Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47179 * 2 1 4 4 C 1.37099 * 119.99894 * 264.33274 * 3 2 1 5 5 H 1.08007 * 119.99580 * 145.54947 * 4 3 2 6 6 C 1.38947 * 120.00206 * 325.54875 * 4 3 2 7 7 N 1.31404 * 120.00377 * 158.58220 * 6 4 3 8 8 Si 1.86802 * 119.99690 * 338.58048 * 6 4 3 9 9 H 1.48509 * 109.46899 * 95.21846 * 8 6 4 10 10 H 1.48493 * 109.47259 * 215.21434 * 8 6 4 11 11 H 1.48500 * 109.47373 * 335.22087 * 8 6 4 12 12 C 1.34782 * 120.00245 * 84.33401 * 3 2 1 13 13 O 1.21290 * 119.99570 * 4.95091 * 12 3 2 14 14 C 1.50699 * 120.00069 * 184.95495 * 12 3 2 15 15 H 1.09004 * 109.46952 * 51.47719 * 14 12 3 16 16 C 1.52992 * 109.47153 * 291.47570 * 14 12 3 17 17 O 1.42896 * 109.47098 * 171.47289 * 14 12 3 18 18 C 1.42902 * 114.00328 * 209.99772 * 17 14 12 19 19 C 1.50696 * 109.47407 * 180.02562 * 18 17 14 20 20 C 1.38235 * 120.00200 * 269.72869 * 19 18 17 21 21 C 1.38235 * 120.00177 * 179.76376 * 20 19 18 22 22 C 1.38236 * 119.99876 * 0.50884 * 21 20 19 23 23 C 1.38236 * 119.99953 * 359.74559 * 22 21 20 24 24 C 1.38236 * 119.99992 * 90.00130 * 19 18 17 25 25 H 1.08996 * 109.47151 * 304.74994 * 1 2 3 26 26 H 1.09000 * 109.47211 * 64.75143 * 1 2 3 27 27 H 1.09000 * 109.47477 * 184.74907 * 1 2 3 28 28 H 1.08994 * 109.47463 * 239.99584 * 2 1 3 29 29 H 1.09005 * 109.46830 * 119.99580 * 2 1 3 30 30 H 0.96993 * 120.00607 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47539 * 176.98616 * 16 14 12 32 32 H 1.09004 * 109.47394 * 296.98565 * 16 14 12 33 33 H 1.09000 * 109.47771 * 56.98525 * 16 14 12 34 34 H 1.09002 * 109.47152 * 300.00558 * 18 17 14 35 35 H 1.09002 * 109.46958 * 60.00089 * 18 17 14 36 36 H 1.08004 * 119.99581 * 359.97438 * 20 19 18 37 37 H 1.07993 * 120.00083 * 180.23193 * 21 20 19 38 38 H 1.07996 * 120.00303 * 179.72373 * 22 21 20 39 39 H 1.07997 * 120.00221 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00057 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3574 1.9884 -1.1815 5 1 2.1812 3.0455 -1.3153 6 6 2.9276 1.2438 -2.2067 7 7 2.8703 1.6790 -3.4453 8 14 3.7756 -0.3761 -1.8243 9 1 2.8205 -1.4950 -2.0278 10 1 4.9412 -0.5500 -2.7277 11 1 4.2390 -0.3714 -0.4135 12 6 2.1343 2.0550 1.1615 13 8 1.9208 1.4908 2.2138 14 6 2.5293 3.5093 1.1528 15 1 1.8829 4.0572 0.4670 16 6 3.9839 3.6400 0.6969 17 8 2.3924 4.0479 2.4692 18 6 2.0724 5.4404 2.4972 19 6 1.9532 5.8999 3.9274 20 6 0.7307 5.8479 4.5706 21 6 0.6224 6.2648 5.8841 22 6 1.7345 6.7435 6.5512 23 6 2.9559 6.8004 5.9064 24 6 3.0653 6.3786 4.5945 25 1 -0.3633 0.5857 0.8443 26 1 -0.3633 0.4383 -0.9295 27 1 -0.3634 -1.0241 0.0851 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2680 1.1591 -4.1610 31 1 4.2532 4.6946 0.6391 32 1 4.6353 3.1373 1.4118 33 1 4.0996 3.1812 -0.2850 34 1 2.8609 6.0045 1.9991 35 1 1.1262 5.6061 1.9819 36 1 -0.1392 5.4783 4.0478 37 1 -0.3319 6.2207 6.3877 38 1 1.6490 7.0734 7.5760 39 1 3.8247 7.1749 6.4274 40 1 4.0196 6.4230 4.0908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = -44.566765 kcal Electronic energy + Delta-G solvation = -21589.500567 eV Core-core repulsion = 18369.949666 eV Total energy + Delta-G solvation = -3219.550902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.45722 -38.98107 -37.04346 -35.00418 -32.40919 -32.11353 -30.90685 -30.87807 -29.18508 -25.96439 -25.04971 -23.74770 -22.55434 -22.00792 -21.22997 -19.05682 -17.36665 -17.00877 -16.33527 -15.81866 -15.53296 -15.22281 -15.03481 -14.34050 -14.16145 -13.75584 -13.45119 -13.36745 -13.02338 -12.80959 -12.71497 -12.33149 -12.20097 -11.96920 -11.69601 -11.50372 -11.38350 -11.08859 -10.96168 -10.88596 -10.70509 -10.50223 -10.11587 -9.79593 -9.35981 -9.14890 -8.89522 -8.81820 -8.39286 -7.86172 -6.54593 -4.10750 1.30209 1.42745 3.01032 3.18782 3.27516 3.57690 3.69171 4.03368 4.09651 4.65284 4.85458 4.86014 4.97605 5.07904 5.20070 5.34822 5.48278 5.56314 5.66680 5.68999 5.72832 5.87220 5.89210 5.99451 6.06354 6.07765 6.11562 6.34717 6.40351 6.45982 6.46701 6.49499 6.62133 6.66942 6.85162 6.95769 7.00196 7.30203 7.60187 7.98336 8.17768 8.89316 9.31305 9.64816 10.55573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.004219 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.867856 B = 6635.741804 C = 7032.857515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.464 5.464 4 C -0.346 4.346 5 H 0.106 0.894 6 C 0.067 3.933 7 N -0.858 5.858 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.261 1.261 12 C 0.484 3.516 13 O -0.579 6.579 14 C 0.090 3.910 15 H 0.078 0.922 16 C -0.169 4.169 17 O -0.357 6.357 18 C 0.098 3.902 19 C -0.080 4.080 20 C -0.097 4.097 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.099 4.099 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.276 0.724 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 8.261 10.430 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.187 5.187 4 C -0.473 4.473 5 H 0.124 0.876 6 C -0.141 4.141 7 N -0.493 5.493 8 Si 0.705 3.295 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.185 1.185 12 C 0.272 3.728 13 O -0.462 6.462 14 C 0.030 3.970 15 H 0.096 0.904 16 C -0.227 4.227 17 O -0.276 6.276 18 C 0.022 3.978 19 C -0.080 4.080 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.291 7.840 10.897 13.486 hybrid contribution 0.429 -0.684 -0.394 0.898 sum -0.862 7.156 10.503 12.738 Atomic orbital electron populations 1.22001 0.96361 1.00775 1.02283 1.21552 0.94569 0.85132 1.01090 1.43707 1.57401 1.11670 1.05936 1.19066 1.41803 0.96875 0.89554 0.87623 1.25259 0.95895 0.98308 0.94598 1.69748 1.40854 1.39782 0.98966 0.86969 0.79488 0.83498 0.79581 1.20133 1.21563 1.18466 1.20035 0.80654 0.88505 0.83592 1.90560 1.54421 1.70004 1.31167 1.21673 0.98014 0.93499 0.83835 0.90409 1.22233 0.94641 1.01394 1.04392 1.88075 1.91133 1.21342 1.27014 1.21346 0.99780 0.84007 0.92711 1.19677 0.93758 0.98865 0.95661 1.21117 0.97480 0.98111 0.94809 1.21124 0.98729 0.99714 0.94756 1.21142 0.93091 0.99937 0.99688 1.21114 0.97648 1.00764 0.94907 1.21090 0.98045 0.97904 0.94674 0.92656 0.92107 0.92948 0.91503 0.91501 0.91398 0.93101 0.92591 0.87962 0.92558 0.92650 0.85879 0.86085 0.86282 0.86117 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.20 37.16 0.38 -2.67 16 2 C 0.10 2.23 4.71 -4.04 -0.02 2.21 16 3 N -0.46 -11.18 2.25 -114.81 -0.26 -11.44 16 4 C -0.35 -8.63 7.23 -14.93 -0.11 -8.73 16 5 H 0.11 2.70 6.73 -52.48 -0.35 2.34 16 6 C 0.07 1.70 5.31 -17.47 -0.09 1.61 16 7 N -0.86 -22.77 13.96 55.50 0.77 -21.99 16 8 Si 0.88 20.12 24.83 -169.99 -4.22 15.90 16 9 H -0.27 -6.07 6.67 56.52 0.38 -5.69 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.48 11.68 7.01 -10.98 -0.08 11.61 16 13 O -0.58 -15.47 16.17 -14.21 -0.23 -15.70 16 14 C 0.09 1.85 2.34 -27.89 -0.07 1.79 16 15 H 0.08 1.51 7.00 -51.93 -0.36 1.15 16 16 C -0.17 -3.20 9.30 37.15 0.35 -2.85 16 17 O -0.36 -7.14 9.52 -54.99 -0.52 -7.66 16 18 C 0.10 1.51 5.87 36.00 0.21 1.73 16 19 C -0.08 -1.15 5.51 -104.63 -0.58 -1.73 16 20 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 21 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 24 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.51 3.07 -51.93 -0.16 1.35 16 29 H 0.07 1.50 7.53 -51.93 -0.39 1.11 16 30 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.05 0.81 7.94 -51.93 -0.41 0.39 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 2.11 5.88 -51.93 -0.31 1.81 16 34 H 0.06 0.77 7.88 -51.93 -0.41 0.36 16 35 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 36 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -30.10 329.86 -7.23 -37.33 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.78 Total: 4.41 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.96 Total: -5.83 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.52 Total: -33.43 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.75 Total: -23.36 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.22 Total: 15.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.10 -7.23 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.234 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds