Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45212 * 1 3 3 C 1.34221 * 116.99741 * 2 1 4 4 O 1.20829 * 120.00519 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99769 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.46989 * 60.00165 * 5 3 2 7 7 N 1.46903 * 109.46852 * 180.02562 * 5 3 2 8 8 C 1.46898 * 110.99673 * 274.99686 * 7 5 3 9 9 C 1.53006 * 109.47006 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99685 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47011 * 90.00204 * 15 13 11 17 17 H 1.48498 * 109.47112 * 210.00472 * 15 13 11 18 18 H 1.48499 * 109.47134 * 330.00583 * 15 13 11 19 19 C 1.50697 * 109.46772 * 299.99853 * 5 3 2 20 20 C 1.38234 * 120.00117 * 279.72492 * 19 5 3 21 21 C 1.38244 * 119.99568 * 179.81545 * 20 19 5 22 22 C 1.38234 * 120.00170 * 0.39657 * 21 20 19 23 23 C 1.38231 * 119.99788 * 359.85631 * 22 21 20 24 24 C 1.38233 * 120.00438 * 359.95860 * 23 22 21 25 25 H 1.08994 * 109.46955 * 60.00225 * 1 2 3 26 26 H 1.08995 * 109.46780 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46680 * 299.99945 * 1 2 3 28 28 H 1.00897 * 110.99542 * 151.04827 * 7 5 3 29 29 H 1.09001 * 109.47392 * 60.00807 * 8 7 5 30 30 H 1.09001 * 109.47520 * 300.00529 * 8 7 5 31 31 H 1.09001 * 109.47002 * 299.99782 * 9 8 7 32 32 H 1.08993 * 109.46955 * 60.00219 * 9 8 7 33 33 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 34 34 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 35 35 H 0.96999 * 119.99910 * 179.97438 * 14 13 11 36 36 H 1.07995 * 120.00204 * 0.02562 * 20 19 5 37 37 H 1.08001 * 119.99285 * 180.23382 * 21 20 19 38 38 H 1.07995 * 119.99900 * 179.83990 * 22 21 20 39 39 H 1.08007 * 119.99744 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00449 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9829 2.6836 0.0002 8 6 4.0169 3.2231 -1.3657 9 6 4.4546 4.6887 -1.3244 10 6 4.4895 5.2508 -2.7470 11 6 4.9199 6.6944 -2.7062 12 1 5.1463 7.1639 -1.7603 13 6 5.0256 7.4156 -3.8766 14 7 4.7503 6.8438 -5.0285 15 14 5.5598 9.2049 -3.8262 16 1 7.0387 9.2832 -3.9359 17 1 4.9398 9.9387 -4.9585 18 1 5.1257 9.8151 -2.5438 19 6 4.1056 0.5915 1.2295 20 6 4.1111 1.2547 2.4424 21 6 4.6023 0.6263 3.5715 22 6 5.0955 -0.6622 3.4862 23 6 5.0948 -1.3235 2.2723 24 6 4.6001 -0.6966 1.1439 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 4.8760 2.7963 0.4558 29 1 3.0237 3.1526 -1.8092 30 1 4.7240 2.6499 -1.9653 31 1 3.7477 5.2622 -0.7248 32 1 5.4478 4.7588 -0.8812 33 1 5.1961 4.6774 -3.3470 34 1 3.4959 5.1806 -3.1899 35 1 4.8243 7.3512 -5.8518 36 1 3.7286 2.2625 2.5084 37 1 4.6030 1.1432 4.5198 38 1 5.4815 -1.1521 4.3678 39 1 5.4805 -2.3301 2.2055 40 1 4.6000 -1.2131 0.1955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050509627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = -86.910263 kcal Electronic energy + Delta-G solvation = -20878.908256 eV Core-core repulsion = 17657.521202 eV Total energy + Delta-G solvation = -3221.387053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74397 -40.08555 -38.09779 -37.14027 -35.64518 -33.86895 -31.90330 -31.60657 -29.37776 -28.29144 -26.57790 -24.42280 -23.40425 -23.12348 -22.00447 -21.35163 -18.93253 -18.51336 -17.92565 -17.69068 -17.16041 -16.62566 -16.49699 -16.20105 -15.94876 -15.29380 -14.99449 -14.71025 -14.40259 -14.26085 -14.08210 -13.86704 -13.65948 -13.47561 -13.15108 -12.97499 -12.70981 -12.50559 -12.38693 -12.04807 -11.91993 -11.80709 -11.64753 -11.55850 -11.40504 -11.14639 -10.55931 -9.81055 -9.73552 -9.60923 -8.20757 -6.31854 0.30568 0.51244 1.16941 1.39420 1.41496 1.52814 1.62498 2.40737 2.80646 3.12276 3.13998 3.49807 3.85203 3.89837 4.15272 4.16894 4.21989 4.28732 4.29387 4.33182 4.34337 4.63225 4.64771 4.66568 4.70771 4.89889 5.00549 5.03794 5.17855 5.21041 5.30998 5.47837 5.54653 5.57249 5.63416 5.72622 5.80975 5.84773 6.09398 6.24481 6.29450 6.76243 6.84548 7.37212 8.91399 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.003481 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.462317 B = 8041.605093 C = 8863.663474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.518 6.518 5 C 0.143 3.857 6 H 0.103 0.897 7 N -0.671 5.671 8 C 0.074 3.926 9 C -0.090 4.090 10 C 0.026 3.974 11 C -0.543 4.543 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.265 1.265 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.102 4.102 25 H 0.056 0.944 26 H 0.137 0.863 27 H 0.058 0.942 28 H 0.363 0.637 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.059 0.941 33 H -0.004 1.004 34 H -0.014 1.014 35 H 0.264 0.736 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 -20.990 16.568 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.305 3.695 4 O -0.405 6.405 5 C 0.032 3.968 6 H 0.120 0.880 7 N -0.306 5.306 8 C -0.054 4.054 9 C -0.128 4.128 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.108 4.108 20 C -0.130 4.130 21 C -0.146 4.146 22 C -0.130 4.130 23 C -0.140 4.140 24 C -0.120 4.120 25 H 0.075 0.925 26 H 0.155 0.845 27 H 0.077 0.923 28 H 0.186 0.814 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.015 0.985 34 H 0.004 0.996 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.194 -20.422 16.522 26.360 hybrid contribution 0.416 0.891 -0.920 1.347 sum -1.778 -19.531 15.601 25.060 Atomic orbital electron populations 1.23520 0.75040 1.05702 1.02158 1.86479 1.24692 1.32443 1.83930 1.24009 0.92261 0.81344 0.71837 1.90677 1.67255 1.37522 1.45084 1.19856 0.87246 0.90575 0.99121 0.87982 1.59907 1.36863 1.14517 1.19342 1.21913 0.99786 0.95716 0.88015 1.21333 1.00146 0.93655 0.97625 1.18956 0.94696 0.94982 0.92517 1.21690 1.45508 0.97722 0.93224 0.92207 1.26016 0.95372 1.03515 0.95064 1.70102 1.50199 1.38720 0.98419 0.85411 0.78664 0.78780 0.77979 1.19423 1.20714 1.18894 1.19409 1.02519 0.95863 0.92992 1.21174 0.99122 1.00218 0.92526 1.21416 0.98737 0.95919 0.98522 1.21585 0.98082 0.94540 0.98838 1.21463 0.99321 1.01093 0.92137 1.21260 0.97167 0.93192 1.00386 0.92549 0.84533 0.92340 0.81408 0.93192 0.94153 0.93471 0.92202 0.98530 0.99576 0.92742 0.86393 0.84271 0.83365 0.83173 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.36 -8.97 10.48 -51.33 -0.54 -9.51 16 3 C 0.46 14.08 7.12 71.24 0.51 14.58 16 4 O -0.52 -19.77 15.67 21.96 0.34 -19.43 16 5 C 0.14 3.77 2.73 43.42 0.12 3.88 16 6 H 0.10 2.39 7.66 -2.39 -0.02 2.37 16 7 N -0.67 -20.59 5.22 -499.34 -2.61 -23.20 16 8 C 0.07 2.74 5.38 86.31 0.46 3.20 16 9 C -0.09 -3.92 5.41 30.60 0.17 -3.76 16 10 C 0.03 1.44 4.97 29.85 0.15 1.59 16 11 C -0.54 -32.17 9.11 25.60 0.23 -31.93 16 12 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 13 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 14 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 15 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 19 C -0.11 -2.36 4.64 -19.87 -0.09 -2.45 16 20 C -0.11 -2.45 9.00 22.27 0.20 -2.25 16 21 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 22 C -0.11 -1.56 10.05 22.27 0.22 -1.34 16 23 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 24 C -0.10 -1.77 9.67 22.27 0.22 -1.55 16 25 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 26 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.36 9.87 7.98 -89.70 -0.72 9.15 16 29 H 0.05 2.05 7.62 -2.39 -0.02 2.03 16 30 H 0.04 1.38 8.06 -2.39 -0.02 1.36 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.12 2.90 7.71 -2.91 -0.02 2.88 16 37 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.14 1.95 8.04 -2.91 -0.02 1.93 16 Total: -1.00 -73.81 343.96 4.11 -69.71 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.30 Total: 14.40 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 4.29 Total: -21.40 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.32 Total: -81.26 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.19 Total: -28.94 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.81 4.11 -69.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050509627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.202 kcal (2) G-P(sol) polarization free energy of solvation -73.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds