Wall clock time and date at job start Mon Mar 30 2020 01:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47299 * 2 1 4 4 C 1.37097 * 119.99774 * 264.76837 * 3 2 1 5 5 H 1.08002 * 120.00340 * 138.84765 * 4 3 2 6 6 C 1.38957 * 119.99828 * 318.84986 * 4 3 2 7 7 N 1.31407 * 119.99869 * 341.83455 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 161.83370 * 6 4 3 9 9 H 1.48506 * 109.47029 * 59.99909 * 8 6 4 10 10 H 1.48497 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47124 * 300.00183 * 8 6 4 12 12 C 1.34778 * 120.00043 * 84.76485 * 3 2 1 13 13 O 1.21297 * 119.99590 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00197 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47034 * 179.97438 * 14 12 3 16 16 O 1.42897 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.35906 * 117.00022 * 180.02562 * 16 15 14 18 18 C 1.38755 * 120.04974 * 359.73222 * 17 16 15 19 19 C 1.38125 * 119.93954 * 179.69909 * 18 17 16 20 20 C 1.38293 * 120.05586 * 0.59597 * 19 18 17 21 21 C 1.38241 * 120.10791 * 359.67502 * 20 19 18 22 22 C 1.50703 * 119.97117 * 180.02562 * 21 20 19 23 23 C 1.38168 * 120.06192 * 0.02562 * 21 20 19 24 24 H 1.09000 * 109.46591 * 60.00135 * 1 2 3 25 25 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47137 * 300.00687 * 1 2 3 27 27 H 1.08992 * 109.47478 * 239.99679 * 2 1 3 28 28 H 1.09007 * 109.46713 * 119.99523 * 2 1 3 29 29 H 0.97004 * 119.99778 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46591 * 59.99958 * 14 12 3 31 31 H 1.08997 * 109.47112 * 299.99826 * 14 12 3 32 32 H 1.08997 * 109.47386 * 300.00096 * 15 14 12 33 33 H 1.09002 * 109.46559 * 60.00184 * 15 14 12 34 34 H 1.08001 * 120.03424 * 359.96991 * 18 17 16 35 35 H 1.07997 * 119.97369 * 180.29575 * 19 18 17 36 36 H 1.07995 * 119.94636 * 179.70404 * 20 19 18 37 37 H 1.09005 * 109.46991 * 270.02742 * 22 21 20 38 38 H 1.09001 * 109.47162 * 30.02494 * 22 21 20 39 39 H 1.09001 * 109.47196 * 150.02387 * 22 21 20 40 40 H 1.07992 * 120.03017 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0744 3.0218 -1.3536 6 6 3.0373 1.2840 -2.1605 7 7 3.6791 0.1816 -1.8450 8 14 3.0502 1.9002 -3.9239 9 1 3.6539 3.2563 -3.9700 10 1 3.8494 0.9743 -4.7660 11 1 1.6581 1.9605 -4.4374 12 6 2.1427 2.0521 1.1623 13 8 2.5475 3.1955 1.1623 14 6 1.7798 1.3812 2.4620 15 6 2.0117 2.3539 3.6201 16 8 1.6670 1.7180 4.8525 17 6 1.8156 2.4505 5.9875 18 6 2.2889 3.7529 5.9169 19 6 2.4332 4.4975 7.0713 20 6 2.1180 3.9419 8.2978 21 6 1.6516 2.6426 8.3712 22 6 1.3086 2.0403 9.7094 23 6 1.4997 1.8956 7.2189 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1600 -0.3120 -2.5277 30 1 2.4019 0.4970 2.6005 31 1 0.7305 1.0873 2.4386 32 1 3.0611 2.6475 3.6434 33 1 1.3899 3.2384 3.4817 34 1 2.5402 4.1856 4.9598 35 1 2.7970 5.5129 7.0165 36 1 2.2360 4.5240 9.1997 37 1 2.1909 1.5544 10.1261 38 1 0.9728 2.8260 10.3862 39 1 0.5140 1.3048 9.5839 40 1 1.1349 0.8808 7.2768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:32 Heat of formation + Delta-G solvation = -56.934507 kcal Electronic energy + Delta-G solvation = -20902.372786 eV Core-core repulsion = 17682.285579 eV Total energy + Delta-G solvation = -3220.087207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07932 -38.67774 -37.49898 -35.04564 -32.58416 -32.30142 -31.42239 -29.58637 -29.42671 -27.06417 -25.46403 -23.51260 -22.51337 -22.19180 -20.78899 -18.81849 -17.71128 -16.78838 -16.20523 -16.00179 -15.84821 -15.43978 -14.93553 -14.28155 -14.17203 -14.04446 -13.66117 -13.29245 -13.19044 -12.95695 -12.76871 -12.39221 -12.23932 -11.84874 -11.74809 -11.54966 -11.40612 -11.27651 -11.05307 -10.99289 -10.62371 -10.54974 -10.38559 -10.29048 -10.08661 -8.94174 -8.80573 -8.49227 -8.11484 -7.46604 -6.34886 -4.03940 1.31065 1.47329 3.18313 3.22545 3.24348 3.31787 3.75819 3.86127 4.16139 4.74549 4.80549 4.89986 4.99843 5.09393 5.16908 5.31166 5.33549 5.37666 5.43377 5.47479 5.65473 5.69202 5.73963 5.81834 5.97273 6.05418 6.10741 6.20057 6.24314 6.35738 6.39214 6.46726 6.52698 6.54980 6.82105 6.85642 7.19826 7.55760 7.56771 8.25920 8.46981 9.14815 9.35415 9.96214 10.70320 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037390 B = 0.003236 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.675919 B = 8650.059295 C = 9107.408654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.437 5.437 4 C -0.312 4.312 5 H 0.088 0.912 6 C 0.039 3.961 7 N -0.871 5.871 8 Si 0.920 3.080 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.465 3.535 13 O -0.584 6.584 14 C -0.134 4.134 15 C 0.079 3.921 16 O -0.319 6.319 17 C 0.143 3.857 18 C -0.213 4.213 19 C -0.076 4.076 20 C -0.167 4.167 21 C -0.053 4.053 22 C -0.113 4.113 23 C -0.159 4.159 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.104 0.896 28 H 0.050 0.950 29 H 0.269 0.731 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 0.244 16.095 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.156 5.156 4 C -0.439 4.439 5 H 0.106 0.894 6 C -0.165 4.165 7 N -0.508 5.508 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.253 3.747 13 O -0.468 6.468 14 C -0.175 4.175 15 C 0.004 3.996 16 O -0.233 6.233 17 C 0.097 3.903 18 C -0.232 4.232 19 C -0.095 4.095 20 C -0.185 4.185 21 C -0.054 4.054 22 C -0.169 4.169 23 C -0.178 4.178 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.773 0.442 15.925 16.630 hybrid contribution 0.174 0.275 -1.051 1.100 sum -4.599 0.717 14.874 15.585 Atomic orbital electron populations 1.22224 0.98111 1.00485 1.01569 1.21497 0.91707 0.85477 1.03609 1.43412 1.55723 1.11791 1.04670 1.19342 1.35140 0.98615 0.90840 0.89416 1.25441 0.93951 0.96520 1.00624 1.69917 1.29241 1.17488 1.34171 0.86116 0.78400 0.78865 0.82011 1.19704 1.20944 1.19837 1.20033 0.82219 0.87870 0.84553 1.90528 1.50589 1.18791 1.86939 1.21531 1.03710 0.99544 0.92671 1.22531 1.01146 0.95823 0.80074 1.85996 1.81928 1.41716 1.13637 1.19031 0.94323 0.90246 0.86712 1.21428 1.06850 0.94658 1.00274 1.20937 0.97285 0.99318 0.91923 1.20878 1.04512 0.95461 0.97659 1.19659 0.97145 0.93884 0.94669 1.20786 1.01815 1.00906 0.93417 1.20276 1.07080 1.01031 0.89400 0.92388 0.92982 0.93799 0.87804 0.93160 0.92142 0.89080 0.89357 0.91221 0.91367 0.84946 0.85898 0.86258 0.91049 0.91484 0.91429 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.15 37.16 0.38 -2.56 16 2 C 0.10 2.17 5.41 -4.04 -0.02 2.14 16 3 N -0.44 -10.98 2.50 -114.81 -0.29 -11.27 16 4 C -0.31 -8.59 8.84 -14.93 -0.13 -8.72 16 5 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 6 C 0.04 1.04 4.95 -17.47 -0.09 0.95 16 7 N -0.87 -23.44 11.61 55.50 0.64 -22.79 16 8 Si 0.92 20.51 29.59 -169.99 -5.03 15.48 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 12 C 0.47 11.27 7.59 -10.99 -0.08 11.19 16 13 O -0.58 -16.05 15.89 5.54 0.09 -15.96 16 14 C -0.13 -2.52 4.68 -27.88 -0.13 -2.65 16 15 C 0.08 1.39 4.03 37.16 0.15 1.54 16 16 O -0.32 -5.27 10.14 -19.45 -0.20 -5.47 16 17 C 0.14 2.16 6.69 -39.22 -0.26 1.90 16 18 C -0.21 -3.04 9.04 -39.43 -0.36 -3.40 16 19 C -0.08 -0.92 10.04 -39.60 -0.40 -1.32 16 20 C -0.17 -1.84 9.70 -39.56 -0.38 -2.22 16 21 C -0.05 -0.60 5.88 -104.64 -0.62 -1.21 16 22 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 23 C -0.16 -2.08 9.64 -39.43 -0.38 -2.46 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.73 6.60 -51.93 -0.34 0.39 16 27 H 0.10 2.45 5.76 -51.93 -0.30 2.15 16 28 H 0.05 0.98 6.66 -51.92 -0.35 0.64 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.09 1.63 7.41 -51.93 -0.38 1.25 16 31 H 0.09 1.50 6.54 -51.93 -0.34 1.16 16 32 H 0.07 1.27 7.61 -51.93 -0.40 0.87 16 33 H 0.07 1.20 7.63 -51.93 -0.40 0.81 16 34 H 0.13 1.92 6.30 -52.49 -0.33 1.59 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -30.86 333.09 -7.48 -38.34 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.76 Total: 4.00 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.96 Total: -7.35 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.36 Total: -34.06 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.11 Total: -21.43 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.86 -7.48 -38.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.599 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds