Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47179 * 2 1 4 4 C 1.37099 * 119.99894 * 264.33274 * 3 2 1 5 5 H 1.08007 * 119.99580 * 145.54947 * 4 3 2 6 6 C 1.38947 * 120.00206 * 325.54875 * 4 3 2 7 7 N 1.31404 * 120.00377 * 158.58220 * 6 4 3 8 8 Si 1.86802 * 119.99690 * 338.58048 * 6 4 3 9 9 H 1.48509 * 109.46899 * 95.21846 * 8 6 4 10 10 H 1.48493 * 109.47259 * 215.21434 * 8 6 4 11 11 H 1.48500 * 109.47373 * 335.22087 * 8 6 4 12 12 C 1.34782 * 120.00245 * 84.33401 * 3 2 1 13 13 O 1.21290 * 119.99570 * 4.95091 * 12 3 2 14 14 C 1.50699 * 120.00069 * 184.95495 * 12 3 2 15 15 H 1.09004 * 109.46952 * 51.47719 * 14 12 3 16 16 C 1.52992 * 109.47153 * 291.47570 * 14 12 3 17 17 O 1.42896 * 109.47098 * 171.47289 * 14 12 3 18 18 C 1.42902 * 114.00328 * 209.99772 * 17 14 12 19 19 C 1.50696 * 109.47407 * 180.02562 * 18 17 14 20 20 C 1.38235 * 120.00200 * 269.72869 * 19 18 17 21 21 C 1.38235 * 120.00177 * 179.76376 * 20 19 18 22 22 C 1.38236 * 119.99876 * 0.50884 * 21 20 19 23 23 C 1.38236 * 119.99953 * 359.74559 * 22 21 20 24 24 C 1.38236 * 119.99992 * 90.00130 * 19 18 17 25 25 H 1.08996 * 109.47151 * 304.74994 * 1 2 3 26 26 H 1.09000 * 109.47211 * 64.75143 * 1 2 3 27 27 H 1.09000 * 109.47477 * 184.74907 * 1 2 3 28 28 H 1.08994 * 109.47463 * 239.99584 * 2 1 3 29 29 H 1.09005 * 109.46830 * 119.99580 * 2 1 3 30 30 H 0.96993 * 120.00607 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47539 * 176.98616 * 16 14 12 32 32 H 1.09004 * 109.47394 * 296.98565 * 16 14 12 33 33 H 1.09000 * 109.47771 * 56.98525 * 16 14 12 34 34 H 1.09002 * 109.47152 * 300.00558 * 18 17 14 35 35 H 1.09002 * 109.46958 * 60.00089 * 18 17 14 36 36 H 1.08004 * 119.99581 * 359.97438 * 20 19 18 37 37 H 1.07993 * 120.00083 * 180.23193 * 21 20 19 38 38 H 1.07996 * 120.00303 * 179.72373 * 22 21 20 39 39 H 1.07997 * 120.00221 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00057 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3574 1.9884 -1.1815 5 1 2.1812 3.0455 -1.3153 6 6 2.9276 1.2438 -2.2067 7 7 2.8703 1.6790 -3.4453 8 14 3.7756 -0.3761 -1.8243 9 1 2.8205 -1.4950 -2.0278 10 1 4.9412 -0.5500 -2.7277 11 1 4.2390 -0.3714 -0.4135 12 6 2.1343 2.0550 1.1615 13 8 1.9208 1.4908 2.2138 14 6 2.5293 3.5093 1.1528 15 1 1.8829 4.0572 0.4670 16 6 3.9839 3.6400 0.6969 17 8 2.3924 4.0479 2.4692 18 6 2.0724 5.4404 2.4972 19 6 1.9532 5.8999 3.9274 20 6 0.7307 5.8479 4.5706 21 6 0.6224 6.2648 5.8841 22 6 1.7345 6.7435 6.5512 23 6 2.9559 6.8004 5.9064 24 6 3.0653 6.3786 4.5945 25 1 -0.3633 0.5857 0.8443 26 1 -0.3633 0.4383 -0.9295 27 1 -0.3634 -1.0241 0.0851 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2680 1.1591 -4.1610 31 1 4.2532 4.6946 0.6391 32 1 4.6353 3.1373 1.4118 33 1 4.0996 3.1812 -0.2850 34 1 2.8609 6.0045 1.9991 35 1 1.1262 5.6061 1.9819 36 1 -0.1392 5.4783 4.0478 37 1 -0.3319 6.2207 6.3877 38 1 1.6490 7.0734 7.5760 39 1 3.8247 7.1749 6.4274 40 1 4.0196 6.4230 4.0908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = -60.807120 kcal Electronic energy + Delta-G solvation = -21590.204802 eV Core-core repulsion = 18369.949666 eV Total energy + Delta-G solvation = -3220.255136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06633 -40.17784 -38.51551 -36.93139 -34.15843 -33.60585 -32.32998 -31.79058 -30.79718 -27.21051 -26.89318 -25.42572 -23.66720 -23.45830 -22.24221 -20.93812 -19.12406 -18.42671 -17.68637 -17.47877 -16.99098 -16.51580 -16.36418 -15.91548 -15.73824 -15.24717 -15.03571 -14.66431 -14.34951 -14.27008 -14.05936 -13.81315 -13.78911 -13.41973 -13.19399 -13.07130 -12.93637 -12.69717 -12.55760 -12.29451 -11.98403 -11.90428 -11.80260 -11.62240 -11.08857 -10.79767 -10.25760 -9.81966 -9.81050 -9.73562 -8.52021 -6.09794 0.33633 0.50290 1.17379 1.32269 1.43014 1.80780 2.14684 2.21520 2.79620 2.94191 3.30945 3.85744 3.89926 3.96477 4.06431 4.15074 4.19144 4.23480 4.29665 4.34254 4.40430 4.41246 4.44383 4.65852 4.76108 4.77641 4.85792 4.90434 4.97163 5.07166 5.15841 5.21320 5.36470 5.44008 5.54886 5.59869 5.69046 5.97878 6.10131 6.18405 6.26008 6.93292 7.37777 7.73641 8.61115 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.004219 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.867856 B = 6635.741804 C = 7032.857515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.088 3.912 3 N -0.470 5.470 4 C -0.340 4.340 5 H 0.095 0.905 6 C 0.037 3.963 7 N -0.889 5.889 8 Si 0.919 3.081 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.473 3.527 13 O -0.610 6.610 14 C 0.096 3.904 15 H 0.085 0.915 16 C -0.159 4.159 17 O -0.380 6.380 18 C 0.094 3.906 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.113 4.113 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.281 0.719 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.120 0.880 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 8.723 11.572 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 N -0.192 5.192 4 C -0.467 4.467 5 H 0.112 0.888 6 C -0.168 4.168 7 N -0.525 5.525 8 Si 0.746 3.254 9 H -0.184 1.184 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.263 3.737 13 O -0.495 6.495 14 C 0.035 3.965 15 H 0.103 0.897 16 C -0.217 4.217 17 O -0.299 6.299 18 C 0.018 3.982 19 C -0.106 4.106 20 C -0.136 4.136 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.131 4.131 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.157 8.303 12.023 14.657 hybrid contribution 0.358 -0.757 -0.658 1.065 sum -0.798 7.546 11.365 13.665 Atomic orbital electron populations 1.21919 0.94148 1.02776 1.01599 1.21732 0.96527 0.84355 1.00812 1.43862 1.57291 1.12318 1.05719 1.18986 1.41552 0.96552 0.89646 0.88751 1.25661 0.96174 1.00562 0.94370 1.69787 1.41924 1.41171 0.99638 0.86289 0.79122 0.81515 0.78504 1.18407 1.21047 1.19862 1.20725 0.79939 0.90039 0.83035 1.90523 1.55830 1.71096 1.32100 1.21563 0.98912 0.91349 0.84649 0.89704 1.22127 0.93486 1.03273 1.02788 1.88041 1.91395 1.24038 1.26463 1.21567 1.00596 0.81853 0.94156 1.19755 0.94842 1.00538 0.95481 1.21292 0.97299 0.99069 0.95983 1.21452 1.00263 0.99038 0.94075 1.21569 0.92493 0.98603 1.01009 1.21489 0.98955 0.99890 0.94314 1.21315 0.97968 0.98160 0.95659 0.93648 0.92441 0.89568 0.91529 0.91886 0.90911 0.89877 0.93221 0.89862 0.90818 0.92179 0.86155 0.83843 0.83184 0.83429 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 10.20 71.98 0.73 -4.83 16 2 C 0.09 3.90 4.71 86.38 0.41 4.30 16 3 N -0.47 -22.66 2.25 -635.54 -1.43 -24.09 16 4 C -0.34 -17.00 7.23 84.04 0.61 -16.39 16 5 H 0.09 4.87 6.73 -2.91 -0.02 4.85 16 6 C 0.04 1.89 5.31 84.93 0.45 2.34 16 7 N -0.89 -46.89 13.96 21.66 0.30 -46.59 16 8 Si 0.92 40.80 24.83 68.60 1.70 42.50 16 9 H -0.26 -10.73 6.67 99.48 0.66 -10.06 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.47 23.07 7.01 87.66 0.61 23.68 16 13 O -0.61 -33.09 16.17 15.84 0.26 -32.83 16 14 C 0.10 3.94 2.34 29.85 0.07 4.01 16 15 H 0.09 3.32 7.00 -2.38 -0.02 3.30 16 16 C -0.16 -5.95 9.30 71.98 0.67 -5.28 16 17 O -0.38 -15.24 9.52 -130.08 -1.24 -16.48 16 18 C 0.09 2.88 5.87 71.23 0.42 3.29 16 19 C -0.11 -3.03 5.51 -19.87 -0.11 -3.14 16 20 C -0.12 -3.16 9.70 22.27 0.22 -2.94 16 21 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 22 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 23 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 24 C -0.11 -2.80 9.70 22.27 0.22 -2.59 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.07 2.93 3.07 -2.39 -0.01 2.92 16 29 H 0.06 2.81 7.53 -2.38 -0.02 2.80 16 30 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.08 2.52 7.94 -2.39 -0.02 2.50 16 32 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 33 H 0.08 3.44 5.88 -2.39 -0.01 3.43 16 34 H 0.07 1.94 7.88 -2.39 -0.02 1.92 16 35 H 0.06 1.73 8.03 -2.39 -0.02 1.71 16 36 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -64.03 329.86 5.54 -58.49 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.98 Total: 23.58 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.97 Total: -4.58 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.13 Total: -70.68 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.98 Total: -49.31 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.70 Total: 42.50 kcal Total: -64.03 5.54 -58.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.318 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds