Wall clock time and date at job start Mon Mar 30 2020 01:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47053 * 2 1 4 4 C 1.37097 * 119.99964 * 264.75174 * 3 2 1 5 5 H 1.07999 * 120.00049 * 146.16220 * 4 3 2 6 6 C 1.38953 * 119.99812 * 326.16357 * 4 3 2 7 7 N 1.31402 * 120.00337 * 337.68709 * 6 4 3 8 8 Si 1.86801 * 119.99516 * 157.68659 * 6 4 3 9 9 H 1.48495 * 109.47354 * 90.00411 * 8 6 4 10 10 H 1.48509 * 109.46780 * 209.99838 * 8 6 4 11 11 H 1.48492 * 109.47565 * 329.99608 * 8 6 4 12 12 C 1.34776 * 119.99914 * 84.74683 * 3 2 1 13 13 O 1.21290 * 119.99956 * 180.02562 * 12 3 2 14 14 C 1.50704 * 120.00107 * 0.02562 * 12 3 2 15 15 O 1.42894 * 109.46869 * 179.97438 * 14 12 3 16 16 C 1.35909 * 116.99755 * 180.02562 * 15 14 12 17 17 C 1.38744 * 120.05311 * 359.97438 * 16 15 14 18 18 C 1.38125 * 119.94190 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.05595 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.94351 * 179.97438 * 19 18 17 21 21 C 1.38242 * 120.11132 * 0.02562 * 19 18 17 22 22 C 1.38169 * 120.05715 * 359.67633 * 21 19 18 23 23 C 1.50699 * 120.02907 * 180.30036 * 22 21 19 24 24 H 1.08998 * 109.47350 * 60.00148 * 1 2 3 25 25 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47128 * 299.99586 * 1 2 3 27 27 H 1.08997 * 109.46739 * 240.00510 * 2 1 3 28 28 H 1.08998 * 109.47350 * 119.99852 * 2 1 3 29 29 H 0.97001 * 120.00530 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46383 * 59.99791 * 14 12 3 31 31 H 1.08996 * 109.47170 * 299.99862 * 14 12 3 32 32 H 1.07996 * 120.03147 * 0.02569 * 17 16 15 33 33 H 1.08003 * 119.97245 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46792 * 90.00266 * 20 19 18 35 35 H 1.09000 * 109.47202 * 210.00121 * 20 19 18 36 36 H 1.09001 * 109.47696 * 330.00267 * 20 19 18 37 37 H 1.08006 * 119.97286 * 179.97438 * 21 19 18 38 38 H 1.08995 * 109.47176 * 270.31479 * 23 22 21 39 39 H 1.08995 * 109.47466 * 30.32244 * 23 22 21 40 40 H 1.09005 * 109.46797 * 150.31989 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1814 3.0506 -1.3089 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1089 -1.9595 8 14 2.7824 1.8631 -3.9772 9 1 3.9646 2.7068 -4.2867 10 1 2.7441 0.7049 -4.9060 11 1 1.5446 2.6675 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1959 1.1623 14 6 1.7790 1.3814 2.4620 15 8 1.9952 2.2899 3.5436 16 6 1.7147 1.8381 4.7943 17 6 1.2405 0.5470 4.9766 18 6 0.9557 0.0904 6.2487 19 6 1.1422 0.9190 7.3399 20 6 0.8300 0.4184 8.7266 21 6 1.6135 2.2062 7.1608 22 6 1.9058 2.6657 5.8909 23 6 2.4260 4.0667 5.6970 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8896 -0.4112 -2.6824 30 1 2.4011 0.4971 2.6007 31 1 0.7297 1.0874 2.4383 32 1 1.0943 -0.1004 4.1247 33 1 0.5869 -0.9147 6.3912 34 1 1.7197 -0.0433 9.1550 35 1 0.5171 1.2540 9.3527 36 1 0.0276 -0.3176 8.6753 37 1 1.7580 2.8517 8.0146 38 1 1.5878 4.7496 5.5587 39 1 2.9980 4.3667 6.5750 40 1 3.0685 4.0971 4.8170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:11 Heat of formation + Delta-G solvation = -68.732598 kcal Electronic energy + Delta-G solvation = -21413.424795 eV Core-core repulsion = 18192.825984 eV Total energy + Delta-G solvation = -3220.598811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43935 -40.32868 -38.50378 -36.94119 -34.25762 -34.00511 -32.47653 -31.27029 -29.96747 -28.11081 -27.09025 -26.37756 -24.07987 -23.17133 -21.60457 -20.87834 -19.22229 -18.73063 -17.67924 -17.41587 -17.15513 -16.56407 -16.06089 -15.69618 -15.46357 -15.19547 -14.77049 -14.66062 -14.46456 -14.08509 -13.96598 -13.71802 -13.64385 -13.49148 -13.31130 -12.90183 -12.77351 -12.72957 -12.66936 -12.30223 -12.20231 -12.10223 -11.92873 -11.73304 -11.66363 -10.96024 -10.44525 -9.75445 -9.55816 -8.91714 -8.40508 -6.10587 0.38123 0.46363 1.34937 1.40762 1.53175 1.86438 1.93036 2.35279 2.76665 2.95016 3.14557 3.71939 3.84361 3.91242 3.95919 4.07870 4.10209 4.32927 4.38423 4.39497 4.57641 4.57806 4.69986 4.76974 4.78565 4.81584 4.94120 4.98110 5.02735 5.17905 5.27489 5.35341 5.40243 5.41506 5.52185 5.52761 5.69511 5.91178 6.12700 6.38019 6.52901 7.09995 7.34621 7.94287 8.62094 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.003910 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.174816 B = 7160.144817 C = 7728.547553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.087 3.913 3 N -0.442 5.442 4 C -0.347 4.347 5 H 0.065 0.935 6 C 0.008 3.992 7 N -0.883 5.883 8 Si 0.984 3.016 9 H -0.279 1.279 10 H -0.263 1.263 11 H -0.267 1.267 12 C 0.438 3.562 13 O -0.619 6.619 14 C 0.066 3.934 15 O -0.317 6.317 16 C 0.090 3.910 17 C -0.211 4.211 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.085 4.085 22 C -0.133 4.133 23 C -0.103 4.103 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.277 0.723 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -5.518 16.377 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.035 4.035 3 N -0.162 5.162 4 C -0.475 4.475 5 H 0.082 0.918 6 C -0.196 4.196 7 N -0.521 5.521 8 Si 0.807 3.193 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.192 1.192 12 C 0.227 3.773 13 O -0.505 6.505 14 C -0.012 4.012 15 O -0.231 6.231 16 C 0.045 3.955 17 C -0.230 4.230 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.160 4.160 21 C -0.103 4.103 22 C -0.134 4.134 23 C -0.160 4.160 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.170 0.830 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.867 -4.957 16.194 18.275 hybrid contribution 0.281 0.242 -1.344 1.394 sum -6.586 -4.716 14.849 16.915 Atomic orbital electron populations 1.22130 0.94952 1.02895 1.01384 1.21846 0.94399 0.82972 1.04325 1.43729 1.55358 1.13250 1.03842 1.19430 1.42612 0.95118 0.90346 0.91758 1.26090 0.93105 0.96484 1.03883 1.69965 1.31808 1.15757 1.34537 0.85102 0.78825 0.78366 0.77037 1.20448 1.18689 1.19170 1.20729 0.82804 0.88006 0.85765 1.90501 1.51845 1.20791 1.87402 1.22442 1.02817 0.91964 0.83956 1.86133 1.82478 1.41346 1.13097 1.19388 0.97772 0.94186 0.84127 1.21477 1.06426 0.94889 1.00182 1.21142 0.98290 1.00521 0.90689 1.20225 1.01223 0.94018 0.97247 1.20749 1.02400 1.01982 0.90911 1.21035 0.97970 0.96154 0.95157 1.19572 1.04930 0.97271 0.91611 1.20583 1.00862 0.92163 1.02365 0.93751 0.89056 0.92982 0.88551 0.91371 0.91312 0.88784 0.88031 0.84535 0.83197 0.90524 0.90603 0.90559 0.83006 0.91344 0.89258 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.15 71.98 0.73 -4.45 16 2 C 0.09 3.66 5.44 86.38 0.47 4.13 16 3 N -0.44 -23.03 2.56 -635.53 -1.63 -24.65 16 4 C -0.35 -19.99 8.98 84.04 0.75 -19.24 16 5 H 0.06 3.99 7.70 -2.91 -0.02 3.97 16 6 C 0.01 0.40 4.92 84.93 0.42 0.82 16 7 N -0.88 -46.80 11.33 21.66 0.25 -46.56 16 8 Si 0.98 41.95 29.61 68.60 2.03 43.98 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 C 0.44 23.07 7.67 87.66 0.67 23.75 16 13 O -0.62 -38.65 16.32 15.98 0.26 -38.39 16 14 C 0.07 2.65 3.83 71.24 0.27 2.93 16 15 O -0.32 -13.40 8.71 -73.48 -0.64 -14.04 16 16 C 0.09 3.08 6.66 22.50 0.15 3.23 16 17 C -0.21 -5.85 9.04 22.36 0.20 -5.65 16 18 C -0.09 -1.94 9.69 22.25 0.22 -1.72 16 19 C -0.13 -2.58 5.88 -19.85 -0.12 -2.70 16 20 C -0.10 -1.31 10.01 71.24 0.71 -0.60 16 21 C -0.09 -1.94 9.35 22.25 0.21 -1.73 16 22 C -0.13 -3.98 5.89 -19.77 -0.12 -4.10 16 23 C -0.10 -2.97 9.79 71.24 0.70 -2.27 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.05 1.61 6.60 -2.39 -0.02 1.59 16 27 H 0.10 4.48 5.34 -2.39 -0.01 4.46 16 28 H 0.07 2.50 6.66 -2.39 -0.02 2.48 16 29 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.09 3.38 6.93 -2.39 -0.02 3.36 16 31 H 0.10 3.43 6.06 -2.39 -0.01 3.42 16 32 H 0.14 3.41 6.30 -2.91 -0.02 3.39 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 36 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 37 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 40 H 0.04 1.50 7.53 -2.38 -0.02 1.48 16 Total: -1.00 -73.44 331.51 6.58 -66.86 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 1.03 Total: 20.42 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.27 Total: -7.62 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.38 Total: -71.21 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.38 Total: -52.43 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -73.44 6.58 -66.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.873 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds