Wall clock time and date at job start Mon Mar 30 2020 01:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46584 * 2 1 4 4 C 1.37092 * 120.00362 * 263.03269 * 3 2 1 5 5 H 1.07999 * 120.00359 * 144.25178 * 4 3 2 6 6 C 1.38947 * 119.99904 * 324.26131 * 4 3 2 7 7 N 1.31408 * 120.00134 * 339.90510 * 6 4 3 8 8 Si 1.86800 * 120.00130 * 159.90249 * 6 4 3 9 9 H 1.48497 * 109.47067 * 59.99935 * 8 6 4 10 10 H 1.48501 * 109.47310 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47337 * 299.99925 * 8 6 4 12 12 C 1.34779 * 119.99686 * 83.03860 * 3 2 1 13 13 O 1.21293 * 119.99850 * 182.91446 * 12 3 2 14 14 C 1.50694 * 120.00448 * 2.91244 * 12 3 2 15 15 H 1.09007 * 109.47048 * 325.00312 * 14 12 3 16 16 C 1.52999 * 109.47482 * 85.00476 * 14 12 3 17 17 O 1.42900 * 109.47204 * 205.00840 * 14 12 3 18 18 C 1.42902 * 113.99957 * 149.99951 * 17 14 12 19 19 C 1.50700 * 109.47031 * 179.97438 * 18 17 14 20 20 C 1.38235 * 120.00109 * 269.72528 * 19 18 17 21 21 C 1.38231 * 119.99996 * 179.76770 * 20 19 18 22 22 C 1.38227 * 120.00216 * 0.50686 * 21 20 19 23 23 C 1.38241 * 119.99925 * 359.74554 * 22 21 20 24 24 C 1.38234 * 119.99998 * 0.02562 * 23 22 21 25 25 H 1.09009 * 109.46736 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47545 * 299.99445 * 1 2 3 27 27 H 1.08994 * 109.47740 * 60.00031 * 1 2 3 28 28 H 1.08998 * 109.47545 * 240.00555 * 2 1 3 29 29 H 1.08997 * 109.47264 * 119.99789 * 2 1 3 30 30 H 0.97001 * 120.00130 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47521 * 185.94980 * 16 14 12 32 32 H 1.09000 * 109.46894 * 305.95012 * 16 14 12 33 33 H 1.09005 * 109.46602 * 65.94871 * 16 14 12 34 34 H 1.09000 * 109.47042 * 299.99612 * 18 17 14 35 35 H 1.08995 * 109.47394 * 59.99779 * 18 17 14 36 36 H 1.08008 * 119.99691 * 359.97438 * 20 19 18 37 37 H 1.08004 * 120.00035 * 180.22982 * 21 20 19 38 38 H 1.08000 * 120.00480 * 179.72550 * 22 21 20 39 39 H 1.08006 * 119.99735 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99870 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3824 1.9797 -1.1784 5 1 2.1902 3.0312 -1.3322 6 6 2.9987 1.2332 -2.1752 7 7 3.5859 0.0961 -1.8765 8 14 2.9927 1.8458 -3.9398 9 1 3.6712 3.1649 -4.0082 10 1 3.7114 0.8748 -4.8035 11 1 1.5912 1.9850 -4.4107 12 6 2.1093 2.0638 1.1587 13 8 2.4631 3.2239 1.1529 14 6 1.7718 1.3855 2.4613 15 1 0.9544 0.6818 2.3034 16 6 2.9998 0.6333 2.9780 17 8 1.3760 2.3675 3.4211 18 6 0.4366 1.8909 4.3867 19 6 0.0919 3.0029 5.3436 20 6 0.8323 3.1755 6.4981 21 6 0.5192 4.1985 7.3735 22 6 -0.5408 5.0423 7.0997 23 6 -1.2845 4.8665 5.9477 24 6 -0.9685 3.8464 5.0699 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0165 -0.4248 -2.5722 31 1 2.7277 0.0574 3.8625 32 1 3.3651 -0.0412 2.2035 33 1 3.7816 1.3478 3.2358 34 1 -0.4675 1.5548 3.8789 35 1 0.8736 1.0591 4.9391 36 1 1.6576 2.5131 6.7145 37 1 1.1000 4.3357 8.2737 38 1 -0.7882 5.8388 7.7858 39 1 -2.1130 5.5256 5.7340 40 1 -1.5498 3.7088 4.1702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:05 Heat of formation + Delta-G solvation = -50.428464 kcal Electronic energy + Delta-G solvation = -21537.572419 eV Core-core repulsion = 18317.767335 eV Total energy + Delta-G solvation = -3219.805084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.44753 -38.82400 -36.92939 -34.88003 -32.48744 -31.85878 -30.90216 -30.20794 -29.47363 -26.03583 -25.29892 -23.24781 -22.57354 -21.95456 -21.27717 -19.05207 -17.19519 -16.71070 -16.33124 -15.83077 -15.51178 -15.17295 -14.82335 -14.36900 -14.17428 -13.74775 -13.40407 -13.31359 -12.99086 -12.76004 -12.55278 -12.37044 -12.13224 -11.81122 -11.75149 -11.35795 -11.20004 -11.05379 -11.01190 -10.86178 -10.65420 -10.36136 -10.28869 -10.09776 -9.38907 -8.92972 -8.91434 -8.83873 -8.19002 -7.46353 -6.32127 -3.95234 1.27732 1.40838 3.20492 3.26099 3.29556 3.57002 3.90135 4.05967 4.33428 4.79697 4.82434 4.97108 5.00813 5.07117 5.17348 5.28829 5.39926 5.43419 5.57049 5.59442 5.64036 5.74742 5.90020 5.96685 6.04111 6.08144 6.12048 6.19993 6.31351 6.42869 6.45356 6.47888 6.61954 6.64711 6.85922 6.98027 7.24053 7.49511 7.60357 8.27989 8.54906 9.21348 9.41353 10.03634 10.72120 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.003895 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.844301 B = 7186.936231 C = 7376.417553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 N -0.440 5.440 4 C -0.305 4.305 5 H 0.091 0.909 6 C 0.036 3.964 7 N -0.873 5.873 8 Si 0.920 3.080 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.464 3.536 13 O -0.562 6.562 14 C 0.072 3.928 15 H 0.072 0.928 16 C -0.163 4.163 17 O -0.352 6.352 18 C 0.097 3.903 19 C -0.081 4.081 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.097 4.097 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.378 -1.030 13.658 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.161 5.161 4 C -0.433 4.433 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.511 5.511 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.251 3.749 13 O -0.444 6.444 14 C 0.010 3.990 15 H 0.089 0.911 16 C -0.221 4.221 17 O -0.270 6.270 18 C 0.020 3.980 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.115 4.115 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.015 -0.408 13.536 15.736 hybrid contribution -0.044 -0.198 -0.830 0.854 sum -8.058 -0.606 12.706 15.058 Atomic orbital electron populations 1.22264 0.98334 1.00390 1.01514 1.21630 0.91554 0.85613 1.04192 1.43451 1.56039 1.11832 1.04773 1.19426 1.37225 0.96428 0.90228 0.89109 1.25353 0.94360 0.96504 1.00575 1.69893 1.32347 1.15114 1.33748 0.86103 0.78508 0.78752 0.81995 1.19719 1.20981 1.19906 1.20086 0.82658 0.88140 0.84056 1.90532 1.50183 1.17250 1.86407 1.22141 0.97154 0.90409 0.89249 0.91066 1.22133 0.98307 1.00495 1.01174 1.88151 1.61154 1.36577 1.41134 1.21375 0.92859 0.93917 0.89877 1.19655 0.95987 0.97532 0.94956 1.21075 0.98561 0.98051 0.94020 1.21112 0.97834 0.95727 0.99715 1.21151 0.95939 0.99250 0.97432 1.21135 1.00186 0.98156 0.94789 1.21116 0.97078 0.94459 0.98859 0.92953 0.94129 0.92242 0.86829 0.93373 0.92190 0.92655 0.90564 0.91395 0.92709 0.92690 0.85945 0.86079 0.86231 0.86029 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.96 37.16 0.37 -2.61 16 2 C 0.09 2.03 5.27 -4.04 -0.02 2.01 16 3 N -0.44 -11.29 2.55 -114.82 -0.29 -11.58 16 4 C -0.31 -8.57 8.97 -14.94 -0.13 -8.70 16 5 H 0.09 2.69 7.70 -52.49 -0.40 2.28 16 6 C 0.04 0.94 4.94 -17.47 -0.09 0.86 16 7 N -0.87 -23.24 11.35 55.50 0.63 -22.61 16 8 Si 0.92 20.65 29.60 -169.99 -5.03 15.62 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.46 11.93 6.79 -10.99 -0.07 11.85 16 13 O -0.56 -16.92 16.51 -12.99 -0.21 -17.14 16 14 C 0.07 1.43 2.29 -27.89 -0.06 1.37 16 15 H 0.07 1.25 5.02 -51.92 -0.26 0.99 16 16 C -0.16 -2.88 9.26 37.16 0.34 -2.54 16 17 O -0.35 -7.03 9.63 -53.77 -0.52 -7.54 16 18 C 0.10 1.43 5.87 36.01 0.21 1.64 16 19 C -0.08 -1.16 5.51 -104.62 -0.58 -1.74 16 20 C -0.10 -1.27 9.70 -39.59 -0.38 -1.65 16 21 C -0.13 -1.42 10.05 -39.59 -0.40 -1.81 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 25 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.04 0.68 6.76 -51.93 -0.35 0.33 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.11 2.69 5.43 -51.93 -0.28 2.40 16 29 H 0.05 0.94 5.62 -51.93 -0.29 0.64 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 0.77 8.02 -51.93 -0.42 0.36 16 32 H 0.08 1.39 7.04 -51.93 -0.37 1.02 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.05 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.05 0.70 7.96 -51.93 -0.41 0.28 16 36 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -32.96 333.96 -8.10 -41.07 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.72 Total: 3.71 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.99 Total: -6.56 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.34 Total: -34.19 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.73 Total: -24.68 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.96 -8.10 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.360 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds