Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99679 * 90.00212 * 11 10 9 13 13 C 1.34774 * 120.00273 * 270.00246 * 11 10 9 14 14 O 1.21286 * 119.99764 * 359.97438 * 13 11 10 15 15 C 1.50697 * 120.00258 * 179.97438 * 13 11 10 16 16 C 1.50695 * 109.47064 * 179.97438 * 15 13 11 17 17 H 1.08002 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.37886 * 120.00003 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99679 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99999 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47147 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47242 * 120.00500 * 20 18 16 23 23 H 1.48500 * 109.47030 * 240.00036 * 20 18 16 24 24 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 26 26 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 27 27 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 29 29 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 32 32 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 1.08996 * 109.47220 * 90.00398 * 12 11 10 36 36 H 1.09001 * 109.46688 * 210.00173 * 12 11 10 37 37 H 1.08998 * 109.47230 * 329.99640 * 12 11 10 38 38 H 1.09002 * 109.46816 * 299.99717 * 15 13 11 39 39 H 1.08991 * 109.47311 * 59.99425 * 15 13 11 40 40 H 0.96993 * 119.99874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 6 4.5634 -3.0084 -1.3194 13 6 6.5633 -1.6345 -1.5431 14 8 7.1082 -0.5553 -1.6401 15 6 7.3865 -2.8968 -1.5423 16 6 8.8459 -2.5449 -1.6734 17 1 9.1473 -1.5105 -1.7493 18 6 9.7966 -3.5433 -1.6954 19 7 9.4296 -4.8028 -1.6025 20 14 11.6056 -3.1070 -1.8573 21 1 11.7532 -1.6320 -1.9449 22 1 12.3440 -3.6093 -0.6708 23 1 12.1578 -3.7331 -3.0854 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 0.2128 2.3203 0.0097 28 1 1.3339 4.5113 -0.0024 29 1 3.7922 4.6381 -0.0116 30 1 5.1344 2.5752 -0.0097 31 1 5.2341 0.2273 0.4302 32 1 3.7489 -0.7402 0.5934 33 1 3.4412 -0.6828 -1.8664 34 1 4.9262 0.2847 -2.0297 35 1 4.3213 -3.3834 -2.3138 36 1 5.2318 -3.7094 -0.8195 37 1 3.6475 -2.9023 -0.7381 38 1 7.2247 -3.4354 -0.6085 39 1 7.0880 -3.5258 -2.3809 40 1 10.0983 -5.5052 -1.6177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057535677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -76.052463 kcal Electronic energy + Delta-G solvation = -21111.024533 eV Core-core repulsion = 17890.108309 eV Total energy + Delta-G solvation = -3220.916224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27472 -40.55496 -38.34277 -36.77910 -35.15372 -34.20522 -31.34433 -31.01234 -29.59832 -28.05709 -27.40473 -26.04778 -24.15101 -23.03688 -22.08862 -20.05505 -18.89042 -18.61008 -17.61177 -17.24431 -17.07710 -16.73063 -16.57627 -16.18951 -16.09953 -15.31841 -14.91210 -14.55327 -14.34931 -14.24749 -14.01001 -13.78138 -13.70243 -13.26488 -13.10886 -12.94784 -12.82083 -12.75590 -12.56027 -12.48727 -12.04466 -11.99133 -11.80765 -11.69617 -11.37011 -10.62462 -10.47220 -9.93788 -9.53939 -9.04379 -8.25233 -6.32450 0.34892 0.49323 1.39226 1.39568 1.54980 1.86678 2.20297 2.42347 2.45079 2.81166 3.09560 3.80263 3.81637 3.99013 4.14893 4.28699 4.31316 4.33002 4.40717 4.44913 4.46485 4.53477 4.55022 4.71450 4.76030 4.79491 4.88129 4.93807 5.00482 5.07214 5.18322 5.27865 5.38588 5.52293 5.62607 5.66360 5.78753 5.88099 6.04855 6.49448 6.54979 6.81069 7.33559 7.46797 8.87215 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028839 B = 0.003619 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.679000 B = 7735.746866 C = 8567.179959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.121 3.879 4 C -0.208 4.208 5 C -0.084 4.084 6 C -0.160 4.160 7 C -0.094 4.094 8 C -0.129 4.129 9 C -0.073 4.073 10 C 0.131 3.869 11 N -0.624 5.624 12 C 0.080 3.920 13 C 0.513 3.487 14 O -0.584 6.584 15 C 0.014 3.986 16 C -0.538 4.538 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.964 3.036 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.118 0.882 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.663 11.218 3.973 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.076 3.924 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.179 4.179 7 C -0.112 4.112 8 C -0.131 4.131 9 C -0.112 4.112 10 C 0.009 3.991 11 N -0.357 5.357 12 C -0.062 4.062 13 C 0.304 3.696 14 O -0.464 6.464 15 C -0.025 4.025 16 C -0.576 4.576 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.789 3.211 21 H -0.201 1.201 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.133 0.867 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.136 0.864 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.257 11.381 3.916 25.303 hybrid contribution 0.977 0.008 -0.056 0.979 sum -21.280 11.389 3.860 24.443 Atomic orbital electron populations 1.23337 0.76551 1.05455 1.02238 1.86072 1.23270 1.26583 1.88516 1.18939 0.91301 0.85322 0.96874 1.21527 1.01163 0.91767 1.08227 1.21312 0.94390 0.98036 0.96411 1.21323 0.94636 0.98405 1.03494 1.21101 1.00188 0.91883 0.98058 1.19183 0.91258 0.95306 1.07329 1.20589 0.98164 0.95009 0.97428 1.21308 0.95229 0.86230 0.96359 1.48110 1.05641 1.08502 1.73482 1.21919 0.98603 0.83060 1.02608 1.21600 0.82349 0.92072 0.73595 1.90489 1.72268 1.32266 1.51359 1.19050 0.94118 0.90832 0.98480 1.21426 0.91987 0.93535 1.50675 0.92884 1.25791 1.03812 0.94705 0.94496 1.70034 1.35520 0.99756 1.51027 0.85407 0.79186 0.78191 0.78320 1.20079 1.19610 1.19617 0.86652 0.91662 0.91606 0.82872 0.82829 0.84084 0.86361 0.93458 0.90338 0.88767 0.92701 0.91700 0.91462 0.88633 0.94079 0.94209 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.92 9.64 -92.42 -0.89 -7.81 16 3 C 0.12 2.78 6.66 22.51 0.15 2.93 16 4 C -0.21 -3.68 9.04 22.36 0.20 -3.48 16 5 C -0.08 -1.40 10.04 22.26 0.22 -1.18 16 6 C -0.16 -3.26 10.04 22.28 0.22 -3.03 16 7 C -0.09 -2.46 9.68 22.25 0.22 -2.24 16 8 C -0.13 -3.55 5.15 -19.77 -0.10 -3.65 16 9 C -0.07 -2.29 5.39 29.85 0.16 -2.13 16 10 C 0.13 4.35 5.39 86.38 0.47 4.82 16 11 N -0.62 -23.64 2.87 -846.76 -2.43 -26.07 16 12 C 0.08 2.35 10.24 127.77 1.31 3.66 16 13 C 0.51 25.35 7.67 87.66 0.67 26.02 16 14 O -0.58 -32.81 15.04 -3.05 -0.05 -32.86 16 15 C 0.01 0.78 4.01 29.10 0.12 0.90 16 16 C -0.54 -32.90 8.92 25.60 0.23 -32.67 16 17 H 0.05 3.42 6.75 -2.91 -0.02 3.40 16 18 C 0.01 0.62 5.46 84.66 0.46 1.08 16 19 N -0.92 -54.95 13.29 21.45 0.28 -54.67 16 20 Si 0.96 46.35 29.54 68.60 2.03 48.38 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.58 7.65 -2.39 -0.02 0.56 16 26 H 0.07 0.59 7.67 -2.38 -0.02 0.57 16 27 H 0.15 1.76 6.30 -2.91 -0.02 1.74 16 28 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 29 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 32 H 0.08 2.32 7.70 -2.39 -0.02 2.30 16 33 H 0.09 2.63 8.07 -2.39 -0.02 2.61 16 34 H 0.05 2.07 7.42 -2.39 -0.02 2.06 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 2.15 6.44 -2.39 -0.02 2.14 16 37 H 0.10 2.17 8.07 -2.39 -0.02 2.15 16 38 H 0.04 2.24 7.40 -2.39 -0.02 2.22 16 39 H 0.04 2.17 8.11 -2.39 -0.02 2.15 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -74.90 337.60 5.40 -69.50 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.02 Total: 11.18 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.44 Total: -7.65 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -2.15 Total: -80.74 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.94 Total: -40.67 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.90 5.40 -69.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057535677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.557 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds