Wall clock time and date at job start Mon Mar 30 2020 01:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99736 * 359.97438 * 13 11 10 15 15 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 16 16 C 1.50702 * 109.46836 * 89.99960 * 15 13 11 17 17 H 1.07994 * 120.00445 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99368 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99702 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00160 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46983 * 89.99885 * 20 18 16 22 22 H 1.48502 * 109.46686 * 209.99557 * 20 18 16 23 23 H 1.48496 * 109.47191 * 329.99556 * 20 18 16 24 24 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 25 25 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 26 26 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 29 29 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 32 32 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 1.08996 * 109.46784 * 90.00263 * 14 13 11 36 36 H 1.09003 * 109.47146 * 209.99886 * 14 13 11 37 37 H 1.08994 * 109.47096 * 330.00470 * 14 13 11 38 38 H 1.08998 * 109.46420 * 209.99986 * 15 13 11 39 39 H 1.08995 * 109.46904 * 329.99992 * 15 13 11 40 40 H 0.97004 * 119.99964 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 6 5.2446 -1.7399 -1.4360 12 8 5.6562 -2.1954 -0.3900 13 7 5.5234 -2.3629 -2.5982 14 6 5.0258 -1.8131 -3.8617 15 6 6.3232 -3.5904 -2.5979 16 6 5.4118 -4.7836 -2.4682 17 1 4.3438 -4.6419 -2.3939 18 6 5.9416 -6.0563 -2.4454 19 7 5.1464 -7.0976 -2.3317 20 14 7.7890 -6.3015 -2.5746 21 1 8.3852 -6.2971 -1.2146 22 1 8.0707 -7.6018 -3.2344 23 1 8.3795 -5.2008 -3.3776 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.2128 2.3203 0.0097 28 1 1.3339 4.5113 -0.0024 29 1 3.7922 4.6381 -0.0116 30 1 5.1344 2.5752 -0.0097 31 1 5.2341 0.2273 0.4302 32 1 3.7489 -0.7402 0.5934 33 1 3.4412 -0.6828 -1.8664 34 1 4.9262 0.2847 -2.0297 35 1 5.7595 -1.1176 -4.2692 36 1 4.8611 -2.6242 -4.5710 37 1 4.0869 -1.2886 -3.6850 38 1 6.8823 -3.6599 -3.5309 39 1 7.0181 -3.5710 -1.7584 40 1 5.5191 -7.9931 -2.3161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060617780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:19 Heat of formation + Delta-G solvation = -50.918244 kcal Electronic energy + Delta-G solvation = -21186.693593 eV Core-core repulsion = 17966.867270 eV Total energy + Delta-G solvation = -3219.826322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36680 -38.94651 -37.48554 -34.92165 -33.87329 -32.46965 -30.34146 -29.90466 -28.26339 -27.34736 -25.89871 -24.51039 -22.22703 -22.10804 -20.90318 -18.28950 -18.06644 -16.91395 -16.47782 -16.34542 -15.81286 -15.44729 -15.23239 -15.00735 -14.53296 -14.09272 -13.80803 -13.29055 -13.08846 -12.99173 -12.58306 -12.30367 -12.11152 -12.01940 -11.93496 -11.76710 -11.61349 -11.33484 -11.22425 -10.91573 -10.76114 -10.62777 -10.46988 -10.09829 -9.49386 -9.05213 -8.82934 -8.54681 -8.19962 -7.62038 -6.04483 -4.02723 1.20563 1.33945 3.22259 3.32437 3.38394 3.40226 3.46739 3.62683 3.98996 4.43552 4.63579 4.70742 4.91089 4.95315 5.02587 5.15357 5.22416 5.28541 5.36291 5.39544 5.44080 5.53323 5.54921 5.65810 5.87662 5.89319 5.94219 6.04772 6.22591 6.24685 6.37806 6.43381 6.56991 6.71451 6.76302 7.00691 7.32743 7.42016 7.66287 8.33926 8.52476 8.98590 9.08491 9.56195 11.09063 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027617 B = 0.003828 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.635236 B = 7312.954923 C = 7792.957861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.130 3.870 4 C -0.209 4.209 5 C -0.089 4.089 6 C -0.158 4.158 7 C -0.080 4.080 8 C -0.107 4.107 9 C -0.057 4.057 10 C -0.128 4.128 11 C 0.507 3.493 12 O -0.543 6.543 13 N -0.601 5.601 14 C 0.084 3.916 15 C 0.215 3.785 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 21.987 1.152 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.085 3.915 4 C -0.228 4.228 5 C -0.107 4.107 6 C -0.176 4.176 7 C -0.098 4.098 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.168 4.168 11 C 0.294 3.706 12 O -0.420 6.420 13 N -0.333 5.333 14 C -0.060 4.060 15 C 0.094 3.906 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.065 21.320 1.695 22.524 hybrid contribution 0.445 -0.121 -0.223 0.513 sum -6.620 21.198 1.471 22.257 Atomic orbital electron populations 1.23071 0.78571 1.04204 1.00957 1.86183 1.21116 1.26468 1.88243 1.18938 0.91916 0.84352 0.96301 1.21214 0.99903 0.92418 1.09286 1.20882 0.94700 0.96790 0.98367 1.21024 0.93903 0.98300 1.04416 1.20954 1.00032 0.90983 0.97820 1.19412 0.90604 0.96177 1.04576 1.20172 0.99409 0.93542 0.96331 1.21607 1.00965 0.95974 0.98302 1.20413 0.81022 0.85360 0.83822 1.90657 1.53317 1.67065 1.30990 1.47849 1.53091 1.26722 1.05600 1.21645 0.98111 0.99077 0.87141 1.19646 0.91728 0.82070 0.97149 1.21356 0.95338 0.89250 1.50618 0.90790 1.24870 0.97912 0.95808 0.94521 1.69905 1.34978 0.98421 1.50454 0.86834 0.86116 0.77705 0.78932 1.19904 1.21113 1.19085 0.92867 0.92765 0.88030 0.85648 0.86127 0.86078 0.85305 0.90444 0.89716 0.89249 0.89845 0.93766 0.90708 0.92118 0.95353 0.94588 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.12 9.64 -19.42 -0.19 -4.31 16 3 C 0.13 1.66 6.66 -39.22 -0.26 1.40 16 4 C -0.21 -2.18 9.04 -39.43 -0.36 -2.54 16 5 C -0.09 -0.84 10.04 -39.60 -0.40 -1.23 16 6 C -0.16 -1.51 10.04 -39.56 -0.40 -1.91 16 7 C -0.08 -0.88 9.68 -39.61 -0.38 -1.26 16 8 C -0.11 -1.40 5.15 -104.47 -0.54 -1.93 16 9 C -0.06 -0.87 4.35 -27.88 -0.12 -0.99 16 10 C -0.13 -2.01 4.23 -27.89 -0.12 -2.13 16 11 C 0.51 10.74 7.67 -10.99 -0.08 10.66 16 12 O -0.54 -13.78 15.56 5.55 0.09 -13.70 16 13 N -0.60 -12.88 2.86 -182.95 -0.52 -13.41 16 14 C 0.08 1.35 10.24 59.85 0.61 1.97 16 15 C 0.21 5.43 4.23 -5.19 -0.02 5.41 16 16 C -0.53 -15.58 9.94 -34.44 -0.34 -15.93 16 17 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 20 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 25 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 28 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 31 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 32 H 0.08 1.48 7.66 -51.93 -0.40 1.09 16 33 H 0.09 1.36 7.40 -51.93 -0.38 0.98 16 34 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 38 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 39 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -35.77 334.91 -6.92 -42.69 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.93 Total: -0.99 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.51 Total: -5.22 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.25 Total: -40.86 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.10 Total: -18.00 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.77 -6.92 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.232 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds