Wall clock time and date at job start Mon Mar 30 2020 01:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 111.00144 * 2 1 4 4 C 1.52993 * 109.47105 * 293.95042 * 3 2 1 5 5 C 1.50695 * 109.47410 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00477 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00285 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99707 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47235 * 90.00481 * 9 7 5 11 11 H 1.48503 * 109.47534 * 210.00261 * 9 7 5 12 12 H 1.48500 * 109.47306 * 330.00157 * 9 7 5 13 13 C 1.46901 * 110.99888 * 123.95418 * 2 1 3 14 14 C 1.50698 * 109.47148 * 66.04414 * 13 2 1 15 15 C 1.38250 * 119.94408 * 90.00109 * 14 13 2 16 16 C 1.38197 * 120.11470 * 179.75136 * 15 14 13 17 17 C 1.38711 * 120.06659 * 0.24891 * 16 15 14 18 18 C 1.38973 * 119.81785 * 359.93957 * 17 16 15 19 19 C 1.38204 * 119.94370 * 270.25388 * 14 13 2 20 20 O 1.36105 * 120.78446 * 180.21837 * 18 17 16 21 21 C 1.43183 * 116.69352 * 342.70476 * 20 18 17 22 22 C 1.53478 * 108.23250 * 46.26316 * 21 20 18 23 23 O 1.36107 * 119.39787 * 179.80055 * 17 16 15 24 24 H 1.09007 * 109.46917 * 296.04820 * 1 2 3 25 25 H 1.09001 * 109.46974 * 56.04519 * 1 2 3 26 26 H 1.08994 * 109.47172 * 176.04946 * 1 2 3 27 27 H 1.09000 * 109.47130 * 53.95727 * 3 2 1 28 28 H 1.08997 * 109.47182 * 173.95281 * 3 2 1 29 29 H 1.09000 * 109.47686 * 300.00345 * 4 3 2 30 30 H 1.09005 * 109.47376 * 60.00501 * 4 3 2 31 31 H 0.97000 * 120.00368 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46959 * 306.04626 * 13 2 1 33 33 H 1.09001 * 109.47154 * 186.04746 * 13 2 1 34 34 H 1.08002 * 119.94561 * 0.03259 * 15 14 13 35 35 H 1.07998 * 119.97290 * 180.26724 * 16 15 14 36 36 H 1.07991 * 119.96550 * 0.03922 * 19 14 13 37 37 H 1.08996 * 109.71545 * 286.57588 * 21 20 18 38 38 H 1.09004 * 109.71088 * 165.93942 * 21 20 18 39 39 H 1.08997 * 109.70826 * 180.57117 * 22 21 20 40 40 H 1.08996 * 109.74284 * 59.96401 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3182 5 6 2.1711 3.4644 -1.3181 6 1 2.7192 3.8325 -0.4633 7 6 1.9652 4.2820 -2.4090 8 7 2.4364 5.5098 -2.4090 9 14 1.0179 3.6452 -3.8877 10 1 -0.4280 3.9340 -3.7111 11 1 1.5101 4.3164 -5.1175 12 1 1.2185 2.1789 -4.0100 13 6 1.9955 -0.7660 1.1376 14 6 1.6369 -2.2204 0.9729 15 6 2.4948 -3.0708 0.3004 16 6 2.1719 -4.4062 0.1517 17 6 0.9833 -4.8960 0.6727 18 6 0.1191 -4.0403 1.3453 19 6 0.4486 -2.7008 1.4898 20 8 -1.0502 -4.5008 1.8681 21 6 -1.5209 -5.7616 1.3793 22 6 -0.3415 -6.7436 1.3697 23 8 0.6769 -6.2127 0.5149 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1083 29 1 2.0659 1.5014 -2.1492 30 1 0.5473 2.0845 -1.4265 31 1 2.2919 6.0848 -3.1767 32 1 1.5611 -0.3872 2.0628 33 1 3.0798 -0.6611 1.1757 34 1 3.4210 -2.6917 -0.1056 35 1 2.8457 -5.0694 -0.3703 36 1 -0.2220 -2.0334 2.0106 37 1 -1.9082 -5.6422 0.3674 38 1 -2.3078 -6.1386 2.0326 39 1 -0.6717 -7.7109 0.9911 40 1 0.0501 -6.8586 2.3804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049967694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:11 Heat of formation + Delta-G solvation = -65.366145 kcal Electronic energy + Delta-G solvation = -21099.989233 eV Core-core repulsion = 17879.536403 eV Total energy + Delta-G solvation = -3220.452830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.20889 -39.68159 -38.22501 -37.87045 -35.12702 -33.06009 -31.95783 -31.35691 -29.90126 -28.05080 -27.06854 -25.49162 -24.00978 -23.29984 -21.59481 -21.25346 -19.53419 -18.99841 -18.21473 -18.10534 -16.70447 -16.47083 -16.28870 -16.01958 -15.95847 -15.62619 -15.37421 -15.05854 -14.86655 -14.78952 -14.40309 -14.32474 -13.83505 -13.38893 -12.97167 -12.87569 -12.77909 -12.52943 -12.39811 -12.11533 -11.97498 -11.82535 -11.70010 -11.54318 -11.38702 -11.35286 -10.74005 -9.61827 -9.23023 -8.98290 -8.28738 -6.32356 0.24949 0.33277 1.36553 1.39114 1.52351 2.05244 2.30063 2.37613 2.62377 3.07047 3.26446 3.31433 3.68060 3.83025 3.94918 4.09074 4.12060 4.29745 4.34310 4.34890 4.44829 4.51477 4.57536 4.59446 4.63343 4.75909 4.78326 4.94365 4.97999 5.07347 5.13628 5.16579 5.31845 5.49418 5.61839 5.64571 5.68126 5.91608 6.13483 6.21359 6.32511 6.42659 6.75563 7.32386 8.87929 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.003298 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.566850 B = 8488.758803 C = 8604.696393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.082 3.918 4 C -0.001 4.001 5 C -0.531 4.531 6 H 0.035 0.965 7 C 0.007 3.993 8 N -0.951 5.951 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.249 1.249 13 C 0.096 3.904 14 C -0.072 4.072 15 C -0.096 4.096 16 C -0.119 4.119 17 C 0.037 3.963 18 C 0.037 3.963 19 C -0.114 4.114 20 O -0.325 6.325 21 C 0.013 3.987 22 C 0.015 3.985 23 O -0.323 6.323 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.076 0.924 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -27.940 8.589 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.045 4.045 4 C -0.039 4.039 5 C -0.569 4.569 6 H 0.053 0.947 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.173 1.173 13 C -0.031 4.031 14 C -0.073 4.073 15 C -0.115 4.115 16 C -0.137 4.137 17 C -0.008 4.008 18 C -0.008 4.008 19 C -0.134 4.134 20 O -0.241 6.241 21 C -0.061 4.061 22 C -0.059 4.059 23 O -0.238 6.238 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.094 0.906 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.893 -28.067 8.084 30.010 hybrid contribution -0.661 0.757 0.140 1.014 sum -7.553 -27.310 8.225 29.504 Atomic orbital electron populations 1.22451 0.87512 1.02009 1.00531 1.62032 1.08357 1.13860 1.42730 1.21852 0.99219 0.86348 0.97069 1.19450 0.96056 0.93246 0.95107 1.21428 1.35032 0.97830 1.02649 0.94713 1.25948 0.96487 0.94753 1.01818 1.70057 1.48164 1.08717 1.32216 0.85669 0.79031 0.79846 0.78187 1.19206 1.20879 1.17287 1.21047 1.01183 0.89067 0.91805 1.19524 0.94105 0.95296 0.98390 1.21012 1.00621 0.91918 0.97936 1.20652 0.94479 0.96276 1.02340 1.19050 0.95476 0.83729 1.02566 1.18912 0.87353 0.93393 1.01128 1.20407 0.97911 0.92008 1.03030 1.86277 1.35872 1.38915 1.62996 1.23954 0.97648 0.81778 1.02751 1.23938 0.87179 0.98976 0.95824 1.86272 1.57063 1.21092 1.59407 0.95340 0.92208 0.90694 0.96063 0.91404 0.96082 0.96523 0.92465 0.93525 0.88900 0.83695 0.83303 0.84955 0.90570 0.82929 0.82884 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 8.93 127.69 1.14 1.86 16 2 N -0.55 -18.29 4.75 -927.05 -4.41 -22.69 16 3 C 0.08 3.30 4.90 86.30 0.42 3.72 16 4 C 0.00 -0.04 3.97 29.84 0.12 0.08 16 5 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 6 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 7 C 0.01 0.40 5.47 84.66 0.46 0.87 16 8 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 9 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 13 C 0.10 2.60 5.12 85.56 0.44 3.04 16 14 C -0.07 -1.84 4.89 -19.87 -0.10 -1.93 16 15 C -0.10 -2.26 9.69 22.26 0.22 -2.04 16 16 C -0.12 -2.68 9.96 22.37 0.22 -2.46 16 17 C 0.04 0.88 6.49 22.56 0.15 1.02 16 18 C 0.04 0.91 6.49 22.56 0.15 1.06 16 19 C -0.11 -2.88 7.87 22.37 0.18 -2.70 16 20 O -0.33 -7.13 10.42 -82.52 -0.86 -7.99 16 21 C 0.01 0.17 7.26 72.14 0.52 0.69 16 22 C 0.02 0.19 7.26 72.14 0.52 0.71 16 23 O -0.32 -6.67 10.42 -82.54 -0.86 -7.53 16 24 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.06 2.03 6.30 -2.39 -0.02 2.01 16 26 H 0.07 2.14 6.15 -2.39 -0.01 2.12 16 27 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 28 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 29 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 30 H 0.02 0.78 5.90 -2.38 -0.01 0.77 16 31 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.05 1.21 8.07 -2.38 -0.02 1.19 16 33 H 0.09 2.35 7.87 -2.39 -0.02 2.33 16 34 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.13 3.17 8.01 -2.91 -0.02 3.15 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.15 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.06 324.40 1.71 -69.35 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.97 Total: 8.55 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.69 Total: -26.88 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -4.11 Total: -82.70 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -1.72 Total: -15.52 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -71.06 1.71 -69.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049967694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.985 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds