Wall clock time and date at job start Mon Mar 30 2020 01:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42891 * 109.47141 * 2 1 4 4 C 1.42900 * 114.00175 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47377 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47147 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47111 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00041 * 179.97438 * 7 6 5 9 9 O 1.21550 * 119.99911 * 0.02562 * 8 7 6 10 10 C 1.47889 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.39919 * 120.02289 * 359.72304 * 10 8 7 12 12 C 1.38331 * 120.35518 * 179.74109 * 11 10 8 13 13 C 1.37755 * 120.40962 * 0.56184 * 12 11 10 14 14 C 1.40749 * 120.04173 * 359.69893 * 13 12 11 15 15 C 1.41437 * 120.17715 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99703 * 24.43313 * 15 14 13 17 17 C 1.39935 * 119.99843 * 204.43361 * 15 14 13 18 18 N 1.30820 * 120.00060 * 17.88878 * 17 15 14 19 19 Si 1.86798 * 119.99804 * 197.89412 * 17 15 14 20 20 H 1.48504 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47229 * 119.99657 * 19 17 15 22 22 H 1.48500 * 109.47071 * 239.99635 * 19 17 15 23 23 C 1.38989 * 120.02639 * 180.02562 * 10 8 7 24 24 H 1.09002 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46985 * 299.99929 * 1 2 3 26 26 H 1.08995 * 109.47235 * 59.99717 * 1 2 3 27 27 H 1.09003 * 109.46985 * 240.00071 * 2 1 3 28 28 H 1.09005 * 109.47169 * 120.00339 * 2 1 3 29 29 H 1.09009 * 109.46750 * 60.00555 * 4 3 2 30 30 H 1.08998 * 109.47612 * 300.00636 * 4 3 2 31 31 H 1.08996 * 109.47064 * 60.00292 * 5 4 3 32 32 H 1.09006 * 109.47532 * 300.00016 * 5 4 3 33 33 H 1.08998 * 109.47125 * 299.99836 * 6 5 4 34 34 H 1.08999 * 109.47064 * 60.00505 * 6 5 4 35 35 H 0.97004 * 119.99938 * 0.02562 * 7 6 5 36 36 H 1.07995 * 119.82198 * 0.02562 * 11 10 8 37 37 H 1.08007 * 119.79305 * 180.28187 * 12 11 10 38 38 H 1.08005 * 119.97807 * 179.71610 * 13 12 11 39 39 H 0.97000 * 119.99984 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.19845 * 359.95465 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3506 3.0591 0.0012 7 7 5.7284 4.4745 0.0011 8 6 7.0299 4.8247 0.0016 9 8 7.8902 3.9660 0.0016 10 6 7.4112 6.2536 0.0021 11 6 6.4213 7.2423 -0.0038 12 6 6.7702 8.5809 0.0021 13 6 8.0957 8.9560 0.0021 14 6 9.1054 7.9755 0.0026 15 6 10.4673 8.3574 0.0031 16 1 10.7571 9.3232 0.3901 17 6 11.4391 7.4839 -0.4977 18 7 11.0882 6.4896 -1.2720 19 14 13.2374 7.7378 -0.0606 20 1 13.3694 8.9244 0.8225 21 1 13.7498 6.5357 0.6448 22 1 14.0226 7.9554 -1.3021 23 6 8.7532 6.6152 0.0021 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8340 0.9764 -0.8893 30 1 3.8333 0.9766 0.8907 31 1 3.4223 3.4215 0.8911 32 1 3.4230 3.4222 -0.8888 33 1 5.7534 2.5752 0.8909 34 1 5.7533 2.5760 -0.8891 35 1 5.0418 5.1598 0.0015 36 1 5.3792 6.9590 -0.0083 37 1 5.9985 9.3366 0.0021 38 1 8.3602 10.0032 0.0020 39 1 11.7618 5.8839 -1.6189 40 1 9.5207 5.8553 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044874716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:46 Heat of formation + Delta-G solvation = -102.751127 kcal Electronic energy + Delta-G solvation = -20234.769271 eV Core-core repulsion = 17012.695306 eV Total energy + Delta-G solvation = -3222.073965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91812 -39.17281 -38.79241 -36.49724 -35.59702 -33.52723 -32.11915 -31.32044 -31.07104 -27.35527 -26.50795 -23.92623 -23.67357 -22.89306 -22.50276 -21.13336 -19.48676 -18.08970 -17.61283 -17.44187 -17.09938 -16.64040 -16.37911 -16.34910 -15.46655 -15.27145 -15.22015 -14.92683 -14.38050 -14.26138 -14.05275 -13.50519 -13.44870 -12.97575 -12.80617 -12.73665 -12.67854 -12.62863 -12.51885 -12.17418 -11.96791 -11.88680 -11.87656 -11.50123 -11.08338 -10.81463 -10.56067 -10.17292 -9.47435 -9.38618 -8.67061 -6.38285 0.37386 1.00293 1.36426 1.46602 1.52855 2.08886 2.11455 2.19290 2.77842 2.81358 3.69765 3.90501 3.93275 4.09037 4.13844 4.17594 4.37300 4.43648 4.45746 4.48853 4.52141 4.60498 4.64144 4.86083 4.91176 5.02284 5.08454 5.09095 5.10785 5.19433 5.28210 5.31351 5.44010 5.52225 5.86565 5.92616 6.05440 6.24811 6.28580 6.50665 6.67873 6.87767 6.94487 7.29250 8.29996 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.002867 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.805614 B = 9763.828536 C =10503.629713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.410 6.410 4 C 0.066 3.934 5 C -0.116 4.116 6 C 0.123 3.877 7 N -0.713 5.713 8 C 0.560 3.440 9 O -0.590 6.590 10 C -0.139 4.139 11 C -0.197 4.197 12 C -0.096 4.096 13 C -0.217 4.217 14 C 0.065 3.935 15 C -0.496 4.496 16 H 0.084 0.916 17 C 0.028 3.972 18 N -0.825 5.825 19 Si 0.983 3.017 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.264 1.264 23 C -0.133 4.133 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.384 -8.915 2.006 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.330 6.330 4 C -0.011 4.011 5 C -0.154 4.154 6 C 0.000 4.000 7 N -0.367 5.367 8 C 0.350 3.650 9 O -0.471 6.471 10 C -0.143 4.143 11 C -0.217 4.217 12 C -0.114 4.114 13 C -0.237 4.237 14 C 0.063 3.937 15 C -0.526 4.526 16 H 0.102 0.898 17 C -0.187 4.187 18 N -0.451 5.451 19 Si 0.804 3.196 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.189 1.189 23 C -0.153 4.153 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.252 0.748 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.852 -9.579 1.855 18.614 hybrid contribution 1.033 -0.011 -0.064 1.035 sum -14.819 -9.590 1.791 17.742 Atomic orbital electron populations 1.21769 0.92869 1.03372 1.02715 1.22674 0.96383 0.82820 1.00917 1.87826 1.21406 1.28128 1.95637 1.22333 0.81086 0.96312 1.01370 1.21530 0.92395 0.96757 1.04725 1.21203 0.95338 0.81489 1.01977 1.45707 1.06438 1.09166 1.75350 1.18744 0.82682 0.88925 0.74690 1.90670 1.51276 1.53008 1.52176 1.19778 0.94957 0.91857 1.07673 1.20873 0.97470 0.92294 1.11077 1.20942 0.95581 0.95921 0.98943 1.21420 0.93287 0.98108 1.10854 1.17966 0.94351 0.91498 0.89870 1.19888 0.91788 1.03278 1.37615 0.89768 1.26877 1.06517 0.93372 0.91929 1.69895 1.38260 1.13886 1.23073 0.85141 0.75616 0.79556 0.79310 1.17404 1.19543 1.18851 1.21457 0.94185 0.96744 1.02925 0.89193 0.92259 0.92298 0.92633 0.92563 0.92347 0.92216 0.89645 0.89826 0.91947 0.92226 0.74758 0.84443 0.84266 0.87314 0.90299 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.68 6.66 71.98 0.48 1.16 16 3 O -0.41 -8.01 10.34 -148.98 -1.54 -9.55 16 4 C 0.07 1.16 5.94 71.98 0.43 1.59 16 5 C -0.12 -2.18 5.70 30.59 0.17 -2.01 16 6 C 0.12 3.19 5.67 86.38 0.49 3.68 16 7 N -0.71 -22.36 5.51 -465.92 -2.57 -24.93 16 8 C 0.56 24.76 7.77 86.80 0.67 25.43 16 9 O -0.59 -30.92 16.33 -3.87 -0.06 -30.99 16 10 C -0.14 -6.64 5.87 -20.13 -0.12 -6.76 16 11 C -0.20 -7.74 9.55 22.70 0.22 -7.52 16 12 C -0.10 -3.80 10.01 22.18 0.22 -3.57 16 13 C -0.22 -10.17 9.78 22.77 0.22 -9.95 16 14 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 15 C -0.50 -27.25 9.05 23.47 0.21 -27.04 16 16 H 0.08 4.36 7.91 -2.91 -0.02 4.34 16 17 C 0.03 1.47 5.14 85.25 0.44 1.91 16 18 N -0.83 -46.49 10.95 21.82 0.24 -46.25 16 19 Si 0.98 39.93 29.59 68.60 2.03 41.96 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 C -0.13 -7.44 8.24 23.00 0.19 -7.25 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 10.42 6.49 -92.71 -0.60 9.82 16 36 H 0.14 4.03 6.38 -2.91 -0.02 4.01 16 37 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.29 14.80 8.30 -92.71 -0.77 14.04 16 40 H 0.10 6.18 5.74 -2.91 -0.02 6.16 16 Total: -1.00 -70.13 339.77 2.78 -67.35 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.43 Total: 30.26 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.25 Total: -27.85 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -2.33 Total: -71.18 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.60 Total: -40.54 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -70.13 2.78 -67.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044874716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.402 kcal (2) G-P(sol) polarization free energy of solvation -70.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds