Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35894 * 116.99795 * 2 1 4 4 C 1.38795 * 120.03061 * 359.97438 * 3 2 1 5 5 C 1.38156 * 120.05864 * 180.02562 * 4 3 2 6 6 C 1.38200 * 120.10269 * 0.29966 * 5 4 3 7 7 C 1.50704 * 119.96949 * 179.69879 * 6 5 4 8 8 H 1.08992 * 109.87668 * 220.70176 * 7 6 5 9 9 C 1.54329 * 109.88062 * 99.68505 * 7 6 5 10 10 C 1.55401 * 102.82932 * 218.48517 * 9 7 6 11 11 C 1.54912 * 101.66721 * 35.33394 * 10 9 7 12 12 N 1.47022 * 109.88295 * 341.71811 * 7 6 5 13 13 C 1.36934 * 125.65235 * 298.32274 * 12 7 6 14 14 H 1.07995 * 120.00625 * 156.41141 * 13 12 7 15 15 C 1.38818 * 119.99677 * 336.40980 * 13 12 7 16 16 N 1.31614 * 120.00193 * 156.29316 * 15 13 12 17 17 Si 1.86800 * 119.99802 * 336.29568 * 15 13 12 18 18 H 1.48498 * 109.47413 * 88.20057 * 17 15 13 19 19 H 1.48501 * 109.47389 * 208.20237 * 17 15 13 20 20 H 1.48504 * 109.47119 * 328.20204 * 17 15 13 21 21 C 1.38748 * 120.05905 * 359.44844 * 6 5 4 22 22 O 1.35896 * 120.03108 * 180.27689 * 21 6 5 23 23 C 1.42895 * 117.00190 * 180.25801 * 22 21 6 24 24 C 1.38617 * 120.02930 * 180.02562 * 3 2 1 25 25 H 1.08992 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46920 * 300.00274 * 1 2 3 27 27 H 1.09007 * 109.46886 * 60.00192 * 1 2 3 28 28 H 1.07999 * 119.97193 * 0.02562 * 4 3 2 29 29 H 1.07992 * 119.94608 * 180.02562 * 5 4 3 30 30 H 1.09005 * 110.72011 * 336.75237 * 9 7 6 31 31 H 1.08997 * 110.71904 * 100.03084 * 9 7 6 32 32 H 1.09000 * 110.88990 * 277.26830 * 10 9 7 33 33 H 1.08995 * 111.07748 * 153.48917 * 10 9 7 34 34 H 1.09002 * 110.36919 * 204.23872 * 11 10 9 35 35 H 1.09007 * 110.45609 * 81.96320 * 11 10 9 36 36 H 0.97001 * 120.00038 * 180.02562 * 16 15 13 37 37 H 1.09008 * 109.46987 * 299.99432 * 23 22 21 38 38 H 1.09001 * 109.47440 * 59.99385 * 23 22 21 39 39 H 1.09004 * 109.47279 * 179.97438 * 23 22 21 40 40 H 1.08008 * 120.04742 * 359.95572 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3753 -0.0005 5 6 1.9172 3.6066 -0.0011 6 6 3.2971 3.6821 -0.0073 7 6 3.9774 5.0268 -0.0148 8 1 4.8352 5.0045 -0.6868 9 6 4.4384 5.3896 1.4127 10 6 4.1541 6.9155 1.4898 11 6 2.8592 7.0357 0.6479 12 7 3.0299 6.0642 -0.4478 13 6 2.4091 6.1194 -1.6671 14 1 1.4793 6.6578 -1.7759 15 6 2.9751 5.4832 -2.7635 16 7 2.2188 5.1247 -3.7792 17 14 4.8102 5.1359 -2.7971 18 1 5.0769 3.8206 -2.1614 19 1 5.2836 5.1105 -4.2044 20 1 5.5293 6.2005 -2.0521 21 6 4.0567 2.5210 -0.0015 22 8 5.4136 2.5960 -0.0020 23 6 6.1316 1.3605 -0.0015 24 6 3.4302 1.2842 -0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.2121 2.3187 -0.0005 29 1 1.3277 4.5114 -0.0011 30 1 3.8515 4.8504 2.1563 31 1 5.5019 5.1864 1.5378 32 1 4.9669 7.4855 1.0398 33 1 3.9817 7.2306 2.5188 34 1 2.7591 8.0448 0.2480 35 1 1.9879 6.7789 1.2504 36 1 2.6142 4.6798 -4.5451 37 1 5.8703 0.7887 0.8889 38 1 5.8696 0.7876 -0.8911 39 1 7.2027 1.5628 -0.0025 40 1 4.0197 0.3791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053419905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -31.479028 kcal Electronic energy + Delta-G solvation = -22892.868654 eV Core-core repulsion = 19673.885279 eV Total energy + Delta-G solvation = -3218.983375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59707 -39.97591 -39.33983 -37.03438 -34.55169 -32.27128 -31.81681 -31.17955 -28.96885 -28.07941 -27.53408 -26.12016 -23.56277 -22.82865 -21.87605 -21.44310 -19.66953 -18.77038 -17.96660 -17.32319 -17.03484 -16.79213 -16.65206 -16.38467 -15.95145 -15.54501 -15.29174 -14.98763 -14.55958 -14.11800 -13.85343 -13.56607 -13.38229 -13.22811 -13.00867 -12.95133 -12.72859 -12.56020 -12.34755 -12.21616 -11.96511 -11.92152 -11.74779 -11.58940 -11.33682 -11.15943 -10.57382 -9.48195 -8.98839 -8.72104 -8.15842 -5.39564 0.50440 0.53406 1.36476 1.41788 1.45919 2.23324 2.46117 2.55682 2.82665 3.07911 3.44603 3.91042 3.93413 4.06653 4.12939 4.17089 4.24847 4.30628 4.36716 4.39562 4.41200 4.53287 4.55484 4.64653 4.68241 4.74862 4.83028 4.93461 5.01520 5.08194 5.18306 5.23565 5.30330 5.41381 5.48491 5.69863 5.72347 5.91527 6.15448 6.34542 6.54873 6.86304 7.63264 8.22545 9.03841 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.008268 C = 0.007855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.502333 B = 3385.913604 C = 3563.746301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.149 3.851 4 C -0.252 4.252 5 C -0.010 4.010 6 C -0.160 4.160 7 C 0.188 3.812 8 H 0.024 0.976 9 C -0.110 4.110 10 C -0.123 4.123 11 C 0.121 3.879 12 N -0.618 5.618 13 C -0.223 4.223 14 H 0.062 0.938 15 C -0.009 4.009 16 N -0.944 5.944 17 Si 0.917 3.083 18 H -0.257 1.257 19 H -0.322 1.322 20 H -0.280 1.280 21 C 0.154 3.846 22 O -0.327 6.327 23 C 0.016 3.984 24 C -0.256 4.256 25 H 0.127 0.873 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.257 0.743 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.121 0.879 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -8.584 13.240 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.243 6.243 3 C 0.103 3.897 4 C -0.271 4.271 5 C -0.029 4.029 6 C -0.163 4.163 7 C 0.082 3.918 8 H 0.041 0.959 9 C -0.148 4.148 10 C -0.161 4.161 11 C -0.003 4.003 12 N -0.343 5.343 13 C -0.352 4.352 14 H 0.079 0.921 15 C -0.205 4.205 16 N -0.590 5.590 17 Si 0.749 3.251 18 H -0.182 1.182 19 H -0.252 1.252 20 H -0.206 1.206 21 C 0.107 3.893 22 O -0.241 6.241 23 C -0.078 4.078 24 C -0.276 4.276 25 H 0.145 0.855 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.139 0.861 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.930 -8.648 13.033 15.913 hybrid contribution 0.455 -0.193 -1.049 1.160 sum 3.386 -8.841 11.983 15.272 Atomic orbital electron populations 1.23328 0.76518 1.05576 1.02001 1.85970 1.23420 1.26280 1.88672 1.18678 0.91676 0.84438 0.94891 1.21289 1.00693 0.91883 1.13185 1.20662 0.93325 0.97263 0.91622 1.19849 0.93812 0.94248 1.08368 1.20001 0.90746 0.85535 0.95527 0.95918 1.22557 1.01392 0.96885 0.93963 1.22800 0.97191 0.95107 1.00979 1.21913 0.96732 0.92580 0.89036 1.44946 1.52306 1.24612 1.12410 1.18387 1.01676 1.30737 0.84382 0.92064 1.25383 0.99758 0.99777 0.95539 1.69958 1.35560 1.43587 1.09938 0.86292 0.85393 0.79805 0.73636 1.18246 1.25187 1.20626 1.18578 0.82789 0.92811 0.95085 1.86106 1.15052 1.34507 1.88418 1.23344 0.97481 0.84868 1.02088 1.20390 0.92971 0.97266 1.16940 0.85453 0.91561 0.92969 0.84202 0.85829 0.90399 0.90208 0.91806 0.87731 0.93546 0.94274 0.93434 0.90791 0.93000 0.86095 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -10.17 10.50 -92.36 -0.97 -11.14 16 3 C 0.15 5.38 6.68 22.49 0.15 5.53 16 4 C -0.25 -9.58 9.04 22.38 0.20 -9.38 16 5 C -0.01 -0.45 8.78 22.24 0.20 -0.25 16 6 C -0.16 -7.02 3.96 -19.75 -0.08 -7.10 16 7 C 0.19 8.31 1.77 44.60 0.08 8.38 16 8 H 0.02 1.16 3.10 -2.39 -0.01 1.15 16 9 C -0.11 -3.74 6.49 31.87 0.21 -3.53 16 10 C -0.12 -3.75 7.09 32.07 0.23 -3.52 16 11 C 0.12 4.62 7.24 86.86 0.63 5.24 16 12 N -0.62 -29.53 1.95 -672.36 -1.31 -30.85 16 13 C -0.22 -12.73 8.89 84.04 0.75 -11.98 16 14 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 15 C -0.01 -0.51 5.27 84.86 0.45 -0.07 16 16 N -0.94 -60.36 13.97 21.65 0.30 -60.06 16 17 Si 0.92 49.49 24.14 68.60 1.66 51.15 16 18 H -0.26 -13.45 5.34 99.48 0.53 -12.91 16 19 H -0.32 -17.80 7.11 99.48 0.71 -17.09 16 20 H -0.28 -14.85 6.99 99.48 0.70 -14.16 16 21 C 0.15 6.15 6.08 22.49 0.14 6.29 16 22 O -0.33 -11.97 8.99 -92.38 -0.83 -12.80 16 23 C 0.02 0.41 9.81 113.37 1.11 1.52 16 24 C -0.26 -9.29 8.97 22.46 0.20 -9.09 16 25 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 27 H 0.05 1.21 7.66 -2.38 -0.02 1.19 16 28 H 0.14 4.59 6.29 -2.91 -0.02 4.57 16 29 H 0.12 5.77 6.54 -2.91 -0.02 5.75 16 30 H 0.08 2.46 7.84 -2.38 -0.02 2.44 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.26 15.92 8.31 -92.71 -0.77 15.14 16 37 H 0.07 1.51 7.66 -2.38 -0.02 1.49 16 38 H 0.05 1.28 7.66 -2.39 -0.02 1.26 16 39 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.15 4.53 6.30 -2.91 -0.02 4.51 16 Total: -1.00 -72.70 312.94 5.06 -67.64 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.85 Total: 12.45 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.37 Total: -16.40 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -1.01 Total: -90.90 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.80 Total: -23.94 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.66 Total: 51.15 kcal Total: -72.70 5.06 -67.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053419905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.157 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds