Wall clock time and date at job start Mon Mar 30 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47124 * 2 1 4 4 C 1.35714 * 116.99968 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91266 * 179.97438 * 4 3 2 6 6 C 1.37704 * 120.08906 * 180.02562 * 5 4 3 7 7 C 1.39741 * 119.91091 * 359.97438 * 6 5 4 8 8 C 1.47592 * 120.08849 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99947 * 336.01403 * 8 7 6 10 10 N 1.34783 * 120.00156 * 155.74489 * 8 7 6 11 11 C 1.46498 * 119.99567 * 354.82568 * 10 8 7 12 12 C 1.46499 * 119.99753 * 174.82720 * 10 8 7 13 13 H 1.08995 * 109.47515 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46746 * 239.99552 * 12 10 8 15 15 C 1.50697 * 109.47039 * 119.99976 * 12 10 8 16 16 H 1.08004 * 120.00157 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00201 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99507 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00088 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47198 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47056 * 120.00673 * 19 17 15 22 22 H 1.48504 * 109.46871 * 240.00305 * 19 17 15 23 23 C 1.39735 * 119.82084 * 0.25211 * 7 6 5 24 24 C 1.37705 * 119.91163 * 359.53715 * 23 7 6 25 25 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47097 * 300.00611 * 1 2 3 27 27 H 1.09001 * 109.46605 * 60.00061 * 1 2 3 28 28 H 1.09000 * 109.47097 * 239.99389 * 2 1 3 29 29 H 1.09001 * 109.46605 * 119.99939 * 2 1 3 30 30 H 1.08000 * 119.95523 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.04759 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47188 * 95.77112 * 11 10 8 33 33 H 1.09007 * 109.46549 * 215.76763 * 11 10 8 34 34 H 1.08994 * 109.47209 * 335.76523 * 11 10 8 35 35 H 1.09000 * 109.47329 * 60.00412 * 14 12 10 36 36 H 1.08999 * 109.47085 * 180.02562 * 14 12 10 37 37 H 1.08995 * 109.47195 * 300.00296 * 14 12 10 38 38 H 0.97003 * 119.99662 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.04496 * 179.74597 * 23 7 6 40 40 H 1.08000 * 119.95375 * 180.18621 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 3.8811 2.8102 -0.0011 6 6 5.2457 2.9948 -0.0022 7 6 6.0987 1.8879 -0.0022 8 6 7.5619 2.0813 -0.0039 9 8 8.0381 3.1143 -0.4333 10 7 8.3699 1.1149 0.4755 11 6 7.7939 -0.0777 1.1016 12 6 9.8242 1.2573 0.3706 13 1 10.0624 2.2008 -0.1204 14 6 10.3922 0.0979 -0.4505 15 6 10.4313 1.2409 1.7497 16 1 9.7973 1.1354 2.6177 17 6 11.7963 1.3606 1.9036 18 7 12.5683 1.4896 0.8467 19 14 12.5489 1.3395 3.6132 20 1 11.4736 1.1851 4.6256 21 1 13.4988 0.2033 3.7218 22 1 13.2727 2.6142 3.8511 23 6 5.5625 0.5975 -0.0064 24 6 4.1968 0.4214 -0.0009 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2213 3.6652 -0.0015 31 1 5.6563 3.9938 -0.0031 32 1 7.7261 -0.8781 0.3648 33 1 8.4292 -0.3972 1.9277 34 1 6.7978 0.1548 1.4782 35 1 9.9530 0.1098 -1.4481 36 1 11.4742 0.2036 -0.5282 37 1 10.1539 -0.8457 0.0402 38 1 13.5285 1.5741 0.9550 39 1 6.2184 -0.2605 -0.0105 40 1 3.7817 -0.5757 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:11 Heat of formation + Delta-G solvation = -51.976455 kcal Electronic energy + Delta-G solvation = -21315.907616 eV Core-core repulsion = 18096.035406 eV Total energy + Delta-G solvation = -3219.872210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58906 -40.50092 -38.17685 -37.21668 -34.94748 -33.04557 -32.09783 -31.64191 -30.06968 -27.91239 -27.31665 -25.27210 -24.33574 -23.15470 -22.17450 -20.47719 -19.22981 -18.59331 -18.03704 -17.48073 -17.04784 -16.84113 -16.25079 -15.90615 -15.70354 -15.10439 -14.70400 -14.44764 -14.41613 -14.23996 -13.91401 -13.69273 -13.54480 -13.22865 -13.05507 -12.99248 -12.74041 -12.67741 -12.64222 -12.40148 -12.20466 -12.11284 -11.64273 -11.54805 -11.19539 -10.74893 -10.51670 -10.04635 -9.44712 -9.16929 -8.15563 -6.32137 -0.03939 0.31949 1.40125 1.42207 1.53559 1.90093 2.18413 2.29400 2.47775 2.82754 3.12538 3.67232 3.75893 3.87432 4.11887 4.15030 4.23074 4.33550 4.43326 4.45885 4.54544 4.62629 4.74615 4.87117 4.89798 4.95422 4.99382 5.02104 5.04656 5.11496 5.19832 5.31351 5.37437 5.48110 5.59241 5.66245 5.66678 6.03408 6.15414 6.39418 6.75389 6.78104 7.28583 7.44663 8.89207 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032742 B = 0.003652 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.956334 B = 7665.815768 C = 7830.034613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.324 6.324 4 C 0.152 3.848 5 C -0.165 4.165 6 C -0.036 4.036 7 C -0.186 4.186 8 C 0.537 3.463 9 O -0.607 6.607 10 N -0.593 5.593 11 C 0.068 3.932 12 C 0.261 3.739 13 H 0.007 0.993 14 C -0.131 4.131 15 C -0.539 4.539 16 H 0.060 0.940 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.286 1.286 23 C -0.056 4.056 24 C -0.210 4.210 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.265 0.735 39 H 0.165 0.835 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.936 -8.398 -0.065 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 O -0.238 6.238 4 C 0.106 3.894 5 C -0.183 4.183 6 C -0.055 4.055 7 C -0.189 4.189 8 C 0.328 3.672 9 O -0.491 6.491 10 N -0.322 5.322 11 C -0.074 4.074 12 C 0.159 3.841 13 H 0.025 0.975 14 C -0.190 4.190 15 C -0.577 4.577 16 H 0.078 0.922 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.212 1.212 23 C -0.074 4.074 24 C -0.228 4.228 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.168 0.832 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.182 0.818 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -22.648 -7.766 -0.317 23.945 hybrid contribution 1.173 0.354 0.588 1.358 sum -21.476 -7.412 0.270 22.720 Atomic orbital electron populations 1.21817 0.91508 1.04228 1.03164 1.23193 0.96926 0.80424 1.02923 1.86038 1.18189 1.31902 1.87666 1.19321 0.82978 0.94111 0.93038 1.20458 0.93985 0.96198 1.07674 1.21031 0.92444 0.98386 0.93622 1.19828 0.91307 0.96024 1.11787 1.18954 0.87676 0.82866 0.77729 1.90679 1.77983 1.29218 1.51219 1.48108 1.07629 1.20179 1.56292 1.22445 0.99719 0.86737 0.98470 1.18580 0.75061 0.94801 0.95675 0.97485 1.21869 1.02747 0.98114 0.96272 1.21595 0.92518 1.51111 0.92512 0.92174 1.25748 0.97457 0.94344 1.00932 1.70031 1.05058 1.49959 1.30581 0.85383 0.78371 0.77648 0.79464 1.18956 1.19723 1.21199 1.22045 0.95985 0.96401 0.92963 1.21475 0.92902 0.99519 1.08905 0.88105 0.91882 0.91922 0.90566 0.90427 0.83187 0.85657 0.90305 0.91318 0.88673 0.96003 0.91270 0.93082 0.92587 0.81832 0.81541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.98 0.74 -0.51 16 2 C 0.04 0.45 5.45 71.98 0.39 0.85 16 3 O -0.32 -6.25 10.12 -90.35 -0.91 -7.16 16 4 C 0.15 3.39 6.70 22.63 0.15 3.54 16 5 C -0.16 -4.14 9.97 22.32 0.22 -3.92 16 6 C -0.04 -1.12 9.58 22.51 0.22 -0.91 16 7 C -0.19 -6.41 5.50 -20.08 -0.11 -6.52 16 8 C 0.54 24.50 7.49 86.71 0.65 25.15 16 9 O -0.61 -33.56 15.93 -3.99 -0.06 -33.63 16 10 N -0.59 -26.42 2.75 -830.50 -2.29 -28.71 16 11 C 0.07 2.18 7.73 127.77 0.99 3.17 16 12 C 0.26 14.02 2.63 44.25 0.12 14.13 16 13 H 0.01 0.46 6.91 -2.39 -0.02 0.45 16 14 C -0.13 -6.42 8.97 71.98 0.65 -5.77 16 15 C -0.54 -30.03 8.04 25.60 0.21 -29.82 16 16 H 0.06 3.27 7.24 -2.91 -0.02 3.25 16 17 C 0.01 0.82 5.30 84.66 0.45 1.27 16 18 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 19 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 C -0.06 -1.43 7.52 22.51 0.17 -1.26 16 24 C -0.21 -4.21 9.01 22.33 0.20 -4.01 16 25 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.71 7.65 -2.39 -0.02 0.69 16 29 H 0.08 0.71 7.65 -2.39 -0.02 0.69 16 30 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.13 4.17 7.83 -2.91 -0.02 4.15 16 32 H 0.08 2.05 7.13 -2.39 -0.02 2.04 16 33 H 0.07 2.36 6.96 -2.38 -0.02 2.34 16 34 H 0.10 2.55 5.11 -2.39 -0.01 2.54 16 35 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 37 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.16 3.64 4.41 -2.91 -0.01 3.63 16 40 H 0.17 2.10 6.28 -2.91 -0.02 2.08 16 Total: -1.00 -73.84 325.01 5.08 -68.75 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.04 Total: 13.05 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.04 Total: -4.61 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.04 Total: -82.09 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.98 Total: -40.79 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -73.84 5.08 -68.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.776 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds