Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00358 * 2 1 4 4 O 1.20828 * 120.00008 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00435 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47477 * 300.00047 * 5 3 2 7 7 N 1.46901 * 109.47358 * 179.97438 * 5 3 2 8 8 C 1.46899 * 110.99960 * 85.00253 * 7 5 3 9 9 C 1.53002 * 109.46999 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.46864 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46658 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99529 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00337 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00004 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47029 * 90.00148 * 15 13 11 17 17 H 1.48493 * 109.47279 * 210.00423 * 15 13 11 18 18 H 1.48500 * 109.46889 * 330.00260 * 15 13 11 19 19 C 1.50703 * 109.47313 * 59.99594 * 5 3 2 20 20 C 1.38235 * 120.00292 * 260.00391 * 19 5 3 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 5 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 79.97683 * 19 5 3 25 25 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47141 * 300.00414 * 1 2 3 27 27 H 1.09003 * 109.46434 * 60.00584 * 1 2 3 28 28 H 1.00893 * 111.00055 * 321.04642 * 7 5 3 29 29 H 1.09002 * 109.46800 * 299.99937 * 8 7 5 30 30 H 1.09001 * 109.47305 * 59.99447 * 8 7 5 31 31 H 1.08998 * 109.46937 * 299.99075 * 9 8 7 32 32 H 1.08998 * 109.47125 * 59.99989 * 9 8 7 33 33 H 1.09002 * 109.47022 * 299.99804 * 10 9 8 34 34 H 1.08993 * 109.47004 * 59.99696 * 10 9 8 35 35 H 0.97003 * 120.00493 * 180.02562 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 5 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7809 0.8908 7 7 3.9829 2.6835 -0.0002 8 6 4.0170 3.2231 1.3657 9 6 4.4535 4.6889 1.3242 10 6 4.4884 5.2511 2.7468 11 6 4.9190 6.6947 2.7059 12 1 5.1455 7.1641 1.7601 13 6 5.0237 7.4162 3.8762 14 7 4.7484 6.8444 5.0281 15 14 5.5581 9.2054 3.8257 16 1 4.3626 10.0754 3.6880 17 1 6.2745 9.5437 5.0817 18 1 6.4622 9.4195 2.6672 19 6 4.1057 0.5913 -1.2295 20 6 4.6001 -0.6968 -1.1439 21 6 5.0944 -1.3238 -2.2723 22 6 5.0934 -0.6631 -3.4865 23 6 4.5977 0.6244 -3.5725 24 6 4.1055 1.2523 -2.4435 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 3.3832 3.2375 -0.5929 29 1 3.0237 3.1525 1.8091 30 1 4.7241 2.6498 1.9653 31 1 5.4467 4.7598 0.8807 32 1 3.7461 5.2619 0.7248 33 1 3.4951 5.1802 3.1900 34 1 5.1956 4.6782 3.3466 35 1 4.8218 7.3521 5.8514 36 1 4.6002 -1.2131 -0.1953 37 1 5.4810 -2.3300 -2.2054 38 1 5.4836 -1.1514 -4.3673 39 1 4.5973 1.1408 -4.5210 40 1 3.7192 2.2586 -2.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050509624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = -70.706958 kcal Electronic energy + Delta-G solvation = -20889.372558 eV Core-core repulsion = 17668.688132 eV Total energy + Delta-G solvation = -3220.684425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89257 -39.19253 -37.14422 -35.86050 -33.82040 -32.21412 -31.03773 -30.27936 -28.44032 -26.84130 -25.10854 -22.94742 -22.39687 -22.09175 -20.62505 -20.03979 -17.97353 -17.22109 -17.04365 -16.42064 -16.22401 -15.33587 -15.24151 -14.71572 -14.44446 -14.06766 -13.94903 -13.55845 -13.41893 -13.32677 -12.78556 -12.46717 -12.26334 -12.06685 -11.82154 -11.55563 -11.24796 -11.11678 -10.94195 -10.88294 -10.75329 -10.57714 -10.48554 -9.69649 -9.35487 -9.05264 -9.01543 -8.85208 -8.51624 -8.30934 -5.96246 -3.98142 1.15972 1.31324 2.05825 2.59857 3.35120 3.40910 3.44892 3.64253 4.19832 4.48927 4.51237 4.70311 4.77183 4.90963 4.94111 5.00741 5.02045 5.07523 5.34046 5.39211 5.39688 5.49977 5.72575 5.79166 5.86911 5.92501 6.19938 6.30669 6.31593 6.39582 6.42015 6.64941 6.72583 6.86215 7.10470 7.16156 7.38823 7.59829 7.71747 7.86545 8.04079 8.47202 9.08863 9.65633 11.15279 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.003480 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.051393 B = 8045.173289 C = 8861.129676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.437 3.563 4 O -0.500 6.500 5 C 0.136 3.864 6 H 0.124 0.876 7 N -0.653 5.653 8 C 0.053 3.947 9 C -0.105 4.105 10 C 0.023 3.977 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.069 4.069 20 C -0.099 4.099 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.092 4.092 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.351 0.649 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 -19.332 -14.971 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.277 3.723 4 O -0.387 6.387 5 C 0.023 3.977 6 H 0.142 0.858 7 N -0.285 5.285 8 C -0.075 4.075 9 C -0.143 4.143 10 C -0.015 4.015 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.070 4.070 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.111 4.111 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.173 0.827 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.620 -19.122 -14.782 24.439 hybrid contribution -0.955 1.194 0.338 1.566 sum -4.575 -17.928 -14.444 23.473 Atomic orbital electron populations 1.23265 0.76756 1.03524 1.02565 1.86549 1.23172 1.33573 1.83780 1.25234 0.93357 0.81675 0.72061 1.90705 1.66698 1.36321 1.44978 1.20385 0.84637 0.93614 0.99076 0.85846 1.61060 1.54464 0.99372 1.13616 1.22318 0.99867 0.98366 0.86988 1.21606 1.00387 0.91094 1.01231 1.19062 0.97112 0.95505 0.89828 1.21250 1.45200 0.96369 0.92795 0.92630 1.25029 0.95578 0.98359 0.95577 1.69969 1.49499 1.36552 0.97632 0.86588 0.78719 0.85259 0.77409 1.20719 1.21255 1.19834 1.19321 1.00171 0.94227 0.93264 1.20989 0.97831 0.93922 0.98992 1.21076 1.00292 0.99982 0.92704 1.21166 0.99623 0.95136 0.97752 1.21127 0.99263 0.95249 0.98404 1.20988 0.98568 0.99589 0.91909 0.88205 0.91849 0.92028 0.82748 0.94861 0.90995 0.92366 0.93391 0.96751 0.96516 0.93061 0.85726 0.85966 0.86206 0.86011 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.32 10.48 -39.24 -0.41 -4.73 16 3 C 0.44 6.11 7.07 36.00 0.25 6.36 16 4 O -0.50 -8.40 15.05 -18.75 -0.28 -8.68 16 5 C 0.14 1.76 2.70 -70.02 -0.19 1.57 16 6 H 0.12 1.46 7.66 -51.93 -0.40 1.06 16 7 N -0.65 -9.90 5.55 -109.18 -0.61 -10.51 16 8 C 0.05 0.94 5.38 -3.82 -0.02 0.92 16 9 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 15 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.07 -0.82 4.88 -104.62 -0.51 -1.33 16 20 C -0.10 -1.01 9.67 -39.59 -0.38 -1.39 16 21 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 24 C -0.09 -1.07 9.32 -39.58 -0.37 -1.44 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 28 H 0.35 5.42 7.09 -39.30 -0.28 5.14 16 29 H 0.03 0.63 7.62 -51.93 -0.40 0.23 16 30 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.12 1.06 8.04 -52.49 -0.42 0.63 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.42 7.25 -52.49 -0.38 1.04 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -32.92 342.82 -8.52 -41.44 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.06 Total: 1.27 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.04 Total: -14.29 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.13 Total: -37.25 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.69 Total: -13.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.92 -8.52 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050509624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.266 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds