Wall clock time and date at job start Mon Mar 30 2020 01:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47124 * 2 1 4 4 C 1.35714 * 116.99968 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91266 * 179.97438 * 4 3 2 6 6 C 1.37704 * 120.08906 * 180.02562 * 5 4 3 7 7 C 1.39741 * 119.91091 * 359.97438 * 6 5 4 8 8 C 1.47592 * 120.08849 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99947 * 336.01403 * 8 7 6 10 10 N 1.34783 * 120.00156 * 155.74489 * 8 7 6 11 11 C 1.46498 * 119.99567 * 354.82568 * 10 8 7 12 12 C 1.46499 * 119.99753 * 174.82720 * 10 8 7 13 13 H 1.08995 * 109.47515 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46746 * 239.99552 * 12 10 8 15 15 C 1.50697 * 109.47039 * 119.99976 * 12 10 8 16 16 H 1.08004 * 120.00157 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00201 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99507 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00088 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47198 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47056 * 120.00673 * 19 17 15 22 22 H 1.48504 * 109.46871 * 240.00305 * 19 17 15 23 23 C 1.39735 * 119.82084 * 0.25211 * 7 6 5 24 24 C 1.37705 * 119.91163 * 359.53715 * 23 7 6 25 25 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47097 * 300.00611 * 1 2 3 27 27 H 1.09001 * 109.46605 * 60.00061 * 1 2 3 28 28 H 1.09000 * 109.47097 * 239.99389 * 2 1 3 29 29 H 1.09001 * 109.46605 * 119.99939 * 2 1 3 30 30 H 1.08000 * 119.95523 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.04759 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47188 * 95.77112 * 11 10 8 33 33 H 1.09007 * 109.46549 * 215.76763 * 11 10 8 34 34 H 1.08994 * 109.47209 * 335.76523 * 11 10 8 35 35 H 1.09000 * 109.47329 * 60.00412 * 14 12 10 36 36 H 1.08999 * 109.47085 * 180.02562 * 14 12 10 37 37 H 1.08995 * 109.47195 * 300.00296 * 14 12 10 38 38 H 0.97003 * 119.99662 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.04496 * 179.74597 * 23 7 6 40 40 H 1.08000 * 119.95375 * 180.18621 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 3.8811 2.8102 -0.0011 6 6 5.2457 2.9948 -0.0022 7 6 6.0987 1.8879 -0.0022 8 6 7.5619 2.0813 -0.0039 9 8 8.0381 3.1143 -0.4333 10 7 8.3699 1.1149 0.4755 11 6 7.7939 -0.0777 1.1016 12 6 9.8242 1.2573 0.3706 13 1 10.0624 2.2008 -0.1204 14 6 10.3922 0.0979 -0.4505 15 6 10.4313 1.2409 1.7497 16 1 9.7973 1.1354 2.6177 17 6 11.7963 1.3606 1.9036 18 7 12.5683 1.4896 0.8467 19 14 12.5489 1.3395 3.6132 20 1 11.4736 1.1851 4.6256 21 1 13.4988 0.2033 3.7218 22 1 13.2727 2.6142 3.8511 23 6 5.5625 0.5975 -0.0064 24 6 4.1968 0.4214 -0.0009 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2213 3.6652 -0.0015 31 1 5.6563 3.9938 -0.0031 32 1 7.7261 -0.8781 0.3648 33 1 8.4292 -0.3972 1.9277 34 1 6.7978 0.1548 1.4782 35 1 9.9530 0.1098 -1.4481 36 1 11.4742 0.2036 -0.5282 37 1 10.1539 -0.8457 0.0402 38 1 13.5285 1.5741 0.9550 39 1 6.2184 -0.2605 -0.0105 40 1 3.7817 -0.5757 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:12 Heat of formation + Delta-G solvation = -32.129062 kcal Electronic energy + Delta-G solvation = -21315.046969 eV Core-core repulsion = 18096.035406 eV Total energy + Delta-G solvation = -3219.011562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41643 -39.16494 -37.00365 -35.39508 -33.09689 -32.15236 -30.99569 -30.19767 -28.63408 -26.41929 -25.22598 -24.35512 -23.10915 -22.03363 -20.77011 -18.91700 -18.23963 -16.87255 -16.35326 -16.27501 -16.04951 -15.28950 -14.66996 -14.44578 -14.34156 -13.80650 -13.56016 -13.49482 -13.15651 -12.88042 -12.52944 -12.46394 -12.23084 -12.01715 -11.85738 -11.60474 -11.35507 -11.06764 -10.95193 -10.79319 -10.70566 -10.48184 -10.24523 -10.15471 -9.19034 -9.00751 -8.95920 -8.42705 -8.17499 -7.57595 -6.06763 -4.14442 1.14471 1.37621 2.99157 3.26446 3.31859 3.34917 3.38110 3.91195 4.15713 4.40695 4.60553 4.61127 4.78659 4.87344 4.94617 5.09353 5.18035 5.24849 5.34348 5.43790 5.45538 5.67293 5.69534 5.73396 5.91477 6.02365 6.18540 6.27740 6.37108 6.52131 6.69676 6.75537 6.84144 7.06142 7.28168 7.43237 7.54785 7.72209 8.02255 8.20391 8.52185 8.84242 9.05922 9.51946 10.98704 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032742 B = 0.003652 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.956334 B = 7665.815768 C = 7830.034613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.316 6.316 4 C 0.142 3.858 5 C -0.164 4.164 6 C -0.026 4.026 7 C -0.158 4.158 8 C 0.546 3.454 9 O -0.550 6.550 10 N -0.586 5.586 11 C 0.072 3.928 12 C 0.257 3.743 13 H 0.064 0.936 14 C -0.147 4.147 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.063 4.063 24 C -0.222 4.222 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.011 0.989 36 H 0.094 0.906 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.150 0.850 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.300 -5.858 -1.136 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.230 6.230 4 C 0.096 3.904 5 C -0.182 4.182 6 C -0.045 4.045 7 C -0.162 4.162 8 C 0.334 3.666 9 O -0.430 6.430 10 N -0.316 5.316 11 C -0.072 4.072 12 C 0.157 3.843 13 H 0.082 0.918 14 C -0.205 4.205 15 C -0.563 4.563 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.081 4.081 24 C -0.240 4.240 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.168 0.832 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.969 -5.180 -1.401 20.678 hybrid contribution 0.532 -0.426 0.962 1.179 sum -19.437 -5.607 -0.439 20.234 Atomic orbital electron populations 1.21778 0.92803 1.02820 1.03505 1.22800 0.95795 0.82041 1.01609 1.86014 1.19310 1.29348 1.88345 1.19208 0.82004 0.94282 0.94865 1.20340 0.94961 0.94731 1.08191 1.21087 0.91405 0.99213 0.92765 1.20152 0.94470 0.93841 1.07699 1.18161 0.85579 0.83881 0.78961 1.90729 1.76542 1.26946 1.48741 1.48122 1.09070 1.18476 1.55967 1.22146 0.98949 0.87956 0.98138 1.18967 0.72191 0.96731 0.96366 0.91794 1.22093 1.04559 0.98033 0.95823 1.21354 0.92051 1.50916 0.92011 0.92146 1.24896 0.96996 0.94847 0.97070 1.69890 1.04776 1.49466 1.28475 0.86435 0.79142 0.77661 0.84128 1.19804 1.20954 1.20895 1.21962 0.94775 0.97671 0.93699 1.21162 0.94123 0.97936 1.10804 0.90391 0.91528 0.91540 0.91902 0.91866 0.84919 0.84249 0.93422 0.90351 0.91349 0.96982 0.88737 0.95142 0.92738 0.83246 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.42 5.45 37.16 0.20 0.62 16 3 O -0.32 -3.61 10.12 -18.85 -0.19 -3.80 16 4 C 0.14 1.81 6.70 -39.02 -0.26 1.55 16 5 C -0.16 -2.18 9.97 -39.50 -0.39 -2.57 16 6 C -0.03 -0.40 9.58 -39.22 -0.38 -0.78 16 7 C -0.16 -2.73 5.50 -104.96 -0.58 -3.31 16 8 C 0.55 11.98 7.49 -12.44 -0.09 11.89 16 9 O -0.55 -14.15 15.93 5.29 0.08 -14.07 16 10 N -0.59 -12.84 2.75 -176.47 -0.49 -13.32 16 11 C 0.07 1.21 7.73 59.85 0.46 1.68 16 12 C 0.26 6.66 2.63 -69.08 -0.18 6.48 16 13 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 14 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 15 C -0.52 -14.31 8.04 -34.44 -0.28 -14.59 16 16 H 0.06 1.63 7.24 -52.48 -0.38 1.25 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 19 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 C -0.06 -0.89 7.52 -39.22 -0.29 -1.18 16 24 C -0.22 -2.68 9.01 -39.50 -0.36 -3.03 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 29 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.14 2.16 7.83 -52.49 -0.41 1.75 16 32 H 0.05 0.70 7.13 -51.93 -0.37 0.33 16 33 H 0.08 1.41 6.96 -51.93 -0.36 1.04 16 34 H 0.07 1.00 5.11 -51.93 -0.27 0.74 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 37 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.15 1.93 4.41 -52.48 -0.23 1.70 16 40 H 0.13 1.19 6.28 -52.49 -0.33 0.86 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -32.12 325.01 -7.08 -39.20 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.46 Total: 0.88 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.52 Total: -5.29 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.14 Total: -37.94 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.11 Total: -17.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.12 -7.08 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.066 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds