Wall clock time and date at job start Mon Mar 30 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35989 * 117.00018 * 2 1 4 4 C 1.38564 * 120.07610 * 0.02732 * 3 2 1 5 5 C 1.38239 * 120.00093 * 179.70068 * 4 3 2 6 6 C 1.38256 * 120.14674 * 0.54783 * 5 4 3 7 7 C 1.50701 * 119.92765 * 179.72209 * 6 5 4 8 8 H 1.09002 * 109.87499 * 200.42831 * 7 6 5 9 9 C 1.54323 * 109.88099 * 79.41055 * 7 6 5 10 10 C 1.55157 * 102.94639 * 218.23450 * 9 7 6 11 11 C 1.54906 * 101.57850 * 35.50156 * 10 9 7 12 12 N 1.47027 * 110.01033 * 321.52937 * 7 6 5 13 13 C 1.36932 * 125.64544 * 298.38083 * 12 7 6 14 14 H 1.07994 * 120.00405 * 0.02562 * 13 12 7 15 15 C 1.38815 * 119.99646 * 180.02562 * 13 12 7 16 16 N 1.31615 * 120.00143 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99810 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47442 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47262 * 120.00299 * 17 15 13 20 20 H 1.48510 * 109.47293 * 240.00094 * 17 15 13 21 21 C 1.38244 * 120.14581 * 359.45555 * 6 5 4 22 22 C 1.38568 * 119.99609 * 0.26514 * 21 6 5 23 23 O 1.35997 * 120.06905 * 180.02562 * 22 21 6 24 24 C 1.42902 * 117.00230 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.46753 * 299.99611 * 1 2 3 26 26 H 1.09000 * 109.46798 * 59.99532 * 1 2 3 27 27 H 1.09003 * 109.46660 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99547 * 359.97294 * 4 3 2 29 29 H 1.07999 * 119.92763 * 180.29392 * 5 4 3 30 30 H 1.09003 * 110.72030 * 336.60563 * 9 7 6 31 31 H 1.09007 * 110.71350 * 99.87108 * 9 7 6 32 32 H 1.08994 * 111.00482 * 153.57487 * 10 9 7 33 33 H 1.09002 * 110.99849 * 277.39466 * 10 9 7 34 34 H 1.09009 * 110.36647 * 81.82643 * 11 10 9 35 35 H 1.08994 * 110.37102 * 204.15107 * 11 10 9 36 36 H 0.97002 * 120.00399 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.00218 * 180.30009 * 21 6 5 38 38 H 1.08997 * 109.47256 * 300.00566 * 24 23 22 39 39 H 1.09005 * 109.46438 * 60.00253 * 24 23 22 40 40 H 1.08993 * 109.46924 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0006 5 6 1.9225 3.6056 0.0068 6 6 3.3030 3.6798 0.0011 7 6 3.9838 5.0243 0.0016 8 1 5.0067 4.9219 -0.3608 9 6 3.9891 5.6093 1.4296 10 6 3.7379 7.1210 1.1869 11 6 2.7684 7.0852 -0.0207 12 7 3.2424 5.9639 -0.8523 13 6 3.0287 5.8217 -2.1973 14 1 3.4197 4.9602 -2.7181 15 6 2.3094 6.7849 -2.8914 16 7 1.8333 7.8351 -2.2568 17 14 2.0184 6.5912 -4.7264 18 1 2.6536 5.3347 -5.1985 19 1 0.5585 6.5391 -4.9934 20 1 2.6124 7.7463 -5.4465 21 6 4.0604 2.5233 0.0004 22 6 3.4360 1.2863 0.0000 23 8 4.1796 0.1476 -0.0001 24 6 5.6004 0.3005 -0.0004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2147 2.3196 0.0006 29 1 1.3343 4.5114 0.0121 30 1 3.1867 5.1760 2.0269 31 1 4.9558 5.4508 1.9077 32 1 3.2653 7.5827 2.0538 33 1 4.6644 7.6345 0.9298 34 1 1.7483 6.9020 0.3171 35 1 2.8221 8.0201 -0.5783 36 1 1.3310 8.5084 -2.7419 37 1 5.1387 2.5839 0.0008 38 1 5.9065 0.8504 -0.8903 39 1 5.9067 0.8503 0.8897 40 1 6.0716 -0.6823 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045915174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:51 Heat of formation + Delta-G solvation = -18.419971 kcal Electronic energy + Delta-G solvation = -22134.843739 eV Core-core repulsion = 18916.426648 eV Total energy + Delta-G solvation = -3218.417092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21021 -38.16737 -37.98519 -35.77390 -32.56563 -30.61324 -29.90409 -29.21866 -27.62153 -27.07293 -25.97115 -24.44409 -21.96979 -21.56165 -20.14732 -19.53104 -18.08233 -17.03516 -16.46211 -16.18569 -15.79595 -15.03452 -15.02385 -14.60330 -14.38960 -14.15268 -13.82683 -13.26263 -12.81812 -12.59172 -12.11844 -12.00608 -11.83959 -11.80163 -11.43284 -11.25686 -11.04829 -10.97874 -10.81546 -10.69963 -10.63006 -10.09683 -10.06192 -9.86858 -9.74336 -9.50719 -8.66021 -8.23452 -7.32188 -6.83868 -5.65304 -3.07246 1.76155 1.97064 3.39424 3.46269 3.48252 3.54508 3.55242 4.21046 4.49887 5.09012 5.16372 5.27623 5.29015 5.31277 5.32640 5.49185 5.54542 5.56685 5.58405 5.62215 5.65435 5.79431 5.84188 5.90323 6.05025 6.17197 6.31855 6.39541 6.62889 6.67178 6.72479 6.83530 6.92185 7.19543 7.32894 7.37947 7.52959 7.67783 7.86564 7.93035 8.36107 9.22872 9.83011 10.46924 11.38170 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.006128 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.991039 B = 4567.745939 C = 5186.031368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.080 3.920 4 C -0.176 4.176 5 C -0.076 4.076 6 C -0.068 4.068 7 C 0.194 3.806 8 H 0.042 0.958 9 C -0.120 4.120 10 C -0.147 4.147 11 C 0.150 3.850 12 N -0.589 5.589 13 C -0.214 4.214 14 H 0.076 0.924 15 C -0.010 4.010 16 N -0.922 5.922 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.172 4.172 22 C 0.087 3.913 23 O -0.314 6.314 24 C 0.029 3.971 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.011 0.989 35 H 0.107 0.893 36 H 0.251 0.749 37 H 0.127 0.873 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -10.768 7.554 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.035 3.965 4 C -0.195 4.195 5 C -0.094 4.094 6 C -0.071 4.071 7 C 0.086 3.914 8 H 0.060 0.940 9 C -0.158 4.158 10 C -0.186 4.186 11 C 0.026 3.974 12 N -0.312 5.312 13 C -0.342 4.342 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.571 5.571 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.192 4.192 22 C 0.042 3.958 23 O -0.228 6.228 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.145 0.855 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.177 -11.020 7.354 13.426 hybrid contribution -0.319 0.122 -1.058 1.111 sum 1.858 -10.899 6.297 12.723 Atomic orbital electron populations 1.22965 0.79324 1.03164 1.01172 1.86094 1.20418 1.26543 1.89781 1.18131 0.89000 0.84814 1.04554 1.21053 0.99444 0.91721 1.07246 1.20800 0.94484 0.96698 0.97452 1.20657 0.93973 0.95826 0.96636 1.19929 0.94224 0.86334 0.90902 0.94020 1.22565 1.00533 0.96884 0.95772 1.23015 1.00945 0.94671 0.99957 1.21976 0.92157 0.94818 0.88473 1.44601 1.62125 1.20447 1.04068 1.19072 1.28034 1.05045 0.82051 0.90608 1.24735 1.00447 0.97222 0.98101 1.69812 1.41553 1.11937 1.33758 0.86064 0.77553 0.77283 0.85066 1.20547 1.21814 1.21780 1.20925 0.99882 0.90699 1.07660 1.18124 0.88003 0.85742 1.03933 1.86100 1.18170 1.28808 1.89726 1.22969 0.79358 1.03089 1.01223 0.93045 0.92897 0.88836 0.85515 0.85016 0.91865 0.92265 0.92438 0.92243 0.97086 0.87521 0.93851 0.85474 0.92861 0.92997 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.21 10.28 -34.21 -0.35 -5.57 16 3 C 0.08 1.43 6.70 -39.12 -0.26 1.17 16 4 C -0.18 -3.11 9.04 -39.46 -0.36 -3.46 16 5 C -0.08 -1.50 9.15 -39.57 -0.36 -1.86 16 6 C -0.07 -1.33 4.56 -104.61 -0.48 -1.81 16 7 C 0.19 3.96 3.31 -68.10 -0.23 3.74 16 8 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 9 C -0.12 -2.09 6.46 -24.90 -0.16 -2.25 16 10 C -0.15 -2.74 7.09 -24.58 -0.17 -2.92 16 11 C 0.15 3.54 5.89 -2.53 -0.01 3.52 16 12 N -0.59 -14.42 2.38 -163.88 -0.39 -14.80 16 13 C -0.21 -5.81 9.82 -15.06 -0.15 -5.95 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 16 N -0.92 -26.32 10.09 55.49 0.56 -25.77 16 17 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 C -0.17 -3.03 8.66 -39.46 -0.34 -3.38 16 22 C 0.09 1.55 6.70 -39.12 -0.26 1.29 16 23 O -0.31 -5.19 10.28 -34.23 -0.35 -5.54 16 24 C 0.03 0.34 9.81 101.05 0.99 1.33 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 26 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.13 1.92 6.30 -52.49 -0.33 1.59 16 29 H 0.13 2.85 7.68 -52.49 -0.40 2.45 16 30 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 35 H 0.11 2.84 5.87 -51.93 -0.30 2.54 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.13 1.94 6.29 -52.49 -0.33 1.61 16 38 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 39 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -30.92 324.00 -7.44 -38.35 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.86 Total: 0.91 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.90 Total: -9.61 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.17 Total: -40.57 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.70 Total: -11.10 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.92 -7.44 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045915174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.933 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds