Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 111.00144 * 2 1 4 4 C 1.52993 * 109.47105 * 293.95042 * 3 2 1 5 5 C 1.50695 * 109.47410 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00477 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00285 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99707 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47235 * 90.00481 * 9 7 5 11 11 H 1.48503 * 109.47534 * 210.00261 * 9 7 5 12 12 H 1.48500 * 109.47306 * 330.00157 * 9 7 5 13 13 C 1.46901 * 110.99888 * 123.95418 * 2 1 3 14 14 C 1.50698 * 109.47148 * 66.04414 * 13 2 1 15 15 C 1.38250 * 119.94408 * 90.00109 * 14 13 2 16 16 C 1.38197 * 120.11470 * 179.75136 * 15 14 13 17 17 C 1.38711 * 120.06659 * 0.24891 * 16 15 14 18 18 C 1.38973 * 119.81785 * 359.93957 * 17 16 15 19 19 C 1.38204 * 119.94370 * 270.25388 * 14 13 2 20 20 O 1.36105 * 120.78446 * 180.21837 * 18 17 16 21 21 C 1.43183 * 116.69352 * 342.70476 * 20 18 17 22 22 C 1.53478 * 108.23250 * 46.26316 * 21 20 18 23 23 O 1.36107 * 119.39787 * 179.80055 * 17 16 15 24 24 H 1.09007 * 109.46917 * 296.04820 * 1 2 3 25 25 H 1.09001 * 109.46974 * 56.04519 * 1 2 3 26 26 H 1.08994 * 109.47172 * 176.04946 * 1 2 3 27 27 H 1.09000 * 109.47130 * 53.95727 * 3 2 1 28 28 H 1.08997 * 109.47182 * 173.95281 * 3 2 1 29 29 H 1.09000 * 109.47686 * 300.00345 * 4 3 2 30 30 H 1.09005 * 109.47376 * 60.00501 * 4 3 2 31 31 H 0.97000 * 120.00368 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46959 * 306.04626 * 13 2 1 33 33 H 1.09001 * 109.47154 * 186.04746 * 13 2 1 34 34 H 1.08002 * 119.94561 * 0.03259 * 15 14 13 35 35 H 1.07998 * 119.97290 * 180.26724 * 16 15 14 36 36 H 1.07991 * 119.96550 * 0.03922 * 19 14 13 37 37 H 1.08996 * 109.71545 * 286.57588 * 21 20 18 38 38 H 1.09004 * 109.71088 * 165.93942 * 21 20 18 39 39 H 1.08997 * 109.70826 * 180.57117 * 22 21 20 40 40 H 1.08996 * 109.74284 * 59.96401 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3182 5 6 2.1711 3.4644 -1.3181 6 1 2.7192 3.8325 -0.4633 7 6 1.9652 4.2820 -2.4090 8 7 2.4364 5.5098 -2.4090 9 14 1.0179 3.6452 -3.8877 10 1 -0.4280 3.9340 -3.7111 11 1 1.5101 4.3164 -5.1175 12 1 1.2185 2.1789 -4.0100 13 6 1.9955 -0.7660 1.1376 14 6 1.6369 -2.2204 0.9729 15 6 2.4948 -3.0708 0.3004 16 6 2.1719 -4.4062 0.1517 17 6 0.9833 -4.8960 0.6727 18 6 0.1191 -4.0403 1.3453 19 6 0.4486 -2.7008 1.4898 20 8 -1.0502 -4.5008 1.8681 21 6 -1.5209 -5.7616 1.3793 22 6 -0.3415 -6.7436 1.3697 23 8 0.6769 -6.2127 0.5149 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1083 29 1 2.0659 1.5014 -2.1492 30 1 0.5473 2.0845 -1.4265 31 1 2.2919 6.0848 -3.1767 32 1 1.5611 -0.3872 2.0628 33 1 3.0798 -0.6611 1.1757 34 1 3.4210 -2.6917 -0.1056 35 1 2.8457 -5.0694 -0.3703 36 1 -0.2220 -2.0334 2.0106 37 1 -1.9082 -5.6422 0.3674 38 1 -2.3078 -6.1386 2.0326 39 1 -0.6717 -7.7109 0.9911 40 1 0.0501 -6.8586 2.3804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049967694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = -43.556342 kcal Electronic energy + Delta-G solvation = -21099.043489 eV Core-core repulsion = 17879.536403 eV Total energy + Delta-G solvation = -3219.507086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39312 -38.62539 -37.41734 -36.61926 -33.10714 -31.76435 -31.00608 -29.92337 -28.92415 -26.81532 -25.64528 -24.43225 -22.83076 -22.08396 -20.41093 -19.83980 -18.70762 -17.41323 -17.27711 -16.84081 -15.67285 -15.33692 -15.04419 -14.88104 -14.67296 -14.58414 -14.13331 -13.97494 -13.90681 -13.39501 -13.09321 -12.75022 -12.50548 -12.06291 -11.78925 -11.48407 -11.34815 -11.25145 -11.20285 -11.15174 -10.88639 -10.61575 -9.90870 -9.87122 -9.70895 -9.18223 -8.67925 -8.50255 -8.12610 -7.80609 -6.02117 -4.00067 1.20403 1.26101 2.81023 3.01258 3.34282 3.41847 3.48583 3.60079 3.95206 4.46682 4.48905 4.49162 4.56838 4.58216 4.87546 4.89590 5.11136 5.14462 5.28105 5.32520 5.35916 5.49569 5.66774 5.80739 5.82066 5.92453 6.03974 6.08817 6.19363 6.33799 6.38185 6.54681 6.62066 6.72416 6.79073 7.17322 7.26771 7.32875 7.60230 7.65260 7.87478 8.55390 9.02092 9.60626 11.11260 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.003298 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.566850 B = 8488.758803 C = 8604.696393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.070 3.930 4 C -0.007 4.007 5 C -0.521 4.521 6 H 0.071 0.929 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.262 1.262 13 C 0.093 3.907 14 C -0.062 4.062 15 C -0.092 4.092 16 C -0.114 4.114 17 C 0.042 3.958 18 C 0.046 3.954 19 C -0.106 4.106 20 O -0.309 6.309 21 C 0.021 3.979 22 C 0.021 3.979 23 O -0.310 6.310 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -25.266 8.922 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.056 4.056 4 C -0.045 4.045 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.187 1.187 13 C -0.035 4.035 14 C -0.063 4.063 15 C -0.111 4.111 16 C -0.133 4.133 17 C -0.002 4.002 18 C 0.001 3.999 19 C -0.126 4.126 20 O -0.224 6.224 21 C -0.055 4.055 22 C -0.054 4.054 23 O -0.225 6.225 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.680 -25.361 8.397 27.312 hybrid contribution -1.021 0.017 -0.064 1.023 sum -6.700 -25.344 8.333 27.507 Atomic orbital electron populations 1.22469 0.88123 1.01339 1.00820 1.62122 1.07716 1.15764 1.40741 1.22161 0.99143 0.84786 0.99517 1.19576 0.96226 0.95660 0.93049 1.21091 1.35555 0.95506 1.03770 0.91125 1.24992 0.95359 0.94655 0.98378 1.69914 1.46387 1.07153 1.30923 0.86775 0.80273 0.79883 0.82398 1.20405 1.21440 1.18685 1.21034 1.00769 0.88863 0.92798 1.19616 0.93518 0.95883 0.97298 1.20851 1.00351 0.91698 0.98179 1.20424 0.94226 0.96168 1.02467 1.18873 0.95409 0.82989 1.02965 1.18806 0.86685 0.93310 1.01051 1.20341 0.97863 0.91566 1.02786 1.86307 1.36374 1.36999 1.62697 1.23601 0.96803 0.83221 1.01879 1.23587 0.88239 0.97891 0.95731 1.86296 1.55847 1.21881 1.58431 0.96097 0.90757 0.92054 0.95489 0.91375 0.95671 0.97030 0.92753 0.94190 0.89683 0.84678 0.84910 0.85105 0.90542 0.86262 0.86295 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.93 60.07 0.54 0.87 16 2 N -0.54 -9.36 4.75 -244.37 -1.16 -10.52 16 3 C 0.07 1.42 4.90 -3.83 -0.02 1.40 16 4 C -0.01 -0.18 3.97 -27.89 -0.11 -0.29 16 5 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 6 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 9 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.09 1.32 5.12 -4.98 -0.03 1.29 16 14 C -0.06 -0.83 4.89 -104.63 -0.51 -1.34 16 15 C -0.09 -1.15 9.69 -39.59 -0.38 -1.53 16 16 C -0.11 -1.38 9.96 -39.42 -0.39 -1.77 16 17 C 0.04 0.54 6.49 -39.13 -0.25 0.28 16 18 C 0.05 0.60 6.49 -39.14 -0.25 0.34 16 19 C -0.11 -1.40 7.87 -39.42 -0.31 -1.71 16 20 O -0.31 -3.64 10.42 -32.86 -0.34 -3.98 16 21 C 0.02 0.16 7.26 37.41 0.27 0.43 16 22 C 0.02 0.16 7.26 37.41 0.27 0.43 16 23 O -0.31 -3.51 10.42 -32.86 -0.34 -3.85 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 1.31 6.30 -51.93 -0.33 0.98 16 26 H 0.06 0.92 6.15 -51.93 -0.32 0.60 16 27 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 29 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 30 H 0.01 0.28 5.90 -51.93 -0.31 -0.03 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 34 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.13 1.63 8.01 -52.49 -0.42 1.21 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -32.91 324.40 -8.42 -41.33 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.95 Total: -2.92 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.61 Total: -14.99 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.39 Total: -37.90 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.68 Total: -7.83 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.91 -8.42 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049967694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.226 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds