 0.93999 0.92663 1.69797 1.36795 1.12600 1.21538 0.86235 0.81435 0.79627 0.79316 1.18325 1.19555 1.19925 1.21644 0.93275 0.97115 0.99256 0.91149 0.91840 0.91825 0.93385 0.93396 0.92918 0.92944 0.90393 0.90377 0.91722 0.91688 0.76438 0.89192 0.88869 0.88602 0.90488 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.39 -4.23 10.34 -35.23 -0.36 -4.59 16 4 C 0.07 0.66 5.94 37.16 0.22 0.88 16 5 C -0.13 -1.39 5.70 -26.73 -0.15 -1.54 16 6 C 0.12 1.71 5.67 -4.04 -0.02 1.69 16 7 N -0.74 -12.27 5.51 -61.23 -0.34 -12.61 16 8 C 0.56 12.47 7.77 -12.31 -0.10 12.38 16 9 O -0.55 -13.86 16.33 5.32 0.09 -13.77 16 10 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 11 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 12 C -0.10 -2.10 10.01 -39.72 -0.40 -2.49 16 13 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 14 C 0.10 2.60 5.57 -106.87 -0.60 2.01 16 15 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 16 H 0.08 2.05 7.91 -52.48 -0.42 1.63 16 17 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 18 N -0.78 -20.85 10.95 55.55 0.61 -20.24 16 19 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 C -0.09 -2.49 8.24 -38.45 -0.32 -2.81 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 5.75 6.49 -40.82 -0.26 5.49 16 36 H 0.09 1.56 6.38 -52.49 -0.33 1.23 16 37 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 39 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.13 3.89 5.74 -52.48 -0.30 3.58 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -30.50 339.77 -8.39 -38.89 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.95 Total: 8.00 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.53 Total: -14.60 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.27 Total: -32.85 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.28 Total: -18.36 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.50 -8.39 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044874716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.662 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds