Wall clock time and date at job start Mon Mar 30 2020 01:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47121 * 2 1 4 4 C 1.42907 * 113.99671 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46712 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46903 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46866 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00122 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.39230 * 120.00132 * 184.29391 * 9 7 6 11 11 C 1.39488 * 119.83491 * 324.71459 * 10 9 7 12 12 C 1.36369 * 120.16815 * 180.29701 * 11 10 9 13 13 C 1.40868 * 119.83187 * 359.48081 * 12 11 10 14 14 C 1.41157 * 120.16787 * 180.25497 * 13 12 11 15 15 H 1.07997 * 120.00057 * 215.01831 * 14 13 12 16 16 C 1.39907 * 119.99736 * 35.00954 * 14 13 12 17 17 N 1.30868 * 120.00224 * 355.54662 * 16 14 13 18 18 Si 1.86804 * 119.99669 * 175.55178 * 16 14 13 19 19 H 1.48497 * 109.47411 * 89.99814 * 18 16 14 20 20 H 1.48499 * 109.46679 * 210.00225 * 18 16 14 21 21 H 1.48503 * 109.46788 * 329.99782 * 18 16 14 22 22 C 1.40869 * 119.66984 * 0.51410 * 13 12 11 23 23 C 1.36371 * 119.83090 * 359.73785 * 22 13 12 24 24 H 1.09002 * 109.46614 * 60.00052 * 1 2 3 25 25 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46809 * 299.99940 * 1 2 3 27 27 H 1.08999 * 109.47053 * 239.99688 * 2 1 3 28 28 H 1.09007 * 109.46860 * 120.00325 * 2 1 3 29 29 H 1.08991 * 109.47517 * 60.00332 * 4 3 2 30 30 H 1.09005 * 109.47220 * 299.99511 * 4 3 2 31 31 H 1.09006 * 109.47334 * 60.00105 * 5 4 3 32 32 H 1.08996 * 109.47461 * 299.99751 * 5 4 3 33 33 H 1.09006 * 109.46747 * 60.00104 * 6 5 4 34 34 H 1.08996 * 109.47151 * 300.00299 * 6 5 4 35 35 H 0.97004 * 120.00223 * 4.29910 * 9 7 6 36 36 H 1.07997 * 119.90929 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.08447 * 179.70013 * 12 11 10 38 38 H 0.96996 * 120.00226 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.08685 * 179.71143 * 22 13 12 40 40 H 1.07996 * 119.92011 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 6 5.3507 3.0591 0.0012 7 6 5.7393 4.5151 -0.0002 8 8 4.8809 5.3718 -0.0015 9 7 7.0408 4.8652 0.0012 10 6 7.4006 6.2073 0.0902 11 6 6.6133 7.1793 -0.5271 12 6 6.9627 8.4951 -0.4493 13 6 8.1160 8.8729 0.2659 14 6 8.4813 10.2334 0.3555 15 1 9.5244 10.5130 0.3646 16 6 7.4920 11.2197 0.4324 17 7 6.2296 10.8893 0.3336 18 14 7.9732 13.0082 0.6760 19 1 8.1643 13.6541 -0.6475 20 1 6.8986 13.7128 1.4202 21 1 9.2392 13.0792 1.4489 22 6 8.9060 7.8855 0.8868 23 6 8.5468 6.5731 0.7960 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8341 0.9764 -0.8891 30 1 3.8334 0.9766 0.8909 31 1 3.4223 3.4224 0.8894 32 1 3.4232 3.4213 -0.8905 33 1 5.7542 2.5749 -0.8882 34 1 5.7527 2.5761 0.8918 35 1 7.7269 4.1822 -0.0600 36 1 5.7272 6.8885 -1.0717 37 1 6.3548 9.2462 -0.9319 38 1 5.5437 11.5730 0.3872 39 1 9.7942 8.1671 1.4330 40 1 9.1517 5.8150 1.2710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060614720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:22 Heat of formation + Delta-G solvation = -98.416719 kcal Electronic energy + Delta-G solvation = -20236.973656 eV Core-core repulsion = 17015.087645 eV Total energy + Delta-G solvation = -3221.886011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.21820 -39.26057 -38.87621 -36.19997 -34.86783 -34.61167 -31.99770 -31.41844 -30.83100 -28.14759 -26.37889 -23.66374 -23.53852 -23.05245 -22.15463 -20.96934 -19.22967 -18.54250 -17.78383 -17.42441 -17.38511 -16.96326 -16.43364 -15.77259 -15.48168 -15.27359 -14.89023 -14.72303 -14.39353 -13.94833 -13.80601 -13.53843 -13.48889 -13.31470 -12.86257 -12.78351 -12.62876 -12.48230 -12.39778 -12.30782 -11.86764 -11.78727 -11.73148 -11.69250 -11.19424 -10.73954 -10.51102 -10.44503 -9.45406 -8.73715 -8.49673 -6.32931 0.81965 1.12926 1.38097 1.44670 1.53502 1.83930 2.22914 2.29917 2.80997 2.88032 3.67893 3.78804 4.00868 4.11031 4.18956 4.33599 4.43565 4.45602 4.50160 4.50771 4.55232 4.55332 4.70135 4.88330 5.01347 5.02788 5.12512 5.14533 5.19157 5.24550 5.30475 5.35353 5.44734 5.71460 5.88179 6.09188 6.15467 6.34159 6.36054 6.70946 6.76748 6.96009 7.02884 7.47289 8.43386 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033622 B = 0.002756 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.588324 B =10158.355951 C =10856.681920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.423 6.423 4 C 0.068 3.932 5 C -0.103 4.103 6 C -0.116 4.116 7 C 0.491 3.509 8 O -0.583 6.583 9 N -0.645 5.645 10 C 0.021 3.979 11 C -0.111 4.111 12 C -0.170 4.170 13 C 0.063 3.937 14 C -0.496 4.496 15 H 0.080 0.920 16 C 0.020 3.980 17 N -0.849 5.849 18 Si 0.992 3.008 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.209 4.209 23 C -0.108 4.108 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.421 0.579 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.281 0.719 39 H 0.113 0.887 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -21.153 -0.273 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.344 6.344 4 C -0.009 4.009 5 C -0.142 4.142 6 C -0.156 4.156 7 C 0.280 3.720 8 O -0.462 6.462 9 N -0.291 5.291 10 C -0.073 4.073 11 C -0.131 4.131 12 C -0.190 4.190 13 C 0.061 3.939 14 C -0.527 4.527 15 H 0.098 0.902 16 C -0.191 4.191 17 N -0.477 5.477 18 Si 0.813 3.187 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.229 4.229 23 C -0.128 4.128 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.259 0.741 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.236 -20.352 -0.262 20.609 hybrid contribution 0.157 0.812 0.019 0.827 sum -3.079 -19.539 -0.244 19.782 Atomic orbital electron populations 1.21794 0.93528 1.03362 1.02369 1.22665 0.96019 0.82729 1.01197 1.87883 1.22416 1.28377 1.95684 1.22518 0.80680 0.95664 1.01995 1.21162 0.94505 0.95959 1.02533 1.21512 0.96389 0.90017 1.07671 1.21683 0.81915 0.93110 0.75278 1.90723 1.50862 1.54070 1.50579 1.42949 1.08026 1.05986 1.72110 1.17391 0.99306 0.83905 1.06702 1.20675 0.98882 0.93391 1.00195 1.21175 1.00726 0.94393 1.02723 1.18081 0.92108 0.94117 0.89636 1.19762 0.94581 0.91533 1.46832 0.90166 1.26885 0.94228 1.05955 0.92059 1.69918 1.01823 1.36926 1.39032 0.85056 0.79022 0.75355 0.79309 1.18669 1.19823 1.17812 1.20973 1.03245 0.93025 1.05650 1.20471 0.96984 0.96262 0.99105 0.92711 0.88847 0.92751 0.92118 0.92163 0.91141 0.91228 0.93085 0.92899 0.85204 0.85325 0.74061 0.88713 0.87956 0.90809 0.86877 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.42 -9.52 10.34 -148.98 -1.54 -11.06 16 4 C 0.07 1.17 5.94 71.98 0.43 1.60 16 5 C -0.10 -2.45 4.87 30.60 0.15 -2.30 16 6 C -0.12 -2.22 5.70 29.85 0.17 -2.05 16 7 C 0.49 16.17 7.66 87.66 0.67 16.85 16 8 O -0.58 -26.57 13.40 -3.01 -0.04 -26.61 16 9 N -0.64 -20.54 5.30 -303.11 -1.61 -22.15 16 10 C 0.02 0.90 6.31 38.57 0.24 1.14 16 11 C -0.11 -5.84 8.61 22.14 0.19 -5.65 16 12 C -0.17 -9.80 8.61 22.48 0.19 -9.61 16 13 C 0.06 3.53 5.55 -21.28 -0.12 3.41 16 14 C -0.50 -27.67 9.02 23.39 0.21 -27.46 16 15 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 16 C 0.02 1.06 5.42 85.24 0.46 1.52 16 17 N -0.85 -48.46 10.61 21.82 0.23 -48.23 16 18 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 22 C -0.21 -10.07 9.74 22.48 0.22 -9.85 16 23 C -0.11 -4.50 9.90 22.14 0.22 -4.28 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.05 1.48 8.10 -2.38 -0.02 1.46 16 32 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 33 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.42 8.96 8.82 -92.71 -0.82 8.14 16 36 H 0.09 5.12 6.22 -2.91 -0.02 5.10 16 37 H 0.10 6.34 6.15 -2.91 -0.02 6.32 16 38 H 0.28 14.76 8.30 -92.71 -0.77 13.99 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -75.97 337.74 3.54 -72.43 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.21 Total: 29.86 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 4.26 Total: -36.79 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.38 Total: -70.38 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.58 Total: -37.67 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -75.97 3.54 -72.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060614720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.986 kcal (2) G-P(sol) polarization free energy of solvation -75.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds