Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47071 * 2 1 4 4 C 1.35658 * 117.00069 * 179.97438 * 3 2 1 5 5 C 1.38702 * 120.14714 * 0.02562 * 4 3 2 6 6 C 1.38057 * 120.08680 * 179.97438 * 5 4 3 7 7 C 1.38548 * 120.39002 * 359.97438 * 6 5 4 8 8 C 1.37792 * 120.29366 * 359.97438 * 7 6 5 9 9 C 1.39701 * 119.91560 * 0.02562 * 8 7 6 10 10 C 1.47531 * 120.19727 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00216 * 126.88606 * 10 9 8 12 12 N 1.34777 * 119.99758 * 306.89524 * 10 9 8 13 13 C 1.46494 * 120.00421 * 4.99788 * 12 10 9 14 14 C 1.46505 * 119.99610 * 185.00343 * 12 10 9 15 15 H 1.08996 * 109.47583 * 359.97438 * 14 12 10 16 16 C 1.53003 * 109.46700 * 239.99483 * 14 12 10 17 17 C 1.50701 * 109.47409 * 119.99634 * 14 12 10 18 18 H 1.07999 * 119.99582 * 0.02562 * 17 14 12 19 19 C 1.37868 * 120.00092 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00035 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00040 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47058 * 60.00363 * 21 19 17 23 23 H 1.48505 * 109.47335 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47061 * 300.00453 * 21 19 17 25 25 H 1.09004 * 109.47260 * 59.99286 * 1 2 3 26 26 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46902 * 299.99877 * 1 2 3 28 28 H 1.08997 * 109.46783 * 240.00210 * 2 1 3 29 29 H 1.09005 * 109.46946 * 120.00269 * 2 1 3 30 30 H 1.08000 * 119.96043 * 359.94691 * 5 4 3 31 31 H 1.07998 * 119.80846 * 179.71995 * 6 5 4 32 32 H 1.07997 * 119.85022 * 179.97438 * 7 6 5 33 33 H 1.08006 * 120.04016 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47513 * 125.44509 * 13 12 10 35 35 H 1.09004 * 109.47370 * 245.44516 * 13 12 10 36 36 H 1.09001 * 109.46906 * 5.44115 * 13 12 10 37 37 H 1.09008 * 109.46641 * 179.97438 * 16 14 12 38 38 H 1.08998 * 109.47477 * 299.99682 * 16 14 12 39 39 H 1.09000 * 109.47097 * 60.00509 * 16 14 12 40 40 H 0.97006 * 119.99525 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1990 0.4272 0.0005 6 6 5.5674 0.6096 0.0005 7 6 6.1043 1.8868 0.0000 8 6 5.2769 2.9886 -0.0010 9 6 3.8902 2.8186 -0.0010 10 6 2.9985 3.9939 -0.0016 11 8 2.1276 4.0959 -0.8439 12 7 3.1494 4.9547 0.9315 13 6 4.2656 4.8878 1.8779 14 6 2.1970 6.0659 0.9993 15 1 1.4426 5.9459 0.2218 16 6 2.9394 7.3872 0.7894 17 6 1.5296 6.0738 2.3504 18 1 1.7893 5.3262 3.0853 19 6 0.5885 7.0361 2.6488 20 7 0.2727 7.9468 1.7540 21 14 -0.2393 7.0455 4.3233 22 1 0.7885 7.2085 5.3827 23 1 -1.2046 8.1719 4.3921 24 1 -0.9604 5.7632 4.5263 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7881 -0.5715 0.0009 31 1 6.2234 -0.2484 0.0051 32 1 7.1761 2.0194 0.0005 33 1 5.6998 3.9824 -0.0018 34 1 4.8331 5.8175 1.8368 35 1 3.8786 4.7428 2.8866 36 1 4.9156 4.0534 1.6147 37 1 2.2307 8.2140 0.8394 38 1 3.6940 7.5075 1.5667 39 1 3.4220 7.3815 -0.1879 40 1 -0.3898 8.6236 1.9639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -60.599302 kcal Electronic energy + Delta-G solvation = -22011.129023 eV Core-core repulsion = 18790.882898 eV Total energy + Delta-G solvation = -3220.246125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63592 -40.14833 -38.36910 -37.11859 -34.86722 -32.99712 -32.49042 -30.90128 -30.39039 -27.70850 -27.33003 -25.15269 -24.83008 -22.60717 -22.55553 -20.49708 -19.01641 -18.56695 -17.97586 -17.42466 -17.11074 -16.90681 -16.40634 -15.79738 -15.63698 -15.36320 -14.70585 -14.47980 -14.37714 -14.25069 -13.89219 -13.53143 -13.42297 -13.27725 -12.98403 -12.90693 -12.72598 -12.69513 -12.63764 -12.41381 -12.20612 -12.13384 -11.95099 -11.66577 -11.23214 -10.72755 -10.52148 -9.90505 -9.37380 -9.16631 -8.16352 -6.33529 0.07108 0.43575 1.38203 1.41615 1.49148 1.82323 2.23906 2.31864 2.47241 2.80577 3.10753 3.65912 3.85578 3.98048 4.00606 4.18157 4.25625 4.33290 4.39864 4.43379 4.53744 4.64757 4.75167 4.80941 4.86014 4.86283 4.92057 4.97587 5.02275 5.14773 5.27401 5.36919 5.44636 5.49390 5.59818 5.64246 5.84112 6.02670 6.13498 6.46484 6.72883 6.79658 7.28445 7.45217 8.88157 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.005721 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.771719 B = 4893.105630 C = 5759.888857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 O -0.341 6.341 4 C 0.147 3.853 5 C -0.213 4.213 6 C -0.052 4.052 7 C -0.153 4.153 8 C -0.059 4.059 9 C -0.188 4.188 10 C 0.545 3.455 11 O -0.599 6.599 12 N -0.594 5.594 13 C 0.071 3.929 14 C 0.262 3.738 15 H 0.004 0.996 16 C -0.130 4.130 17 C -0.540 4.540 18 H 0.056 0.944 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.967 3.033 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.049 0.951 26 H 0.114 0.886 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.144 0.856 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.020 0.980 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.850 -17.571 -0.160 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.255 6.255 4 C 0.100 3.900 5 C -0.231 4.231 6 C -0.070 4.070 7 C -0.171 4.171 8 C -0.078 4.078 9 C -0.192 4.192 10 C 0.335 3.665 11 O -0.482 6.482 12 N -0.324 5.324 13 C -0.071 4.071 14 C 0.160 3.840 15 H 0.022 0.978 16 C -0.189 4.189 17 C -0.579 4.579 18 H 0.074 0.926 19 C -0.185 4.185 20 N -0.556 5.556 21 Si 0.791 3.209 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.205 1.205 25 H 0.068 0.932 26 H 0.133 0.867 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.176 0.824 31 H 0.189 0.811 32 H 0.185 0.815 33 H 0.162 0.838 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.111 -17.179 -0.589 21.028 hybrid contribution -1.168 0.500 0.568 1.392 sum 10.944 -16.679 -0.021 19.949 Atomic orbital electron populations 1.21827 0.92689 1.04217 1.02220 1.23140 0.96406 0.80414 1.02923 1.86222 1.19647 1.31958 1.87664 1.19285 0.83068 0.93344 0.94302 1.21512 0.94898 0.97544 1.09143 1.21585 0.93744 0.98723 0.92958 1.21404 1.01382 0.91277 1.03045 1.21324 0.89412 1.01467 0.95554 1.19392 0.95077 0.90669 1.14067 1.18824 0.83647 0.83100 0.80958 1.90675 1.37838 1.79414 1.40266 1.48133 1.28776 1.24171 1.31293 1.22130 0.88608 1.03575 0.92738 1.18543 0.86728 0.82749 0.95942 0.97816 1.21849 0.99616 1.00020 0.97392 1.21492 1.23346 1.13531 0.99509 0.92575 1.25761 0.96781 0.94753 1.01168 1.70025 1.32980 1.16680 1.35879 0.85484 0.78443 0.77452 0.79477 1.18512 1.20435 1.20461 0.93200 0.86725 0.93293 0.90022 0.89928 0.82418 0.81127 0.81474 0.83829 0.90914 0.93185 0.87846 0.91201 0.93155 0.96117 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 10.28 71.98 0.74 -2.86 16 2 C 0.05 1.10 5.46 71.98 0.39 1.49 16 3 O -0.34 -12.88 9.30 -85.48 -0.80 -13.67 16 4 C 0.15 4.94 6.68 22.84 0.15 5.10 16 5 C -0.21 -4.69 9.03 22.34 0.20 -4.49 16 6 C -0.05 -0.85 10.03 22.30 0.22 -0.63 16 7 C -0.15 -2.74 10.02 22.24 0.22 -2.52 16 8 C -0.06 -1.57 7.34 22.52 0.17 -1.40 16 9 C -0.19 -6.98 5.06 -20.01 -0.10 -7.08 16 10 C 0.55 26.79 6.86 86.69 0.59 27.39 16 11 O -0.60 -35.55 16.05 0.26 0.00 -35.54 16 12 N -0.59 -28.53 2.75 -830.56 -2.29 -30.81 16 13 C 0.07 2.58 9.33 127.77 1.19 3.77 16 14 C 0.26 14.88 2.63 44.25 0.12 14.99 16 15 H 0.00 0.26 6.91 -2.39 -0.02 0.24 16 16 C -0.13 -6.69 8.88 71.98 0.64 -6.05 16 17 C -0.54 -31.46 8.34 25.60 0.21 -31.25 16 18 H 0.06 3.21 7.10 -2.91 -0.02 3.19 16 19 C 0.01 0.86 5.30 84.65 0.45 1.31 16 20 N -0.92 -55.02 11.32 21.44 0.24 -54.78 16 21 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.58 7.66 -2.39 -0.02 1.56 16 29 H 0.08 1.58 7.66 -2.38 -0.02 1.56 16 30 H 0.16 2.47 6.30 -2.91 -0.02 2.45 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.14 3.44 7.09 -2.91 -0.02 3.42 16 34 H 0.07 2.39 6.94 -2.39 -0.02 2.37 16 35 H 0.05 1.87 7.36 -2.39 -0.02 1.86 16 36 H 0.10 3.00 3.92 -2.39 -0.01 2.99 16 37 H 0.07 3.93 6.07 -2.38 -0.01 3.91 16 38 H 0.05 2.32 7.01 -2.39 -0.02 2.30 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -81.97 326.55 5.43 -76.54 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.04 Total: 13.66 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 5.20 Total: -2.23 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.04 Total: -85.59 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.79 Total: -49.22 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -81.97 5.43 -76.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.941 kcal (2) G-P(sol) polarization free energy of solvation -81.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds