Wall clock time and date at job start Mon Mar 30 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35989 * 117.00018 * 2 1 4 4 C 1.38564 * 120.07610 * 0.02732 * 3 2 1 5 5 C 1.38239 * 120.00093 * 179.70068 * 4 3 2 6 6 C 1.38256 * 120.14674 * 0.54783 * 5 4 3 7 7 C 1.50701 * 119.92765 * 179.72209 * 6 5 4 8 8 H 1.09002 * 109.87499 * 200.42831 * 7 6 5 9 9 C 1.54323 * 109.88099 * 79.41055 * 7 6 5 10 10 C 1.55157 * 102.94639 * 218.23450 * 9 7 6 11 11 C 1.54906 * 101.57850 * 35.50156 * 10 9 7 12 12 N 1.47027 * 110.01033 * 321.52937 * 7 6 5 13 13 C 1.36932 * 125.64544 * 298.38083 * 12 7 6 14 14 H 1.07994 * 120.00405 * 0.02562 * 13 12 7 15 15 C 1.38815 * 119.99646 * 180.02562 * 13 12 7 16 16 N 1.31615 * 120.00143 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99810 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47442 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47262 * 120.00299 * 17 15 13 20 20 H 1.48510 * 109.47293 * 240.00094 * 17 15 13 21 21 C 1.38244 * 120.14581 * 359.45555 * 6 5 4 22 22 C 1.38568 * 119.99609 * 0.26514 * 21 6 5 23 23 O 1.35997 * 120.06905 * 180.02562 * 22 21 6 24 24 C 1.42902 * 117.00230 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.46753 * 299.99611 * 1 2 3 26 26 H 1.09000 * 109.46798 * 59.99532 * 1 2 3 27 27 H 1.09003 * 109.46660 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99547 * 359.97294 * 4 3 2 29 29 H 1.07999 * 119.92763 * 180.29392 * 5 4 3 30 30 H 1.09003 * 110.72030 * 336.60563 * 9 7 6 31 31 H 1.09007 * 110.71350 * 99.87108 * 9 7 6 32 32 H 1.08994 * 111.00482 * 153.57487 * 10 9 7 33 33 H 1.09002 * 110.99849 * 277.39466 * 10 9 7 34 34 H 1.09009 * 110.36647 * 81.82643 * 11 10 9 35 35 H 1.08994 * 110.37102 * 204.15107 * 11 10 9 36 36 H 0.97002 * 120.00399 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.00218 * 180.30009 * 21 6 5 38 38 H 1.08997 * 109.47256 * 300.00566 * 24 23 22 39 39 H 1.09005 * 109.46438 * 60.00253 * 24 23 22 40 40 H 1.08993 * 109.46924 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0006 5 6 1.9225 3.6056 0.0068 6 6 3.3030 3.6798 0.0011 7 6 3.9838 5.0243 0.0016 8 1 5.0067 4.9219 -0.3608 9 6 3.9891 5.6093 1.4296 10 6 3.7379 7.1210 1.1869 11 6 2.7684 7.0852 -0.0207 12 7 3.2424 5.9639 -0.8523 13 6 3.0287 5.8217 -2.1973 14 1 3.4197 4.9602 -2.7181 15 6 2.3094 6.7849 -2.8914 16 7 1.8333 7.8351 -2.2568 17 14 2.0184 6.5912 -4.7264 18 1 2.6536 5.3347 -5.1985 19 1 0.5585 6.5391 -4.9934 20 1 2.6124 7.7463 -5.4465 21 6 4.0604 2.5233 0.0004 22 6 3.4360 1.2863 0.0000 23 8 4.1796 0.1476 -0.0001 24 6 5.6004 0.3005 -0.0004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2147 2.3196 0.0006 29 1 1.3343 4.5114 0.0121 30 1 3.1867 5.1760 2.0269 31 1 4.9558 5.4508 1.9077 32 1 3.2653 7.5827 2.0538 33 1 4.6644 7.6345 0.9298 34 1 1.7483 6.9020 0.3171 35 1 2.8221 8.0201 -0.5783 36 1 1.3310 8.5084 -2.7419 37 1 5.1387 2.5839 0.0008 38 1 5.9065 0.8504 -0.8903 39 1 5.9067 0.8503 0.8897 40 1 6.0716 -0.6823 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045915174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:51 Heat of formation + Delta-G solvation = -35.830944 kcal Electronic energy + Delta-G solvation = -22135.598736 eV Core-core repulsion = 18916.426648 eV Total energy + Delta-G solvation = -3219.172088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53053 -39.58333 -39.32158 -37.22975 -34.51241 -32.06691 -31.31158 -30.96916 -28.95411 -28.03967 -27.38318 -26.36511 -23.41936 -22.88938 -21.85341 -21.08962 -19.43648 -18.75057 -17.80312 -17.67754 -16.96563 -16.75051 -16.28758 -16.10178 -15.68405 -15.63517 -15.31747 -14.86751 -14.10655 -14.01215 -13.65378 -13.53920 -13.35455 -13.12232 -12.95444 -12.86333 -12.72145 -12.46809 -12.08774 -12.03900 -12.02032 -11.95064 -11.67837 -11.49173 -11.35736 -11.29376 -10.71155 -9.60497 -8.92731 -8.58609 -7.73526 -5.16238 0.37479 0.54297 1.44177 1.45283 1.54645 2.39200 2.41141 2.49926 2.79778 3.34876 3.73718 3.90949 3.93978 4.10430 4.13156 4.29355 4.32464 4.39183 4.39884 4.44120 4.48029 4.53282 4.57080 4.71840 4.73701 4.76315 4.81494 4.93184 5.09547 5.22927 5.26624 5.35788 5.44206 5.53818 5.72337 5.77267 5.86030 5.92973 6.14922 6.36270 6.66797 7.16267 7.83660 8.46940 9.27884 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.006128 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.991039 B = 4567.745939 C = 5186.031368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.074 3.926 4 C -0.174 4.174 5 C -0.095 4.095 6 C -0.082 4.082 7 C 0.188 3.812 8 H 0.044 0.956 9 C -0.108 4.108 10 C -0.134 4.134 11 C 0.152 3.848 12 N -0.604 5.604 13 C -0.214 4.214 14 H 0.070 0.930 15 C -0.063 4.063 16 N -0.947 5.947 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.291 1.291 21 C -0.169 4.169 22 C 0.083 3.917 23 O -0.328 6.328 24 C 0.019 3.981 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.065 0.935 34 H -0.014 1.014 35 H 0.072 0.928 36 H 0.245 0.755 37 H 0.151 0.849 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 -12.638 8.348 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.029 3.971 4 C -0.193 4.193 5 C -0.114 4.114 6 C -0.084 4.084 7 C 0.081 3.919 8 H 0.062 0.938 9 C -0.146 4.146 10 C -0.172 4.172 11 C 0.027 3.973 12 N -0.328 5.328 13 C -0.344 4.344 14 H 0.088 0.912 15 C -0.256 4.256 16 N -0.597 5.597 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.222 1.222 20 H -0.218 1.218 21 C -0.188 4.188 22 C 0.038 3.962 23 O -0.243 6.243 24 C -0.076 4.076 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.004 0.996 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.168 0.832 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.294 -12.922 8.168 15.638 hybrid contribution -0.650 0.560 -1.275 1.537 sum 2.644 -12.362 6.894 14.399 Atomic orbital electron populations 1.23297 0.76986 1.05397 1.01819 1.86080 1.22873 1.25809 1.89532 1.18314 0.89514 0.85290 1.04009 1.21162 1.00512 0.90978 1.06610 1.20630 0.94729 0.96452 0.99616 1.20535 0.93920 0.95954 0.98029 1.20129 0.93545 0.86321 0.91920 0.93836 1.22545 1.02571 0.95279 0.94159 1.22880 0.99831 0.96116 0.98388 1.21762 0.92444 0.93116 0.89981 1.44762 1.62330 1.21874 1.03799 1.19232 1.27144 1.04352 0.83630 0.91245 1.25417 1.01148 0.97407 1.01589 1.70044 1.42450 1.12524 1.34691 0.85181 0.76963 0.77249 0.81052 1.19813 1.22195 1.21771 1.21052 1.00908 0.89905 1.06924 1.18309 0.88455 0.86294 1.03137 1.86091 1.20482 1.28297 1.89419 1.23319 0.76948 1.05290 1.02016 0.91894 0.92702 0.85917 0.83626 0.87882 0.91528 0.88790 0.89986 0.91650 0.99596 0.90977 0.94532 0.83164 0.92565 0.91597 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.33 -10.33 10.28 -79.56 -0.82 -11.15 16 3 C 0.07 2.56 6.70 22.57 0.15 2.71 16 4 C -0.17 -6.07 9.04 22.35 0.20 -5.87 16 5 C -0.10 -3.83 9.15 22.27 0.20 -3.62 16 6 C -0.08 -3.15 4.56 -19.86 -0.09 -3.24 16 7 C 0.19 7.52 3.31 44.59 0.15 7.67 16 8 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 9 C -0.11 -3.54 6.46 31.78 0.21 -3.34 16 10 C -0.13 -4.81 7.09 31.99 0.23 -4.59 16 11 C 0.15 7.34 5.89 86.85 0.51 7.85 16 12 N -0.60 -30.07 2.38 -672.38 -1.60 -31.67 16 13 C -0.21 -11.87 9.82 84.03 0.82 -11.05 16 14 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 15 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 16 N -0.95 -56.01 10.09 21.65 0.22 -55.79 16 17 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 C -0.17 -5.66 8.66 22.35 0.19 -5.46 16 22 C 0.08 2.85 6.70 22.57 0.15 3.00 16 23 O -0.33 -10.11 10.28 -79.65 -0.82 -10.93 16 24 C 0.02 0.38 9.81 113.37 1.11 1.49 16 25 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 26 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 27 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.15 4.32 6.30 -2.91 -0.02 4.30 16 29 H 0.10 4.68 7.68 -2.91 -0.02 4.66 16 30 H 0.07 2.15 7.81 -2.39 -0.02 2.13 16 31 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 35 H 0.07 4.00 5.87 -2.39 -0.01 3.99 16 36 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.15 4.19 6.29 -2.91 -0.02 4.17 16 38 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 39 H 0.07 1.17 7.66 -2.38 -0.02 1.15 16 40 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -68.30 324.00 5.45 -62.85 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.03 Total: 14.27 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.42 Total: -16.03 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -1.38 Total: -87.46 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.64 Total: -22.08 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -68.30 5.45 -62.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045915174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.014 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds