Wall clock time and date at job start Mon Mar 30 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47053 * 2 1 4 4 C 1.37097 * 119.99964 * 264.75174 * 3 2 1 5 5 H 1.07999 * 120.00049 * 146.16220 * 4 3 2 6 6 C 1.38953 * 119.99812 * 326.16357 * 4 3 2 7 7 N 1.31402 * 120.00337 * 337.68709 * 6 4 3 8 8 Si 1.86801 * 119.99516 * 157.68659 * 6 4 3 9 9 H 1.48495 * 109.47354 * 90.00411 * 8 6 4 10 10 H 1.48509 * 109.46780 * 209.99838 * 8 6 4 11 11 H 1.48492 * 109.47565 * 329.99608 * 8 6 4 12 12 C 1.34776 * 119.99914 * 84.74683 * 3 2 1 13 13 O 1.21290 * 119.99956 * 180.02562 * 12 3 2 14 14 C 1.50704 * 120.00107 * 0.02562 * 12 3 2 15 15 O 1.42894 * 109.46869 * 179.97438 * 14 12 3 16 16 C 1.35909 * 116.99755 * 180.02562 * 15 14 12 17 17 C 1.38744 * 120.05311 * 359.97438 * 16 15 14 18 18 C 1.38125 * 119.94190 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.05595 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.94351 * 179.97438 * 19 18 17 21 21 C 1.38242 * 120.11132 * 0.02562 * 19 18 17 22 22 C 1.38169 * 120.05715 * 359.67633 * 21 19 18 23 23 C 1.50699 * 120.02907 * 180.30036 * 22 21 19 24 24 H 1.08998 * 109.47350 * 60.00148 * 1 2 3 25 25 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47128 * 299.99586 * 1 2 3 27 27 H 1.08997 * 109.46739 * 240.00510 * 2 1 3 28 28 H 1.08998 * 109.47350 * 119.99852 * 2 1 3 29 29 H 0.97001 * 120.00530 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46383 * 59.99791 * 14 12 3 31 31 H 1.08996 * 109.47170 * 299.99862 * 14 12 3 32 32 H 1.07996 * 120.03147 * 0.02569 * 17 16 15 33 33 H 1.08003 * 119.97245 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46792 * 90.00266 * 20 19 18 35 35 H 1.09000 * 109.47202 * 210.00121 * 20 19 18 36 36 H 1.09001 * 109.47696 * 330.00267 * 20 19 18 37 37 H 1.08006 * 119.97286 * 179.97438 * 21 19 18 38 38 H 1.08995 * 109.47176 * 270.31479 * 23 22 21 39 39 H 1.08995 * 109.47466 * 30.32244 * 23 22 21 40 40 H 1.09005 * 109.46797 * 150.31989 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1814 3.0506 -1.3089 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1089 -1.9595 8 14 2.7824 1.8631 -3.9772 9 1 3.9646 2.7068 -4.2867 10 1 2.7441 0.7049 -4.9060 11 1 1.5446 2.6675 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1959 1.1623 14 6 1.7790 1.3814 2.4620 15 8 1.9952 2.2899 3.5436 16 6 1.7147 1.8381 4.7943 17 6 1.2405 0.5470 4.9766 18 6 0.9557 0.0904 6.2487 19 6 1.1422 0.9190 7.3399 20 6 0.8300 0.4184 8.7266 21 6 1.6135 2.2062 7.1608 22 6 1.9058 2.6657 5.8909 23 6 2.4260 4.0667 5.6970 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8896 -0.4112 -2.6824 30 1 2.4011 0.4971 2.6007 31 1 0.7297 1.0874 2.4383 32 1 1.0943 -0.1004 4.1247 33 1 0.5869 -0.9147 6.3912 34 1 1.7197 -0.0433 9.1550 35 1 0.5171 1.2540 9.3527 36 1 0.0276 -0.3176 8.6753 37 1 1.7580 2.8517 8.0146 38 1 1.5878 4.7496 5.5587 39 1 2.9980 4.3667 6.5750 40 1 3.0685 4.0971 4.8170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:12 Heat of formation + Delta-G solvation = -51.255910 kcal Electronic energy + Delta-G solvation = -21412.666949 eV Core-core repulsion = 18192.825984 eV Total energy + Delta-G solvation = -3219.840965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16389 -38.63332 -37.17485 -34.98994 -33.12658 -32.13077 -31.49144 -29.56042 -28.38214 -27.12386 -25.90834 -24.64824 -22.49412 -21.92788 -20.55941 -19.12085 -17.86942 -16.82782 -16.16896 -15.82437 -15.55606 -14.94366 -14.78212 -14.28933 -14.03101 -13.97022 -13.47347 -13.18272 -13.09016 -13.00516 -12.83182 -12.49509 -12.22056 -11.87533 -11.85821 -11.76985 -11.40743 -11.21556 -11.13387 -11.02764 -10.68827 -10.64456 -10.39266 -10.30611 -10.14779 -9.01629 -8.73478 -8.45254 -7.79964 -7.57640 -6.39977 -4.01018 1.40397 1.52339 3.13758 3.21817 3.25535 3.39024 3.76183 3.81375 4.15783 4.77467 4.85153 4.87545 4.94983 5.01254 5.22067 5.32648 5.37314 5.51576 5.52693 5.55650 5.65639 5.71439 5.76976 5.86794 5.87134 5.90094 6.00170 6.12965 6.23458 6.35572 6.40724 6.44988 6.59766 6.65408 6.80006 6.92297 7.17472 7.54036 7.65533 8.16733 8.44092 9.10906 9.31211 9.90503 10.63973 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.003910 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.174816 B = 7160.144817 C = 7728.547553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.435 5.435 4 C -0.307 4.307 5 H 0.094 0.906 6 C 0.036 3.964 7 N -0.868 5.868 8 Si 0.920 3.080 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.458 3.542 13 O -0.561 6.561 14 C 0.047 3.953 15 O -0.283 6.283 16 C 0.132 3.868 17 C -0.206 4.206 18 C -0.086 4.086 19 C -0.134 4.134 20 C -0.105 4.105 21 C -0.085 4.085 22 C -0.115 4.115 23 C -0.106 4.106 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.118 0.882 28 H 0.046 0.954 29 H 0.269 0.731 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 -3.420 14.616 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.156 5.156 4 C -0.434 4.434 5 H 0.112 0.888 6 C -0.168 4.168 7 N -0.506 5.506 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.244 3.756 13 O -0.443 6.443 14 C -0.031 4.031 15 O -0.195 6.195 16 C 0.085 3.915 17 C -0.225 4.225 18 C -0.104 4.104 19 C -0.134 4.134 20 C -0.162 4.162 21 C -0.103 4.103 22 C -0.115 4.115 23 C -0.163 4.163 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.135 0.865 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.620 -2.802 14.418 15.726 hybrid contribution -0.129 -0.363 -0.916 0.993 sum -5.748 -3.165 13.503 15.013 Atomic orbital electron populations 1.22231 0.98003 1.00547 1.01651 1.21674 0.91895 0.85354 1.04357 1.43438 1.55935 1.11917 1.04297 1.19476 1.40079 0.95679 0.88212 0.88788 1.25351 0.94305 0.96478 1.00670 1.69911 1.32377 1.15253 1.33093 0.86041 0.79167 0.78394 0.81781 1.20190 1.20739 1.19308 1.19796 0.83498 0.88382 0.83891 1.90559 1.49211 1.18251 1.86252 1.22738 1.01263 0.92678 0.86448 1.86193 1.81143 1.40437 1.11730 1.19021 0.94889 0.92349 0.85204 1.21290 1.06691 0.95798 0.98685 1.20751 0.99028 0.99105 0.91497 1.19729 1.03468 0.94614 0.95573 1.20670 1.01362 1.01067 0.93081 1.20697 0.98761 0.95241 0.95583 1.19275 1.04315 0.97115 0.90842 1.20618 1.01088 0.91885 1.02700 0.92108 0.92834 0.94063 0.86476 0.93563 0.92091 0.90362 0.90619 0.85352 0.86116 0.91711 0.91944 0.91950 0.85753 0.91472 0.92064 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.15 37.16 0.38 -2.51 16 2 C 0.09 1.93 5.44 -4.04 -0.02 1.90 16 3 N -0.43 -10.98 2.56 -114.81 -0.29 -11.27 16 4 C -0.31 -8.47 8.98 -14.93 -0.13 -8.60 16 5 H 0.09 2.72 7.70 -52.49 -0.40 2.32 16 6 C 0.04 0.94 4.92 -17.47 -0.09 0.85 16 7 N -0.87 -22.92 11.33 55.50 0.63 -22.29 16 8 Si 0.92 20.28 29.61 -169.99 -5.03 15.25 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.46 11.52 7.67 -10.98 -0.08 11.44 16 13 O -0.56 -16.38 16.32 -14.36 -0.23 -16.61 16 14 C 0.05 0.93 3.83 36.01 0.14 1.07 16 15 O -0.28 -5.74 8.71 -39.36 -0.34 -6.08 16 16 C 0.13 2.24 6.66 -39.22 -0.26 1.98 16 17 C -0.21 -3.00 9.04 -39.44 -0.36 -3.36 16 18 C -0.09 -1.07 9.69 -39.61 -0.38 -1.45 16 19 C -0.13 -1.58 5.88 -104.60 -0.62 -2.20 16 20 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 21 C -0.08 -1.06 9.35 -39.61 -0.37 -1.44 16 22 C -0.11 -1.73 5.89 -104.47 -0.62 -2.35 16 23 C -0.11 -1.49 9.79 36.01 0.35 -1.14 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.67 6.60 -51.93 -0.34 0.33 16 27 H 0.12 2.73 5.34 -51.93 -0.28 2.45 16 28 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.08 1.41 6.93 -51.93 -0.36 1.05 16 31 H 0.08 1.30 6.06 -51.93 -0.31 0.99 16 32 H 0.13 1.72 6.30 -52.49 -0.33 1.39 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.08 1.26 7.53 -51.93 -0.39 0.87 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -31.69 331.51 -7.68 -39.37 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.70 Total: 2.99 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.70 Total: -6.34 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.34 Total: -33.56 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.58 Total: -22.70 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.69 -7.68 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.887 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds