Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00358 * 2 1 4 4 O 1.20828 * 120.00008 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00435 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47477 * 300.00047 * 5 3 2 7 7 N 1.46901 * 109.47358 * 179.97438 * 5 3 2 8 8 C 1.46899 * 110.99960 * 85.00253 * 7 5 3 9 9 C 1.53002 * 109.46999 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.46864 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46658 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99529 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00337 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00004 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47029 * 90.00148 * 15 13 11 17 17 H 1.48493 * 109.47279 * 210.00423 * 15 13 11 18 18 H 1.48500 * 109.46889 * 330.00260 * 15 13 11 19 19 C 1.50703 * 109.47313 * 59.99594 * 5 3 2 20 20 C 1.38235 * 120.00292 * 260.00391 * 19 5 3 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 5 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 79.97683 * 19 5 3 25 25 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47141 * 300.00414 * 1 2 3 27 27 H 1.09003 * 109.46434 * 60.00584 * 1 2 3 28 28 H 1.00893 * 111.00055 * 321.04642 * 7 5 3 29 29 H 1.09002 * 109.46800 * 299.99937 * 8 7 5 30 30 H 1.09001 * 109.47305 * 59.99447 * 8 7 5 31 31 H 1.08998 * 109.46937 * 299.99075 * 9 8 7 32 32 H 1.08998 * 109.47125 * 59.99989 * 9 8 7 33 33 H 1.09002 * 109.47022 * 299.99804 * 10 9 8 34 34 H 1.08993 * 109.47004 * 59.99696 * 10 9 8 35 35 H 0.97003 * 120.00493 * 180.02562 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 5 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7809 0.8908 7 7 3.9829 2.6835 -0.0002 8 6 4.0170 3.2231 1.3657 9 6 4.4535 4.6889 1.3242 10 6 4.4884 5.2511 2.7468 11 6 4.9190 6.6947 2.7059 12 1 5.1455 7.1641 1.7601 13 6 5.0237 7.4162 3.8762 14 7 4.7484 6.8444 5.0281 15 14 5.5581 9.2054 3.8257 16 1 4.3626 10.0754 3.6880 17 1 6.2745 9.5437 5.0817 18 1 6.4622 9.4195 2.6672 19 6 4.1057 0.5913 -1.2295 20 6 4.6001 -0.6968 -1.1439 21 6 5.0944 -1.3238 -2.2723 22 6 5.0934 -0.6631 -3.4865 23 6 4.5977 0.6244 -3.5725 24 6 4.1055 1.2523 -2.4435 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 3.3832 3.2375 -0.5929 29 1 3.0237 3.1525 1.8091 30 1 4.7241 2.6498 1.9653 31 1 5.4467 4.7598 0.8807 32 1 3.7461 5.2619 0.7248 33 1 3.4951 5.1802 3.1900 34 1 5.1956 4.6782 3.3466 35 1 4.8218 7.3521 5.8514 36 1 4.6002 -1.2131 -0.1953 37 1 5.4810 -2.3300 -2.2054 38 1 5.4836 -1.1514 -4.3673 39 1 4.5973 1.1408 -4.5210 40 1 3.7192 2.2586 -2.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050509624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -90.223124 kcal Electronic energy + Delta-G solvation = -20890.218842 eV Core-core repulsion = 17668.688132 eV Total energy + Delta-G solvation = -3221.530710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95218 -40.00842 -38.25802 -37.15918 -35.62441 -33.86624 -31.89416 -31.60244 -29.38925 -28.31080 -26.53676 -24.38254 -23.36221 -23.14566 -22.07320 -21.36801 -19.03026 -18.55567 -18.17653 -17.97007 -17.33497 -16.59547 -16.30529 -16.12283 -15.93492 -15.30309 -15.03504 -14.57350 -14.45596 -14.27892 -14.16676 -13.68198 -13.60442 -13.41983 -13.25572 -12.98298 -12.77096 -12.50181 -12.39723 -12.07653 -11.93716 -11.89317 -11.81547 -11.58938 -11.42401 -11.14685 -10.56225 -9.84449 -9.74341 -9.64116 -8.20848 -6.31963 0.36868 0.56284 0.97855 1.39527 1.41290 1.52689 1.64642 2.40527 2.77242 3.11182 3.12240 3.54904 3.79238 3.84077 4.17081 4.19913 4.23023 4.24038 4.25965 4.29220 4.36912 4.62392 4.65424 4.67866 4.75484 4.90828 4.97935 5.06485 5.19866 5.20041 5.20863 5.47189 5.56696 5.63051 5.67036 5.71813 5.78528 5.84151 6.07882 6.14250 6.24668 6.53496 6.84336 7.37144 8.91238 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.003480 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.051393 B = 8045.173289 C = 8861.129676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.440 3.560 4 O -0.536 6.536 5 C 0.138 3.862 6 H 0.136 0.864 7 N -0.649 5.649 8 C 0.067 3.933 9 C -0.091 4.091 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.059 0.941 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.262 1.262 19 C -0.085 4.085 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.113 4.113 25 H 0.136 0.864 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.349 0.651 29 H 0.019 0.981 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.044 0.956 33 H -0.013 1.013 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -20.452 -16.382 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.282 3.718 4 O -0.425 6.425 5 C 0.025 3.975 6 H 0.154 0.846 7 N -0.281 5.281 8 C -0.061 4.061 9 C -0.129 4.129 10 C -0.011 4.011 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.131 4.131 25 H 0.154 0.846 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.170 0.830 29 H 0.037 0.963 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.005 0.995 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.868 -20.274 -16.212 26.117 hybrid contribution -1.233 1.425 0.740 2.025 sum -4.101 -18.849 -15.472 24.729 Atomic orbital electron populations 1.23562 0.75129 1.05829 1.02224 1.86531 1.24739 1.32364 1.83158 1.25372 0.93734 0.81661 0.71052 1.90690 1.67515 1.37493 1.46850 1.20435 0.84266 0.92157 1.00629 0.84624 1.60979 1.54844 1.00670 1.11571 1.22010 0.99046 0.96358 0.88727 1.21345 1.00579 0.93236 0.97712 1.18955 0.94740 0.94964 0.92463 1.21688 1.45559 0.97697 0.93235 0.92234 1.26004 0.95369 1.03492 0.95061 1.70098 1.50269 1.38625 0.98415 0.85419 0.78594 0.78970 0.77902 1.19880 1.20519 1.18652 1.19276 1.01643 0.95144 0.92546 1.21236 0.97483 0.93327 1.00338 1.21444 0.99344 1.01083 0.92191 1.21542 0.98539 0.94659 0.98842 1.21381 0.98957 0.95940 0.98506 1.21067 0.99718 0.99584 0.92749 0.84569 0.92480 0.92164 0.83027 0.96307 0.90214 0.92090 0.93672 0.99488 0.98440 0.92733 0.84198 0.83270 0.83545 0.84435 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.30 10.48 -51.34 -0.54 -8.84 16 3 C 0.44 12.35 7.07 71.23 0.50 12.86 16 4 O -0.54 -18.48 15.05 21.96 0.33 -18.15 16 5 C 0.14 3.54 2.70 43.42 0.12 3.66 16 6 H 0.14 3.10 7.66 -2.39 -0.02 3.09 16 7 N -0.65 -19.89 5.55 -499.35 -2.77 -22.66 16 8 C 0.07 2.45 5.38 86.30 0.46 2.91 16 9 C -0.09 -3.96 5.41 30.60 0.17 -3.80 16 10 C 0.03 1.45 4.97 29.85 0.15 1.60 16 11 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 13 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 14 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 15 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 C -0.09 -1.95 4.88 -19.87 -0.10 -2.04 16 20 C -0.11 -1.94 9.67 22.27 0.22 -1.73 16 21 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 22 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 23 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 24 C -0.11 -2.56 9.32 22.27 0.21 -2.36 16 25 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 27 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.35 11.07 7.09 -89.70 -0.64 10.43 16 29 H 0.02 0.73 7.62 -2.39 -0.02 0.71 16 30 H 0.08 2.76 8.06 -2.39 -0.02 2.74 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.14 2.04 8.04 -2.91 -0.02 2.02 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.11 2.68 7.25 -2.91 -0.02 2.66 16 Total: -1.00 -71.63 342.82 4.00 -67.63 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.38 Total: 16.62 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.29 Total: -24.12 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -2.49 Total: -80.55 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.21 Total: -26.99 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.63 4.00 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050509624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.594 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds