Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47071 * 2 1 4 4 C 1.35658 * 117.00069 * 179.97438 * 3 2 1 5 5 C 1.38702 * 120.14714 * 0.02562 * 4 3 2 6 6 C 1.38057 * 120.08680 * 179.97438 * 5 4 3 7 7 C 1.38548 * 120.39002 * 359.97438 * 6 5 4 8 8 C 1.37792 * 120.29366 * 359.97438 * 7 6 5 9 9 C 1.39701 * 119.91560 * 0.02562 * 8 7 6 10 10 C 1.47531 * 120.19727 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00216 * 126.88606 * 10 9 8 12 12 N 1.34777 * 119.99758 * 306.89524 * 10 9 8 13 13 C 1.46494 * 120.00421 * 4.99788 * 12 10 9 14 14 C 1.46505 * 119.99610 * 185.00343 * 12 10 9 15 15 H 1.08996 * 109.47583 * 359.97438 * 14 12 10 16 16 C 1.53003 * 109.46700 * 239.99483 * 14 12 10 17 17 C 1.50701 * 109.47409 * 119.99634 * 14 12 10 18 18 H 1.07999 * 119.99582 * 0.02562 * 17 14 12 19 19 C 1.37868 * 120.00092 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00035 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00040 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47058 * 60.00363 * 21 19 17 23 23 H 1.48505 * 109.47335 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47061 * 300.00453 * 21 19 17 25 25 H 1.09004 * 109.47260 * 59.99286 * 1 2 3 26 26 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46902 * 299.99877 * 1 2 3 28 28 H 1.08997 * 109.46783 * 240.00210 * 2 1 3 29 29 H 1.09005 * 109.46946 * 120.00269 * 2 1 3 30 30 H 1.08000 * 119.96043 * 359.94691 * 5 4 3 31 31 H 1.07998 * 119.80846 * 179.71995 * 6 5 4 32 32 H 1.07997 * 119.85022 * 179.97438 * 7 6 5 33 33 H 1.08006 * 120.04016 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47513 * 125.44509 * 13 12 10 35 35 H 1.09004 * 109.47370 * 245.44516 * 13 12 10 36 36 H 1.09001 * 109.46906 * 5.44115 * 13 12 10 37 37 H 1.09008 * 109.46641 * 179.97438 * 16 14 12 38 38 H 1.08998 * 109.47477 * 299.99682 * 16 14 12 39 39 H 1.09000 * 109.47097 * 60.00509 * 16 14 12 40 40 H 0.97006 * 119.99525 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1990 0.4272 0.0005 6 6 5.5674 0.6096 0.0005 7 6 6.1043 1.8868 0.0000 8 6 5.2769 2.9886 -0.0010 9 6 3.8902 2.8186 -0.0010 10 6 2.9985 3.9939 -0.0016 11 8 2.1276 4.0959 -0.8439 12 7 3.1494 4.9547 0.9315 13 6 4.2656 4.8878 1.8779 14 6 2.1970 6.0659 0.9993 15 1 1.4426 5.9459 0.2218 16 6 2.9394 7.3872 0.7894 17 6 1.5296 6.0738 2.3504 18 1 1.7893 5.3262 3.0853 19 6 0.5885 7.0361 2.6488 20 7 0.2727 7.9468 1.7540 21 14 -0.2393 7.0455 4.3233 22 1 0.7885 7.2085 5.3827 23 1 -1.2046 8.1719 4.3921 24 1 -0.9604 5.7632 4.5263 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7881 -0.5715 0.0009 31 1 6.2234 -0.2484 0.0051 32 1 7.1761 2.0194 0.0005 33 1 5.6998 3.9824 -0.0018 34 1 4.8331 5.8175 1.8368 35 1 3.8786 4.7428 2.8866 36 1 4.9156 4.0534 1.6147 37 1 2.2307 8.2140 0.8394 38 1 3.6940 7.5075 1.5667 39 1 3.4220 7.3815 -0.1879 40 1 -0.3898 8.6236 1.9639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -38.572944 kcal Electronic energy + Delta-G solvation = -22010.173888 eV Core-core repulsion = 18790.882898 eV Total energy + Delta-G solvation = -3219.290990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37360 -38.58882 -37.22516 -35.18109 -32.89673 -31.93914 -31.15047 -29.56098 -28.87501 -26.10439 -25.16440 -24.08038 -23.48695 -21.56508 -20.92439 -18.91163 -17.79627 -16.72634 -16.21955 -16.00164 -15.95939 -15.35547 -14.90827 -14.44552 -14.08297 -14.01949 -13.30421 -13.23820 -12.91366 -12.57146 -12.46274 -12.33213 -11.98658 -11.91951 -11.52443 -11.49944 -11.25761 -11.03543 -10.89408 -10.76923 -10.70397 -10.61525 -10.20440 -10.09202 -9.12616 -9.02112 -8.72598 -8.36341 -8.11764 -7.46131 -6.01140 -4.08588 1.16188 1.45948 3.26227 3.31509 3.36009 3.37114 3.42632 3.80125 4.15077 4.44651 4.75556 4.87902 4.91807 5.02932 5.07296 5.20631 5.29123 5.33441 5.36868 5.46990 5.71654 5.81824 5.83385 5.90473 6.11439 6.15515 6.28813 6.32631 6.44656 6.46117 6.76246 6.82831 6.89807 7.13224 7.47356 7.54010 7.62545 7.78378 8.09468 8.26501 8.61711 8.90029 9.15324 9.57434 11.04191 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.005721 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.771719 B = 4893.105630 C = 5759.888857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.292 6.292 4 C 0.173 3.827 5 C -0.218 4.218 6 C -0.070 4.070 7 C -0.168 4.168 8 C -0.054 4.054 9 C -0.148 4.148 10 C 0.554 3.446 11 O -0.538 6.538 12 N -0.587 5.587 13 C 0.072 3.928 14 C 0.260 3.740 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.523 4.523 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.011 0.989 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 -14.929 -1.610 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.204 6.204 4 C 0.126 3.874 5 C -0.237 4.237 6 C -0.088 4.088 7 C -0.186 4.186 8 C -0.072 4.072 9 C -0.152 4.152 10 C 0.340 3.660 11 O -0.416 6.416 12 N -0.318 5.318 13 C -0.072 4.072 14 C 0.160 3.840 15 H 0.081 0.919 16 C -0.205 4.205 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.030 0.970 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.081 -14.524 -2.062 17.253 hybrid contribution -0.284 -0.215 1.086 1.143 sum 8.797 -14.739 -0.976 17.192 Atomic orbital electron populations 1.21764 0.92591 1.02365 1.04275 1.22812 0.96341 0.82094 1.00887 1.86273 1.18271 1.28745 1.87140 1.18929 0.82888 0.92616 0.93005 1.21157 0.94379 0.97698 1.10477 1.20980 0.94128 0.97309 0.96393 1.20933 0.99800 0.92197 1.05664 1.21163 0.91021 0.99653 0.95410 1.19576 0.94161 0.92252 1.09174 1.17932 0.83744 0.82125 0.82221 1.90739 1.34873 1.78066 1.37968 1.48124 1.28351 1.24973 1.30311 1.21904 0.89660 1.01320 0.94315 1.18921 0.86489 0.80403 0.98222 0.91895 1.22076 1.00058 1.02055 0.96287 1.21277 1.22412 1.13290 0.99179 0.92367 1.24880 0.96380 0.95297 0.97227 1.69878 1.32645 1.16223 1.33955 0.86563 0.79258 0.77581 0.84007 1.20270 1.21170 1.20297 0.91195 0.90628 0.91212 0.92183 0.92216 0.85288 0.85790 0.85563 0.84598 0.92338 0.92392 0.91280 0.88822 0.95132 0.96961 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 2 C 0.05 0.67 5.46 37.16 0.20 0.88 16 3 O -0.29 -5.31 9.30 -23.13 -0.22 -5.52 16 4 C 0.17 2.94 6.68 -38.70 -0.26 2.68 16 5 C -0.22 -2.79 9.03 -39.48 -0.36 -3.15 16 6 C -0.07 -0.77 10.03 -39.53 -0.40 -1.16 16 7 C -0.17 -1.92 10.02 -39.63 -0.40 -2.31 16 8 C -0.05 -0.77 7.34 -39.20 -0.29 -1.06 16 9 C -0.15 -2.71 5.06 -104.85 -0.53 -3.24 16 10 C 0.55 12.82 6.86 -12.47 -0.09 12.73 16 11 O -0.54 -14.63 16.05 0.83 0.01 -14.62 16 12 N -0.59 -13.48 2.75 -176.49 -0.49 -13.97 16 13 C 0.07 1.31 9.33 59.84 0.56 1.86 16 14 C 0.26 6.96 2.63 -69.08 -0.18 6.77 16 15 H 0.06 1.95 6.91 -51.93 -0.36 1.59 16 16 C -0.15 -3.62 8.88 37.16 0.33 -3.29 16 17 C -0.52 -14.67 8.34 -34.44 -0.29 -14.95 16 18 H 0.06 1.62 7.10 -52.49 -0.37 1.24 16 19 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 20 N -0.89 -25.72 11.32 55.43 0.63 -25.10 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 29 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.77 7.09 -52.48 -0.37 1.40 16 34 H 0.06 0.99 6.94 -51.93 -0.36 0.63 16 35 H 0.06 1.09 7.36 -51.93 -0.38 0.71 16 36 H 0.07 1.05 3.92 -51.93 -0.20 0.85 16 37 H 0.09 2.52 6.07 -51.92 -0.32 2.21 16 38 H 0.03 0.69 7.01 -51.93 -0.36 0.33 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -33.88 326.55 -7.09 -40.97 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.53 Total: 0.73 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.40 Total: -3.93 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.14 Total: -39.07 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.20 Total: -20.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.88 -7.09 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.392 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds