Wall clock time and date at job start Mon Mar 30 2020 01:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47299 * 2 1 4 4 C 1.37097 * 119.99774 * 264.76837 * 3 2 1 5 5 H 1.08002 * 120.00340 * 138.84765 * 4 3 2 6 6 C 1.38957 * 119.99828 * 318.84986 * 4 3 2 7 7 N 1.31407 * 119.99869 * 341.83455 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 161.83370 * 6 4 3 9 9 H 1.48506 * 109.47029 * 59.99909 * 8 6 4 10 10 H 1.48497 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47124 * 300.00183 * 8 6 4 12 12 C 1.34778 * 120.00043 * 84.76485 * 3 2 1 13 13 O 1.21297 * 119.99590 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00197 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47034 * 179.97438 * 14 12 3 16 16 O 1.42897 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.35906 * 117.00022 * 180.02562 * 16 15 14 18 18 C 1.38755 * 120.04974 * 359.73222 * 17 16 15 19 19 C 1.38125 * 119.93954 * 179.69909 * 18 17 16 20 20 C 1.38293 * 120.05586 * 0.59597 * 19 18 17 21 21 C 1.38241 * 120.10791 * 359.67502 * 20 19 18 22 22 C 1.50703 * 119.97117 * 180.02562 * 21 20 19 23 23 C 1.38168 * 120.06192 * 0.02562 * 21 20 19 24 24 H 1.09000 * 109.46591 * 60.00135 * 1 2 3 25 25 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47137 * 300.00687 * 1 2 3 27 27 H 1.08992 * 109.47478 * 239.99679 * 2 1 3 28 28 H 1.09007 * 109.46713 * 119.99523 * 2 1 3 29 29 H 0.97004 * 119.99778 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46591 * 59.99958 * 14 12 3 31 31 H 1.08997 * 109.47112 * 299.99826 * 14 12 3 32 32 H 1.08997 * 109.47386 * 300.00096 * 15 14 12 33 33 H 1.09002 * 109.46559 * 60.00184 * 15 14 12 34 34 H 1.08001 * 120.03424 * 359.96991 * 18 17 16 35 35 H 1.07997 * 119.97369 * 180.29575 * 19 18 17 36 36 H 1.07995 * 119.94636 * 179.70404 * 20 19 18 37 37 H 1.09005 * 109.46991 * 270.02742 * 22 21 20 38 38 H 1.09001 * 109.47162 * 30.02494 * 22 21 20 39 39 H 1.09001 * 109.47196 * 150.02387 * 22 21 20 40 40 H 1.07992 * 120.03017 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0744 3.0218 -1.3536 6 6 3.0373 1.2840 -2.1605 7 7 3.6791 0.1816 -1.8450 8 14 3.0502 1.9002 -3.9239 9 1 3.6539 3.2563 -3.9700 10 1 3.8494 0.9743 -4.7660 11 1 1.6581 1.9605 -4.4374 12 6 2.1427 2.0521 1.1623 13 8 2.5475 3.1955 1.1623 14 6 1.7798 1.3812 2.4620 15 6 2.0117 2.3539 3.6201 16 8 1.6670 1.7180 4.8525 17 6 1.8156 2.4505 5.9875 18 6 2.2889 3.7529 5.9169 19 6 2.4332 4.4975 7.0713 20 6 2.1180 3.9419 8.2978 21 6 1.6516 2.6426 8.3712 22 6 1.3086 2.0403 9.7094 23 6 1.4997 1.8956 7.2189 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1600 -0.3120 -2.5277 30 1 2.4019 0.4970 2.6005 31 1 0.7305 1.0873 2.4386 32 1 3.0611 2.6475 3.6434 33 1 1.3899 3.2384 3.4817 34 1 2.5402 4.1856 4.9598 35 1 2.7970 5.5129 7.0165 36 1 2.2360 4.5240 9.1997 37 1 2.1909 1.5544 10.1261 38 1 0.9728 2.8260 10.3862 39 1 0.5140 1.3048 9.5839 40 1 1.1349 0.8808 7.2768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:32 Heat of formation + Delta-G solvation = -74.047025 kcal Electronic energy + Delta-G solvation = -20903.114841 eV Core-core repulsion = 17682.285579 eV Total energy + Delta-G solvation = -3220.829262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23244 -40.44608 -38.64044 -36.96385 -34.21124 -33.43349 -32.93293 -31.17910 -30.68763 -27.93170 -27.26500 -25.06737 -23.84361 -23.48539 -21.89040 -20.59351 -19.01934 -18.62095 -17.71219 -17.43905 -16.95716 -16.84542 -16.63116 -15.94961 -15.73997 -15.15464 -14.66376 -14.54029 -14.43836 -14.37921 -14.11018 -13.89685 -13.57699 -13.28914 -12.97343 -12.87744 -12.74257 -12.64607 -12.55823 -12.43462 -12.25740 -12.11614 -11.88198 -11.71562 -11.63756 -10.90012 -10.46097 -9.74477 -9.44261 -9.16733 -8.36380 -6.13737 0.35074 0.47882 1.38901 1.40595 1.50775 1.94467 2.00666 2.32662 2.78827 2.98947 3.16524 3.72863 3.89961 3.90423 3.94982 4.09927 4.16021 4.26610 4.33338 4.42337 4.50687 4.54711 4.59922 4.68852 4.74949 4.87133 4.88581 4.89691 5.04134 5.06176 5.26204 5.29075 5.38533 5.43860 5.50419 5.53999 5.64399 5.87225 6.20992 6.39441 6.50670 7.13962 7.41150 8.00822 8.67392 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037390 B = 0.003236 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.675919 B = 8650.059295 C = 9107.408654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.449 5.449 4 C -0.345 4.345 5 H 0.063 0.937 6 C 0.005 3.995 7 N -0.890 5.890 8 Si 0.983 3.017 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.262 1.262 12 C 0.452 3.548 13 O -0.629 6.629 14 C -0.119 4.119 15 C 0.093 3.907 16 O -0.325 6.325 17 C 0.111 3.889 18 C -0.234 4.234 19 C -0.082 4.082 20 C -0.162 4.162 21 C -0.053 4.053 22 C -0.111 4.111 23 C -0.168 4.168 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.274 0.726 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -0.515 17.827 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.168 5.168 4 C -0.473 4.473 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.527 5.527 8 Si 0.806 3.194 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.242 3.758 13 O -0.516 6.516 14 C -0.159 4.159 15 C 0.018 3.982 16 O -0.239 6.239 17 C 0.066 3.934 18 C -0.253 4.253 19 C -0.100 4.100 20 C -0.180 4.180 21 C -0.053 4.053 22 C -0.167 4.167 23 C -0.186 4.186 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.614 -0.354 17.673 18.547 hybrid contribution 0.462 0.530 -1.459 1.619 sum -5.152 0.177 16.215 17.014 Atomic orbital electron populations 1.22117 0.95097 1.02676 1.01403 1.21620 0.94157 0.83338 1.03281 1.43709 1.55683 1.13050 1.04370 1.19336 1.36909 0.98297 0.92789 0.91914 1.26187 0.93003 0.96560 1.04046 1.69984 1.29179 1.18113 1.35465 0.85169 0.78949 0.78028 0.77240 1.20331 1.19613 1.18664 1.20860 0.81372 0.87496 0.86093 1.90486 1.52463 1.20828 1.87831 1.21358 1.05183 0.99347 0.89996 1.22194 1.00113 0.95237 0.80689 1.85937 1.82491 1.41888 1.13557 1.19365 0.96386 0.90888 0.86783 1.21477 1.08121 0.94985 1.00721 1.21246 0.96897 1.00159 0.91679 1.21301 1.02840 0.95632 0.98256 1.20119 0.95709 0.93880 0.95564 1.20866 1.02622 1.01629 0.91623 1.20548 1.07108 1.01813 0.89174 0.93887 0.89537 0.92619 0.90109 0.91395 0.91633 0.87868 0.86999 0.92721 0.92138 0.86381 0.83875 0.83136 0.89849 0.89679 0.90688 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 10.15 71.98 0.73 -4.52 16 2 C 0.10 4.21 5.41 86.38 0.47 4.67 16 3 N -0.45 -23.09 2.50 -635.52 -1.59 -24.68 16 4 C -0.35 -19.65 8.84 84.04 0.74 -18.90 16 5 H 0.06 3.79 7.82 -2.91 -0.02 3.77 16 6 C 0.00 0.27 4.95 84.93 0.42 0.69 16 7 N -0.89 -48.24 11.61 21.66 0.25 -47.98 16 8 Si 0.98 42.37 29.59 68.60 2.03 44.40 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 12 C 0.45 22.52 7.59 87.66 0.67 23.19 16 13 O -0.63 -36.19 15.89 -3.08 -0.05 -36.24 16 14 C -0.12 -4.46 4.68 29.85 0.14 -4.33 16 15 C 0.09 3.37 4.03 71.98 0.29 3.66 16 16 O -0.32 -10.81 10.14 -92.49 -0.94 -11.75 16 17 C 0.11 3.36 6.69 22.51 0.15 3.51 16 18 C -0.23 -6.82 9.04 22.37 0.20 -6.61 16 19 C -0.08 -1.88 10.04 22.26 0.22 -1.66 16 20 C -0.16 -3.15 9.70 22.28 0.22 -2.94 16 21 C -0.05 -1.05 5.88 -19.88 -0.12 -1.17 16 22 C -0.11 -1.37 10.01 71.24 0.71 -0.65 16 23 C -0.17 -4.19 9.64 22.37 0.22 -3.97 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.05 1.74 6.60 -2.39 -0.02 1.73 16 27 H 0.08 3.82 5.76 -2.39 -0.01 3.81 16 28 H 0.07 2.59 6.66 -2.38 -0.02 2.57 16 29 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.10 3.63 7.41 -2.39 -0.02 3.61 16 31 H 0.11 3.66 6.54 -2.39 -0.02 3.64 16 32 H 0.05 2.11 7.61 -2.39 -0.02 2.09 16 33 H 0.06 2.25 7.63 -2.39 -0.02 2.23 16 34 H 0.12 3.67 6.30 -2.91 -0.02 3.65 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 39 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 40 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -68.96 333.09 5.79 -63.17 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.03 Total: 22.10 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.06 Total: -9.02 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.34 Total: -72.66 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.99 Total: -47.99 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -68.96 5.79 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.879 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds