Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.46803 * 2 1 4 4 C 1.37097 * 119.99953 * 269.24338 * 3 2 1 5 5 H 1.08001 * 119.99665 * 141.53503 * 4 3 2 6 6 C 1.38953 * 120.00090 * 321.53714 * 4 3 2 7 7 N 1.31407 * 119.99789 * 341.28694 * 6 4 3 8 8 Si 1.86803 * 119.99588 * 161.28279 * 6 4 3 9 9 H 1.48500 * 109.47336 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46773 * 120.00073 * 8 6 4 11 11 H 1.48500 * 109.47070 * 240.00096 * 8 6 4 12 12 C 1.34779 * 119.99748 * 89.25062 * 3 2 1 13 13 O 1.21291 * 119.99465 * 185.31001 * 12 3 2 14 14 C 1.50697 * 119.99941 * 5.30577 * 12 3 2 15 15 H 1.08998 * 109.47755 * 313.69257 * 14 12 3 16 16 C 1.53005 * 109.47160 * 73.69115 * 14 12 3 17 17 O 1.42896 * 109.47064 * 193.68753 * 14 12 3 18 18 C 1.35903 * 117.00207 * 153.89674 * 17 14 12 19 19 C 1.38746 * 120.05869 * 185.83003 * 18 17 14 20 20 C 1.38128 * 119.94437 * 180.02562 * 19 18 17 21 21 C 1.38287 * 120.05760 * 359.97438 * 20 19 18 22 22 C 1.38245 * 120.10728 * 0.03968 * 21 20 19 23 23 C 1.50704 * 119.96958 * 179.97438 * 22 21 20 24 24 C 1.38169 * 120.05657 * 359.67752 * 22 21 20 25 25 H 1.09002 * 109.47388 * 59.99718 * 1 2 3 26 26 H 1.08996 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47291 * 300.00012 * 1 2 3 28 28 H 1.09004 * 109.47003 * 240.00450 * 2 1 3 29 29 H 1.08992 * 109.47304 * 120.00193 * 2 1 3 30 30 H 0.97004 * 119.99447 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47276 * 296.73237 * 16 14 12 32 32 H 1.08999 * 109.47021 * 176.72738 * 16 14 12 33 33 H 1.09008 * 109.47056 * 56.73123 * 16 14 12 34 34 H 1.08002 * 120.02873 * 0.03463 * 19 18 17 35 35 H 1.08001 * 119.96846 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.94707 * 180.02562 * 21 20 19 37 37 H 1.08996 * 109.47905 * 89.99579 * 23 22 21 38 38 H 1.09005 * 109.46668 * 209.99839 * 23 22 21 39 39 H 1.09000 * 109.46946 * 329.99336 * 23 22 21 40 40 H 1.08002 * 120.02333 * 180.29676 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2615 2.0224 -1.1872 5 1 2.0156 3.0684 -1.2963 6 6 2.8243 1.3264 -2.2500 7 7 3.4553 0.1943 -2.0335 8 14 2.6838 2.0002 -3.9866 9 1 1.9304 3.2796 -3.9618 10 1 4.0425 2.2358 -4.5376 11 1 1.9661 1.0203 -4.8412 12 6 2.2285 2.0217 1.1671 13 8 2.5397 3.1940 1.1681 14 6 2.0766 1.2813 2.4709 15 1 1.1532 0.7025 2.4547 16 6 3.2661 0.3384 2.6634 17 8 2.0326 2.2185 3.5486 18 6 1.3791 1.8323 4.6759 19 6 1.1925 2.7333 5.7143 20 6 0.5285 2.3381 6.8592 21 6 0.0494 1.0456 6.9708 22 6 0.2344 0.1459 5.9377 23 6 -0.2885 -1.2620 6.0628 24 6 0.8928 0.5381 4.7880 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8486 -0.2914 -2.7754 31 1 3.2663 -0.4124 1.8732 32 1 3.1863 -0.1540 3.6325 33 1 4.1934 0.9100 2.6216 34 1 1.5659 3.7430 5.6274 35 1 0.3826 3.0393 7.6676 36 1 -0.4698 0.7386 7.8666 37 1 -1.3068 -1.3072 5.6770 38 1 0.3472 -1.9378 5.4906 39 1 -0.2837 -1.5594 7.1114 40 1 1.0328 -0.1639 3.9792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = -62.536351 kcal Electronic energy + Delta-G solvation = -21957.124364 eV Core-core repulsion = 18736.794243 eV Total energy + Delta-G solvation = -3220.330121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62324 -40.28906 -38.47172 -36.95293 -34.38248 -33.64969 -32.37160 -31.25117 -30.83388 -27.77549 -27.34159 -25.50550 -23.94682 -23.16018 -22.39202 -20.83426 -19.06900 -18.71916 -17.73181 -17.27809 -16.86647 -16.58275 -16.44958 -15.88139 -15.59601 -15.10197 -14.76895 -14.64255 -14.38198 -14.14609 -13.94203 -13.81242 -13.61543 -13.41363 -13.12726 -12.94132 -12.89292 -12.71792 -12.58105 -12.34820 -12.29345 -12.08038 -11.89315 -11.77673 -11.66287 -10.95428 -10.39501 -9.74059 -9.48899 -9.10865 -8.37323 -6.14208 0.38702 0.49752 1.34597 1.40925 1.53960 1.86076 1.93456 2.35738 2.82037 2.95349 3.08338 3.63230 3.78223 3.88909 3.96296 3.99418 4.18788 4.23023 4.38576 4.45848 4.55107 4.57752 4.59528 4.74249 4.77550 4.83514 4.88838 4.94101 4.96711 5.10121 5.27144 5.31593 5.40603 5.41804 5.51486 5.53147 5.66992 5.91479 6.17013 6.39680 6.55930 7.11242 7.34683 7.95155 8.64737 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030475 B = 0.004506 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.560399 B = 6211.848113 C = 6644.069942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.083 3.917 3 N -0.440 5.440 4 C -0.345 4.345 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.883 5.883 8 Si 0.983 3.017 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.259 1.259 12 C 0.445 3.555 13 O -0.620 6.620 14 C 0.085 3.915 15 H 0.105 0.895 16 C -0.160 4.160 17 O -0.319 6.319 18 C 0.106 3.894 19 C -0.184 4.184 20 C -0.073 4.073 21 C -0.163 4.163 22 C -0.050 4.050 23 C -0.114 4.114 24 C -0.223 4.223 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.276 0.724 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.121 0.879 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -8.262 14.363 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.040 4.040 3 N -0.159 5.159 4 C -0.473 4.473 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.520 5.520 8 Si 0.806 3.194 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.184 1.184 12 C 0.234 3.766 13 O -0.506 6.506 14 C 0.026 3.974 15 H 0.122 0.878 16 C -0.218 4.218 17 O -0.233 6.233 18 C 0.061 3.939 19 C -0.202 4.202 20 C -0.091 4.091 21 C -0.181 4.181 22 C -0.050 4.050 23 C -0.170 4.170 24 C -0.242 4.242 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.739 -7.690 14.183 17.894 hybrid contribution 0.382 0.659 -1.240 1.455 sum -7.357 -7.032 12.944 16.465 Atomic orbital electron populations 1.22118 0.95428 1.02801 1.01071 1.21971 0.94199 0.83278 1.04555 1.43630 1.55702 1.13350 1.03264 1.19387 1.42268 0.96378 0.89276 0.92270 1.26091 0.93040 0.96636 1.03500 1.69921 1.31530 1.16932 1.33650 0.85050 0.78237 0.78651 0.77426 1.19940 1.20278 1.18388 1.20888 0.81433 0.88086 0.86195 1.90489 1.53331 1.18890 1.87906 1.22167 1.01653 0.89693 0.83936 0.87791 1.22241 0.96465 0.98695 1.04366 1.86199 1.71085 1.43631 1.22346 1.19566 0.93111 0.94407 0.86822 1.20677 1.05835 0.99582 0.94137 1.21265 0.94732 0.97081 0.96020 1.21324 1.03298 0.93283 1.00162 1.20123 0.94832 0.97801 0.92290 1.20889 1.01648 0.90442 1.04066 1.21356 1.06359 0.95216 1.01264 0.93803 0.88916 0.93695 0.88621 0.90440 0.91373 0.89196 0.88684 0.93248 0.86096 0.82580 0.82859 0.89983 0.90987 0.89464 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 10.14 71.98 0.73 -4.64 16 2 C 0.08 3.44 5.26 86.38 0.45 3.90 16 3 N -0.44 -22.91 2.52 -635.52 -1.60 -24.50 16 4 C -0.35 -19.87 8.93 84.04 0.75 -19.12 16 5 H 0.06 3.71 7.72 -2.91 -0.02 3.68 16 6 C 0.01 0.56 5.01 84.93 0.43 0.99 16 7 N -0.88 -46.22 11.37 21.66 0.25 -45.97 16 8 Si 0.98 42.09 29.59 68.60 2.03 44.12 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 12 C 0.45 23.71 6.93 87.66 0.61 24.31 16 13 O -0.62 -39.24 16.42 15.61 0.26 -38.99 16 14 C 0.09 3.47 1.79 29.85 0.05 3.53 16 15 H 0.10 3.68 4.65 -2.39 -0.01 3.67 16 16 C -0.16 -5.63 8.88 71.98 0.64 -4.99 16 17 O -0.32 -13.70 9.36 -73.79 -0.69 -14.39 16 18 C 0.11 3.63 6.60 22.50 0.15 3.78 16 19 C -0.18 -5.51 9.99 22.37 0.22 -5.28 16 20 C -0.07 -1.61 10.04 22.26 0.22 -1.38 16 21 C -0.16 -3.17 9.70 22.28 0.22 -2.96 16 22 C -0.05 -1.09 5.88 -19.88 -0.12 -1.21 16 23 C -0.11 -1.64 10.01 71.24 0.71 -0.92 16 24 C -0.22 -6.20 7.93 22.37 0.18 -6.03 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.04 1.48 7.41 -2.39 -0.02 1.47 16 28 H 0.10 4.39 5.49 -2.38 -0.01 4.38 16 29 H 0.08 2.78 4.50 -2.39 -0.01 2.77 16 30 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.09 3.04 6.02 -2.39 -0.01 3.02 16 32 H 0.09 2.68 7.08 -2.39 -0.02 2.66 16 33 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 39 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 40 H 0.13 3.46 5.52 -2.91 -0.02 3.45 16 Total: -1.00 -73.66 327.28 6.53 -67.13 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 1.04 Total: 22.62 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.25 Total: -10.02 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -1.35 Total: -70.48 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -0.43 Total: -53.37 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.66 6.53 -67.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.597 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds