Wall clock time and date at job start Mon Mar 30 2020 01:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47072 * 2 1 4 4 C 1.37098 * 120.00046 * 262.97468 * 3 2 1 5 5 H 1.08001 * 119.99163 * 142.21112 * 4 3 2 6 6 C 1.38943 * 120.00019 * 322.21861 * 4 3 2 7 7 N 1.31411 * 119.99905 * 157.13880 * 6 4 3 8 8 Si 1.86796 * 120.00247 * 337.13079 * 6 4 3 9 9 H 1.48503 * 109.46942 * 95.20874 * 8 6 4 10 10 H 1.48501 * 109.47293 * 215.20642 * 8 6 4 11 11 H 1.48501 * 109.47177 * 335.21134 * 8 6 4 12 12 C 1.34775 * 119.99537 * 82.98201 * 3 2 1 13 13 O 1.21297 * 119.99905 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00466 * 359.97438 * 12 3 2 15 15 C 1.52998 * 109.47134 * 180.02562 * 14 12 3 16 16 C 1.50699 * 109.47134 * 179.97438 * 15 14 12 17 17 C 1.38164 * 120.02907 * 265.00145 * 16 15 14 18 18 C 1.38250 * 120.05591 * 179.97438 * 17 16 15 19 19 C 1.38283 * 120.11426 * 0.02562 * 18 17 16 20 20 C 1.38127 * 120.05453 * 0.02562 * 19 18 17 21 21 C 1.38711 * 120.02826 * 84.72132 * 16 15 14 22 22 O 1.35902 * 120.05714 * 359.97438 * 21 16 15 23 23 C 1.42899 * 117.00225 * 180.02562 * 22 21 16 24 24 H 1.08991 * 109.47083 * 59.99496 * 1 2 3 25 25 H 1.08998 * 109.46619 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46616 * 299.99675 * 1 2 3 27 27 H 1.08999 * 109.47222 * 240.00577 * 2 1 3 28 28 H 1.09005 * 109.47293 * 120.00429 * 2 1 3 29 29 H 0.96998 * 120.00502 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47155 * 60.00030 * 14 12 3 31 31 H 1.09002 * 109.46986 * 300.00019 * 14 12 3 32 32 H 1.09002 * 109.47447 * 59.99754 * 15 14 12 33 33 H 1.09005 * 109.47287 * 299.99431 * 15 14 12 34 34 H 1.07999 * 119.96952 * 359.97211 * 17 16 15 35 35 H 1.08005 * 119.94209 * 179.97438 * 18 17 16 36 36 H 1.07998 * 119.97463 * 180.02562 * 19 18 17 37 37 H 1.07995 * 120.02848 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47094 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.47089 * 300.00570 * 23 22 21 40 40 H 1.08999 * 109.47075 * 60.00452 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3837 1.9791 -1.1784 5 1 2.1621 3.0228 -1.3457 6 6 3.0390 1.2423 -2.1573 7 7 2.9965 1.6320 -3.4116 8 14 3.9806 -0.3019 -1.6904 9 1 3.1111 -1.4898 -1.8859 10 1 5.1866 -0.4247 -2.5482 11 1 4.3925 -0.2190 -0.2661 12 6 2.1085 2.0640 1.1585 13 8 2.5132 3.2075 1.1586 14 6 1.7064 1.4070 2.4537 15 6 1.9034 2.3919 3.6079 16 6 1.5007 1.7350 4.9030 17 6 0.2253 1.9154 5.4025 18 6 -0.1449 1.3127 6.5904 19 6 0.7601 0.5284 7.2819 20 6 2.0368 0.3457 6.7873 21 6 2.4085 0.9440 5.5918 22 8 3.6618 0.7599 5.0994 23 6 4.5431 -0.0674 5.8614 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.4543 1.1179 -4.0950 30 1 2.3233 0.5238 2.6200 31 1 0.6580 1.1133 2.4020 32 1 1.2862 3.2748 3.4415 33 1 2.9517 2.6859 3.6598 34 1 -0.4832 2.5279 4.8646 35 1 -1.1423 1.4553 6.9794 36 1 0.4684 0.0582 8.2094 37 1 2.7433 -0.2666 7.3279 38 1 5.5077 -0.1312 5.3578 39 1 4.6785 0.3631 6.8536 40 1 4.1153 -1.0657 5.9537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:08 Heat of formation + Delta-G solvation = -65.769346 kcal Electronic energy + Delta-G solvation = -21715.362358 eV Core-core repulsion = 18494.892043 eV Total energy + Delta-G solvation = -3220.470315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25721 -40.55027 -38.31610 -37.11024 -35.01689 -34.25309 -31.39438 -31.10122 -30.65684 -28.16562 -27.31163 -25.07482 -24.34919 -22.98786 -22.08653 -20.45737 -18.93340 -18.80490 -17.87364 -17.48593 -17.25182 -16.60212 -16.29358 -16.25129 -15.63842 -15.27062 -15.08811 -14.76042 -14.50515 -14.28200 -14.16244 -13.88715 -13.58628 -13.45674 -13.12198 -12.79429 -12.74937 -12.67283 -12.49841 -12.41201 -11.98836 -11.96021 -11.86193 -11.60430 -11.52097 -11.06302 -10.39419 -9.73936 -9.70935 -9.03567 -8.52462 -6.12944 0.41414 0.55069 1.16778 1.29694 1.42704 1.96020 2.16851 2.46690 2.68609 2.87220 2.97828 3.73889 3.90671 4.00808 4.07261 4.16974 4.21898 4.32969 4.36490 4.40998 4.42843 4.49472 4.56789 4.58670 4.65530 4.73885 4.78207 4.93163 4.98196 5.03800 5.10660 5.28859 5.38881 5.46957 5.55768 5.58762 5.67712 5.95456 6.04156 6.54081 6.57959 6.95444 7.31988 7.89862 8.65314 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.004848 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.106461 B = 5774.228325 C = 6179.311875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 N -0.479 5.479 4 C -0.334 4.334 5 H 0.041 0.959 6 C 0.015 3.985 7 N -0.910 5.910 8 Si 0.944 3.056 9 H -0.237 1.237 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.457 3.543 13 O -0.618 6.618 14 C -0.110 4.110 15 C -0.045 4.045 16 C -0.130 4.130 17 C -0.086 4.086 18 C -0.156 4.156 19 C -0.085 4.085 20 C -0.210 4.210 21 C 0.112 3.888 22 O -0.341 6.341 23 C 0.019 3.981 24 H 0.039 0.961 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.280 0.720 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 -11.206 22.853 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.044 4.044 3 N -0.201 5.201 4 C -0.462 4.462 5 H 0.059 0.941 6 C -0.187 4.187 7 N -0.548 5.548 8 Si 0.767 3.233 9 H -0.161 1.161 10 H -0.213 1.213 11 H -0.187 1.187 12 C 0.248 3.752 13 O -0.503 6.503 14 C -0.149 4.149 15 C -0.083 4.083 16 C -0.130 4.130 17 C -0.104 4.104 18 C -0.174 4.174 19 C -0.103 4.103 20 C -0.229 4.229 21 C 0.067 3.933 22 O -0.255 6.255 23 C -0.075 4.075 24 H 0.058 0.942 25 H 0.114 0.886 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.216 -10.608 22.451 25.187 hybrid contribution 0.832 -0.027 -0.598 1.025 sum -3.384 -10.636 21.854 24.539 Atomic orbital electron populations 1.22091 0.93867 1.03413 1.01994 1.22056 0.96830 0.83132 1.02397 1.43955 1.57661 1.13195 1.05267 1.18637 1.38712 0.96611 0.92213 0.94062 1.26104 0.96379 1.02196 0.94055 1.69880 1.41280 1.42626 1.00975 0.85904 0.78856 0.79495 0.79082 1.16140 1.21292 1.18712 1.21374 0.80498 0.87213 0.86106 1.90507 1.51388 1.20914 1.87527 1.21550 1.03794 0.99398 0.90187 1.19939 1.01368 0.96850 0.90137 1.19320 0.94485 1.01629 0.97607 1.21142 0.93998 0.98840 0.96434 1.21362 1.01245 0.99350 0.95448 1.21312 0.92131 0.96797 1.00044 1.21488 0.99619 1.05257 0.96491 1.19127 0.84649 0.96026 0.93524 1.86130 1.21374 1.67453 1.50517 1.23301 0.93231 0.94070 0.96933 0.94179 0.88611 0.91576 0.91910 0.88924 0.91053 0.88899 0.87494 0.91658 0.92971 0.84570 0.83394 0.82926 0.83456 0.87621 0.91376 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.11 71.98 0.73 -4.26 16 2 C 0.08 3.05 4.46 86.38 0.39 3.43 16 3 N -0.48 -24.28 2.18 -635.53 -1.39 -25.66 16 4 C -0.33 -20.43 9.35 84.04 0.79 -19.64 16 5 H 0.04 2.95 7.92 -2.91 -0.02 2.93 16 6 C 0.01 0.86 5.24 84.92 0.45 1.30 16 7 N -0.91 -55.50 13.96 21.66 0.30 -55.19 16 8 Si 0.94 43.20 25.11 68.60 1.72 44.92 16 9 H -0.24 -9.37 6.67 99.48 0.66 -8.70 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.46 22.62 7.57 87.66 0.66 23.29 16 13 O -0.62 -36.53 15.85 -3.08 -0.05 -36.57 16 14 C -0.11 -3.93 4.29 29.85 0.13 -3.80 16 15 C -0.04 -1.56 4.35 29.85 0.13 -1.43 16 16 C -0.13 -3.61 5.15 -19.77 -0.10 -3.71 16 17 C -0.09 -1.93 9.68 22.25 0.22 -1.72 16 18 C -0.16 -2.71 10.04 22.28 0.22 -2.49 16 19 C -0.09 -1.36 10.04 22.25 0.22 -1.14 16 20 C -0.21 -4.00 9.04 22.37 0.20 -3.80 16 21 C 0.11 2.89 6.66 22.51 0.15 3.04 16 22 O -0.34 -9.33 9.64 -92.44 -0.89 -10.22 16 23 C 0.02 0.32 9.81 113.37 1.11 1.43 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.07 1.92 6.38 -2.38 -0.02 1.90 16 27 H 0.06 2.58 3.72 -2.39 -0.01 2.57 16 28 H 0.09 2.99 6.74 -2.38 -0.02 2.97 16 29 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.09 3.12 7.42 -2.39 -0.02 3.10 16 31 H 0.11 3.24 6.35 -2.39 -0.02 3.22 16 32 H 0.06 2.33 8.01 -2.39 -0.02 2.31 16 33 H 0.05 2.07 7.66 -2.38 -0.02 2.06 16 34 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.15 2.03 6.30 -2.91 -0.02 2.01 16 38 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 0.91 7.65 -2.39 -0.02 0.89 16 40 H 0.07 0.93 7.68 -2.39 -0.02 0.91 16 Total: -1.00 -79.58 326.15 5.98 -73.60 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.99 Total: 18.63 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 5.29 Total: -9.50 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -1.09 Total: -80.86 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.94 Total: -46.80 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.72 Total: 44.92 kcal Total: -79.58 5.98 -73.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.835 kcal (2) G-P(sol) polarization free energy of solvation -79.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds