Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99679 * 90.00212 * 11 10 9 13 13 C 1.34774 * 120.00273 * 270.00246 * 11 10 9 14 14 O 1.21286 * 119.99764 * 359.97438 * 13 11 10 15 15 C 1.50697 * 120.00258 * 179.97438 * 13 11 10 16 16 C 1.50695 * 109.47064 * 179.97438 * 15 13 11 17 17 H 1.08002 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.37886 * 120.00003 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99679 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99999 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47147 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47242 * 120.00500 * 20 18 16 23 23 H 1.48500 * 109.47030 * 240.00036 * 20 18 16 24 24 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 26 26 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 27 27 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 29 29 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 32 32 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 1.08996 * 109.47220 * 90.00398 * 12 11 10 36 36 H 1.09001 * 109.46688 * 210.00173 * 12 11 10 37 37 H 1.08998 * 109.47230 * 329.99640 * 12 11 10 38 38 H 1.09002 * 109.46816 * 299.99717 * 15 13 11 39 39 H 1.08991 * 109.47311 * 59.99425 * 15 13 11 40 40 H 0.96993 * 119.99874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 6 4.5634 -3.0084 -1.3194 13 6 6.5633 -1.6345 -1.5431 14 8 7.1082 -0.5553 -1.6401 15 6 7.3865 -2.8968 -1.5423 16 6 8.8459 -2.5449 -1.6734 17 1 9.1473 -1.5105 -1.7493 18 6 9.7966 -3.5433 -1.6954 19 7 9.4296 -4.8028 -1.6025 20 14 11.6056 -3.1070 -1.8573 21 1 11.7532 -1.6320 -1.9449 22 1 12.3440 -3.6093 -0.6708 23 1 12.1578 -3.7331 -3.0854 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 0.2128 2.3203 0.0097 28 1 1.3339 4.5113 -0.0024 29 1 3.7922 4.6381 -0.0116 30 1 5.1344 2.5752 -0.0097 31 1 5.2341 0.2273 0.4302 32 1 3.7489 -0.7402 0.5934 33 1 3.4412 -0.6828 -1.8664 34 1 4.9262 0.2847 -2.0297 35 1 4.3213 -3.3834 -2.3138 36 1 5.2318 -3.7094 -0.8195 37 1 3.6475 -2.9023 -0.7381 38 1 7.2247 -3.4354 -0.6085 39 1 7.0880 -3.5258 -2.3809 40 1 10.0983 -5.5052 -1.6177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057535677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -55.536311 kcal Electronic energy + Delta-G solvation = -21110.134886 eV Core-core repulsion = 17890.108309 eV Total energy + Delta-G solvation = -3220.026577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38264 -38.84677 -37.51447 -35.18818 -33.17262 -32.78032 -30.25245 -29.56104 -28.16589 -27.35588 -25.99001 -24.27345 -22.55839 -22.21642 -21.04038 -18.34806 -18.09825 -16.53446 -16.35444 -16.00001 -15.84949 -15.59087 -15.14225 -14.72767 -14.47578 -14.28883 -13.96702 -13.12321 -13.06497 -12.95762 -12.50163 -12.41166 -12.13869 -12.03527 -11.90809 -11.74265 -11.60996 -11.28666 -11.12074 -10.85694 -10.71782 -10.59874 -10.51722 -9.90270 -9.15907 -8.98316 -8.54310 -8.39616 -8.31432 -7.90981 -6.01611 -4.00489 1.22978 1.34731 3.13716 3.36251 3.43089 3.51578 3.61530 3.78131 3.81448 4.52129 4.63980 4.70485 4.89303 4.91616 4.99207 5.22069 5.23153 5.29873 5.36486 5.38181 5.55202 5.59441 5.63943 5.77115 5.90818 5.96125 6.00503 6.17572 6.21523 6.30526 6.39842 6.44515 6.57065 6.73441 7.14122 7.26265 7.30262 7.39444 8.00826 8.05003 8.44334 9.10687 9.28715 9.64374 11.10938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028839 B = 0.003619 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.679000 B = 7735.746866 C = 8567.179959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.127 3.873 4 C -0.210 4.210 5 C -0.090 4.090 6 C -0.155 4.155 7 C -0.075 4.075 8 C -0.103 4.103 9 C -0.087 4.087 10 C 0.127 3.873 11 N -0.634 5.634 12 C 0.085 3.915 13 C 0.514 3.486 14 O -0.545 6.545 15 C 0.007 3.993 16 C -0.506 4.506 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 10.660 3.877 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.082 3.918 4 C -0.229 4.229 5 C -0.108 4.108 6 C -0.173 4.173 7 C -0.093 4.093 8 C -0.104 4.104 9 C -0.126 4.126 10 C 0.003 3.997 11 N -0.370 5.370 12 C -0.058 4.058 13 C 0.306 3.694 14 O -0.421 6.421 15 C -0.032 4.032 16 C -0.545 4.545 17 H 0.093 0.907 18 C -0.147 4.147 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.084 10.852 3.812 23.144 hybrid contribution 0.470 0.192 -0.038 0.509 sum -19.614 11.044 3.774 22.823 Atomic orbital electron populations 1.23036 0.78755 1.03870 1.01084 1.86110 1.20953 1.26768 1.88611 1.18871 0.91778 0.84189 0.97008 1.21173 0.99749 0.92438 1.09515 1.20889 0.94696 0.96802 0.98400 1.21066 0.93863 0.98445 1.03971 1.21059 1.00448 0.90967 0.96871 1.19281 0.90342 0.96099 1.04681 1.20830 0.99268 0.93699 0.98792 1.21196 0.95103 0.87929 0.95424 1.48172 1.07046 1.06122 1.75618 1.21676 0.97894 0.85185 1.01053 1.22040 0.80606 0.93563 0.73189 1.90517 1.70913 1.31510 1.49126 1.19254 0.94913 0.89833 0.99229 1.21248 0.89748 0.94263 1.49194 0.90674 1.25008 0.99458 0.94867 0.95329 1.69968 1.33855 0.99059 1.51272 0.86396 0.84564 0.78816 0.77485 1.19482 1.21039 1.21052 0.88274 0.92892 0.92800 0.85731 0.86099 0.85947 0.84969 0.90486 0.90743 0.91454 0.90477 0.93377 0.90337 0.92101 0.93485 0.93543 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.59 9.64 -19.42 -0.19 -3.78 16 3 C 0.13 1.56 6.66 -39.22 -0.26 1.30 16 4 C -0.21 -2.17 9.04 -39.43 -0.36 -2.53 16 5 C -0.09 -0.89 10.04 -39.60 -0.40 -1.28 16 6 C -0.16 -1.68 10.04 -39.56 -0.40 -2.07 16 7 C -0.08 -0.96 9.68 -39.61 -0.38 -1.34 16 8 C -0.10 -1.40 5.15 -104.47 -0.54 -1.94 16 9 C -0.09 -1.32 5.39 -27.88 -0.15 -1.47 16 10 C 0.13 2.08 5.39 -4.04 -0.02 2.06 16 11 N -0.63 -11.88 2.87 -181.57 -0.52 -12.40 16 12 C 0.09 1.30 10.24 59.85 0.61 1.91 16 13 C 0.51 12.22 7.67 -10.99 -0.08 12.14 16 14 O -0.54 -14.53 15.04 5.55 0.08 -14.44 16 15 C 0.01 0.18 4.01 -29.04 -0.12 0.06 16 16 C -0.51 -14.97 8.92 -34.44 -0.31 -15.28 16 17 H 0.08 2.32 6.75 -52.49 -0.35 1.97 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 20 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.32 7.65 -51.93 -0.40 -0.07 16 26 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 27 H 0.12 0.98 6.30 -52.49 -0.33 0.65 16 28 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 30 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 31 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 32 H 0.07 1.10 7.70 -51.93 -0.40 0.70 16 33 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.08 1.40 7.42 -51.93 -0.39 1.01 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.26 6.44 -51.93 -0.33 0.93 16 37 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.05 1.24 7.40 -51.93 -0.38 0.85 16 39 H 0.05 1.23 8.11 -51.93 -0.42 0.81 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -33.85 337.60 -7.24 -41.09 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.91 Total: -1.19 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.51 Total: -5.79 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.21 Total: -38.37 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.10 Total: -18.22 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.85 -7.24 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057535677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.448 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds