Wall clock time and date at job start Mon Mar 30 2020 01:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46584 * 2 1 4 4 C 1.37092 * 120.00362 * 263.03269 * 3 2 1 5 5 H 1.07999 * 120.00359 * 144.25178 * 4 3 2 6 6 C 1.38947 * 119.99904 * 324.26131 * 4 3 2 7 7 N 1.31408 * 120.00134 * 339.90510 * 6 4 3 8 8 Si 1.86800 * 120.00130 * 159.90249 * 6 4 3 9 9 H 1.48497 * 109.47067 * 59.99935 * 8 6 4 10 10 H 1.48501 * 109.47310 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47337 * 299.99925 * 8 6 4 12 12 C 1.34779 * 119.99686 * 83.03860 * 3 2 1 13 13 O 1.21293 * 119.99850 * 182.91446 * 12 3 2 14 14 C 1.50694 * 120.00448 * 2.91244 * 12 3 2 15 15 H 1.09007 * 109.47048 * 325.00312 * 14 12 3 16 16 C 1.52999 * 109.47482 * 85.00476 * 14 12 3 17 17 O 1.42900 * 109.47204 * 205.00840 * 14 12 3 18 18 C 1.42902 * 113.99957 * 149.99951 * 17 14 12 19 19 C 1.50700 * 109.47031 * 179.97438 * 18 17 14 20 20 C 1.38235 * 120.00109 * 269.72528 * 19 18 17 21 21 C 1.38231 * 119.99996 * 179.76770 * 20 19 18 22 22 C 1.38227 * 120.00216 * 0.50686 * 21 20 19 23 23 C 1.38241 * 119.99925 * 359.74554 * 22 21 20 24 24 C 1.38234 * 119.99998 * 0.02562 * 23 22 21 25 25 H 1.09009 * 109.46736 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47545 * 299.99445 * 1 2 3 27 27 H 1.08994 * 109.47740 * 60.00031 * 1 2 3 28 28 H 1.08998 * 109.47545 * 240.00555 * 2 1 3 29 29 H 1.08997 * 109.47264 * 119.99789 * 2 1 3 30 30 H 0.97001 * 120.00130 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47521 * 185.94980 * 16 14 12 32 32 H 1.09000 * 109.46894 * 305.95012 * 16 14 12 33 33 H 1.09005 * 109.46602 * 65.94871 * 16 14 12 34 34 H 1.09000 * 109.47042 * 299.99612 * 18 17 14 35 35 H 1.08995 * 109.47394 * 59.99779 * 18 17 14 36 36 H 1.08008 * 119.99691 * 359.97438 * 20 19 18 37 37 H 1.08004 * 120.00035 * 180.22982 * 21 20 19 38 38 H 1.08000 * 120.00480 * 179.72550 * 22 21 20 39 39 H 1.08006 * 119.99735 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99870 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3824 1.9797 -1.1784 5 1 2.1902 3.0312 -1.3322 6 6 2.9987 1.2332 -2.1752 7 7 3.5859 0.0961 -1.8765 8 14 2.9927 1.8458 -3.9398 9 1 3.6712 3.1649 -4.0082 10 1 3.7114 0.8748 -4.8035 11 1 1.5912 1.9850 -4.4107 12 6 2.1093 2.0638 1.1587 13 8 2.4631 3.2239 1.1529 14 6 1.7718 1.3855 2.4613 15 1 0.9544 0.6818 2.3034 16 6 2.9998 0.6333 2.9780 17 8 1.3760 2.3675 3.4211 18 6 0.4366 1.8909 4.3867 19 6 0.0919 3.0029 5.3436 20 6 0.8323 3.1755 6.4981 21 6 0.5192 4.1985 7.3735 22 6 -0.5408 5.0423 7.0997 23 6 -1.2845 4.8665 5.9477 24 6 -0.9685 3.8464 5.0699 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0165 -0.4248 -2.5722 31 1 2.7277 0.0574 3.8625 32 1 3.3651 -0.0412 2.2035 33 1 3.7816 1.3478 3.2358 34 1 -0.4675 1.5548 3.8789 35 1 0.8736 1.0591 4.9391 36 1 1.6576 2.5131 6.7145 37 1 1.1000 4.3357 8.2737 38 1 -0.7882 5.8388 7.7858 39 1 -2.1130 5.5256 5.7340 40 1 -1.5498 3.7088 4.1702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:05 Heat of formation + Delta-G solvation = -69.429625 kcal Electronic energy + Delta-G solvation = -21538.396372 eV Core-core repulsion = 18317.767335 eV Total energy + Delta-G solvation = -3220.629036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91189 -40.12490 -38.42144 -36.87287 -34.22843 -33.22458 -31.79695 -31.61084 -31.21290 -27.36456 -27.01796 -24.90664 -23.62488 -23.47040 -22.25278 -20.85712 -18.87984 -18.30410 -17.61488 -17.38103 -16.89540 -16.66399 -16.16846 -15.83539 -15.81563 -15.24488 -14.77817 -14.58790 -14.28635 -14.08853 -13.90978 -13.76206 -13.60266 -13.36890 -13.12907 -12.97619 -12.89614 -12.63874 -12.51476 -12.17177 -12.07884 -11.90869 -11.86745 -11.74518 -10.91694 -10.80714 -10.15893 -9.82480 -9.75062 -9.47655 -8.35618 -6.07836 0.33001 0.49717 1.38707 1.41205 1.51349 1.96852 2.21147 2.51040 2.96206 2.99063 3.36461 3.80033 3.89163 3.95103 4.01041 4.14168 4.18019 4.28713 4.32274 4.36065 4.39210 4.59760 4.64215 4.66946 4.75005 4.76958 4.82941 4.98615 5.06738 5.15086 5.19201 5.28911 5.44072 5.54142 5.55462 5.59416 5.67886 6.06713 6.11258 6.25218 6.57066 7.17303 7.43079 8.04806 8.66715 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.003895 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.844301 B = 7186.936231 C = 7376.417553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.091 3.909 3 N -0.446 5.446 4 C -0.347 4.347 5 H 0.059 0.941 6 C 0.008 3.992 7 N -0.885 5.885 8 Si 0.982 3.018 9 H -0.280 1.280 10 H -0.268 1.268 11 H -0.264 1.264 12 C 0.443 3.557 13 O -0.625 6.625 14 C 0.085 3.915 15 H 0.099 0.901 16 C -0.156 4.156 17 O -0.384 6.384 18 C 0.092 3.908 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.120 4.120 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.276 0.724 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 -2.277 14.844 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.032 4.032 3 N -0.166 5.166 4 C -0.475 4.475 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.522 5.522 8 Si 0.805 3.195 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.189 1.189 12 C 0.232 3.768 13 O -0.511 6.511 14 C 0.024 3.976 15 H 0.116 0.884 16 C -0.214 4.214 17 O -0.303 6.303 18 C 0.016 3.984 19 C -0.108 4.108 20 C -0.130 4.130 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.138 4.138 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.947 -1.716 14.728 17.318 hybrid contribution 0.241 0.213 -1.142 1.186 sum -8.706 -1.503 13.586 16.206 Atomic orbital electron populations 1.22168 0.95374 1.02816 1.01163 1.21792 0.93968 0.83259 1.04187 1.43737 1.55417 1.13161 1.04317 1.19354 1.39834 0.95810 0.92487 0.92305 1.26059 0.93172 0.96498 1.03762 1.69947 1.31648 1.15494 1.35110 0.85186 0.78965 0.78032 0.77295 1.20561 1.19185 1.18884 1.21165 0.81830 0.87723 0.86065 1.90471 1.53058 1.19970 1.87604 1.21939 0.98997 0.90003 0.86654 0.88384 1.22100 0.96707 0.99940 1.02637 1.88113 1.62565 1.37675 1.41974 1.21638 0.92430 0.95034 0.89281 1.19796 0.97039 0.98287 0.95698 1.21330 0.98793 0.98934 0.93989 1.21496 0.98007 0.94971 1.00257 1.21567 0.95226 0.99576 0.97390 1.21458 1.00913 0.97835 0.94778 1.21306 0.97523 0.95426 0.99516 0.89022 0.93167 0.93955 0.88889 0.91164 0.91446 0.88079 0.91360 0.93347 0.91666 0.90172 0.84895 0.83430 0.83279 0.83972 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.96 71.98 0.72 -4.64 16 2 C 0.09 3.85 5.27 86.38 0.46 4.31 16 3 N -0.45 -23.52 2.55 -635.55 -1.62 -25.14 16 4 C -0.35 -20.25 8.97 84.04 0.75 -19.49 16 5 H 0.06 3.72 7.70 -2.91 -0.02 3.70 16 6 C 0.01 0.43 4.94 84.93 0.42 0.85 16 7 N -0.88 -47.06 11.35 21.66 0.25 -46.82 16 8 Si 0.98 42.60 29.60 68.60 2.03 44.63 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 12 C 0.44 23.56 6.79 87.65 0.60 24.15 16 13 O -0.62 -39.78 16.51 14.66 0.24 -39.54 16 14 C 0.08 3.35 2.29 29.85 0.07 3.42 16 15 H 0.10 3.26 5.02 -2.38 -0.01 3.25 16 16 C -0.16 -5.32 9.26 71.98 0.67 -4.65 16 17 O -0.38 -15.35 9.63 -131.25 -1.26 -16.61 16 18 C 0.09 2.62 5.87 71.24 0.42 3.04 16 19 C -0.11 -3.02 5.51 -19.87 -0.11 -3.13 16 20 C -0.11 -2.73 9.70 22.27 0.22 -2.52 16 21 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 22 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 24 C -0.12 -3.19 9.70 22.27 0.22 -2.97 16 25 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.05 1.60 6.76 -2.39 -0.02 1.58 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 4.36 5.43 -2.39 -0.01 4.35 16 29 H 0.07 2.62 5.62 -2.39 -0.01 2.60 16 30 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.10 2.49 8.02 -2.39 -0.02 2.47 16 32 H 0.07 2.41 7.04 -2.39 -0.02 2.40 16 33 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 35 H 0.08 1.83 7.96 -2.39 -0.02 1.81 16 36 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 39 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -75.53 333.96 5.74 -69.78 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 1.02 Total: 22.50 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.09 Total: -8.81 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.38 Total: -71.96 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -1.02 Total: -56.14 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.53 5.74 -69.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.353 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds