Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47515 * 2 1 4 4 C 1.37094 * 119.99717 * 262.98079 * 3 2 1 5 5 H 1.08008 * 119.99299 * 142.21481 * 4 3 2 6 6 C 1.38948 * 120.00589 * 322.21359 * 4 3 2 7 7 N 1.31408 * 120.00259 * 157.12829 * 6 4 3 8 8 Si 1.86798 * 119.99523 * 337.13116 * 6 4 3 9 9 H 1.48502 * 109.47401 * 95.20676 * 8 6 4 10 10 H 1.48508 * 109.47007 * 215.20470 * 8 6 4 11 11 H 1.48499 * 109.47364 * 335.20005 * 8 6 4 12 12 C 1.34779 * 119.99765 * 82.97897 * 3 2 1 13 13 O 1.21289 * 119.99728 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00301 * 0.02562 * 12 3 2 15 15 O 1.42894 * 109.47391 * 179.97438 * 14 12 3 16 16 C 1.35900 * 117.00569 * 179.97438 * 15 14 12 17 17 C 1.38734 * 120.04852 * 359.72391 * 16 15 14 18 18 C 1.38145 * 119.93748 * 179.76891 * 17 16 15 19 19 C 1.50708 * 119.96953 * 180.25219 * 18 17 16 20 20 C 1.38267 * 120.05946 * 0.50796 * 18 17 16 21 21 C 1.38266 * 120.11013 * 359.74940 * 20 18 17 22 22 C 1.50700 * 119.97260 * 180.02562 * 21 20 18 23 23 C 1.38149 * 120.05420 * 359.97438 * 21 20 18 24 24 H 1.09000 * 109.47123 * 300.00327 * 1 2 3 25 25 H 1.09002 * 109.46757 * 59.99974 * 1 2 3 26 26 H 1.08992 * 109.47454 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47123 * 239.99672 * 2 1 3 28 28 H 1.09002 * 109.46757 * 120.00026 * 2 1 3 29 29 H 0.96998 * 119.99918 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47088 * 59.99544 * 14 12 3 31 31 H 1.09000 * 109.47169 * 300.00134 * 14 12 3 32 32 H 1.07994 * 120.03135 * 0.02562 * 17 16 15 33 33 H 1.08990 * 109.47056 * 270.25416 * 19 18 17 34 34 H 1.08999 * 109.46846 * 30.26135 * 19 18 17 35 35 H 1.09005 * 109.46631 * 150.25456 * 19 18 17 36 36 H 1.08001 * 119.94257 * 179.72193 * 20 18 17 37 37 H 1.08995 * 109.46759 * 269.97696 * 22 21 20 38 38 H 1.09002 * 109.47078 * 29.97424 * 22 21 20 39 39 H 1.09000 * 109.46796 * 149.97492 * 22 21 20 40 40 H 1.07996 * 120.02458 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3837 1.9790 -1.1784 5 1 2.1622 3.0228 -1.3457 6 6 3.0389 1.2423 -2.1574 7 7 2.9962 1.6318 -3.4117 8 14 3.9805 -0.3020 -1.6905 9 1 3.1112 -1.4900 -1.8858 10 1 5.1865 -0.4248 -2.5484 11 1 4.3927 -0.2189 -0.2663 12 6 2.1086 2.0641 1.1585 13 8 2.5134 3.2074 1.1585 14 6 1.7075 1.4067 2.4539 15 8 1.8924 2.3262 3.5319 16 6 1.5745 1.8877 4.7784 17 6 1.0891 0.6007 4.9593 18 6 0.7712 0.1558 6.2279 19 6 0.2492 -1.2441 6.4259 20 6 0.9265 0.9953 7.3154 21 6 1.4051 2.2802 7.1371 22 6 1.5737 3.1925 8.3247 23 6 1.7298 2.7281 5.8712 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.4533 1.1172 -4.0952 30 1 2.3250 0.5240 2.6198 31 1 0.6593 1.1123 2.4026 32 1 0.9638 -0.0540 4.1096 33 1 -0.8379 -1.2409 6.3479 34 1 0.6665 -1.8990 5.6610 35 1 0.5418 -1.6048 7.4120 36 1 0.6732 0.6470 8.3058 37 1 0.6530 3.7533 8.4855 38 1 1.7964 2.5980 9.2107 39 1 2.3935 3.8858 8.1367 40 1 2.1031 3.7319 5.7323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = -44.202907 kcal Electronic energy + Delta-G solvation = -21400.274576 eV Core-core repulsion = 18180.739453 eV Total energy + Delta-G solvation = -3219.535123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24272 -38.89177 -37.40412 -35.20777 -33.62953 -32.40245 -31.04381 -29.84108 -28.49779 -27.30787 -26.68924 -24.48481 -23.02120 -21.71604 -20.89838 -19.04469 -17.62640 -16.94321 -16.31527 -16.06448 -15.95331 -15.60994 -15.27238 -14.24603 -14.05740 -13.78554 -13.66290 -13.36844 -13.35438 -13.07720 -12.84617 -12.67244 -12.49384 -12.40996 -12.25362 -11.89207 -11.60442 -11.49166 -11.46824 -11.12933 -10.83156 -10.79822 -10.56607 -10.18931 -9.92013 -9.14056 -8.65750 -8.58076 -8.07283 -7.84360 -6.45728 -4.02849 1.29034 1.47157 2.97379 3.16894 3.17378 3.22712 3.58428 3.71508 4.09530 4.43537 4.64949 4.71544 4.88377 5.01331 5.15040 5.20201 5.23246 5.30131 5.31019 5.39575 5.42748 5.48967 5.51534 5.54289 5.64754 5.72203 5.79455 5.83693 5.87171 6.10918 6.12629 6.31329 6.36024 6.47772 6.57715 6.64845 6.80825 7.42953 7.59904 8.20353 8.43957 8.88885 9.23401 9.66423 10.65996 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.004268 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.313798 B = 6558.231362 C = 7078.406731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 N -0.460 5.460 4 C -0.316 4.316 5 H 0.107 0.893 6 C 0.063 3.937 7 N -0.859 5.859 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.466 3.534 13 O -0.542 6.542 14 C 0.044 3.956 15 O -0.285 6.285 16 C 0.145 3.855 17 C -0.220 4.220 18 C -0.045 4.045 19 C -0.115 4.115 20 C -0.167 4.167 21 C -0.046 4.046 22 C -0.113 4.113 23 C -0.160 4.160 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.275 0.725 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 -7.493 19.070 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.041 4.041 3 N -0.184 5.184 4 C -0.442 4.442 5 H 0.124 0.876 6 C -0.143 4.143 7 N -0.495 5.495 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.188 1.188 12 C 0.252 3.748 13 O -0.421 6.421 14 C -0.035 4.035 15 O -0.197 6.197 16 C 0.099 3.901 17 C -0.239 4.239 18 C -0.045 4.045 19 C -0.171 4.171 20 C -0.186 4.186 21 C -0.046 4.046 22 C -0.170 4.170 23 C -0.179 4.179 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.441 -6.726 18.773 20.670 hybrid contribution 0.450 -1.242 -0.095 1.324 sum -4.991 -7.968 18.678 20.911 Atomic orbital electron populations 1.22165 0.96076 1.01239 1.02808 1.21874 0.94845 0.85638 1.01788 1.43663 1.57499 1.11528 1.05729 1.19023 1.37404 0.98769 0.89030 0.87564 1.25343 0.96077 0.98181 0.94696 1.69754 1.39839 1.40151 0.99718 0.87036 0.80496 0.82776 0.79833 1.20059 1.21080 1.18807 1.19736 0.83196 0.88305 0.83529 1.90604 1.47951 1.17783 1.85790 1.22778 1.01717 0.92472 0.86534 1.86210 1.80734 1.40364 1.12360 1.19135 0.93369 0.92433 0.85208 1.21152 1.08373 0.96200 0.98176 1.19647 0.96445 0.95942 0.92450 1.20806 1.01160 0.92647 1.02510 1.20727 1.05549 0.93957 0.98343 1.19641 0.96435 0.94540 0.94008 1.20789 1.02447 0.98535 0.95184 1.20293 1.07096 1.00513 0.89972 0.93109 0.91123 0.92378 0.90194 0.92412 0.91459 0.90319 0.90116 0.85488 0.91020 0.91466 0.91498 0.86265 0.90989 0.91489 0.91295 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.11 37.16 0.38 -2.26 16 2 C 0.08 1.58 4.46 -4.04 -0.02 1.56 16 3 N -0.46 -11.09 2.18 -114.81 -0.25 -11.34 16 4 C -0.32 -8.90 9.35 -14.94 -0.14 -9.04 16 5 H 0.11 3.38 7.92 -52.48 -0.42 2.96 16 6 C 0.06 1.73 5.24 -17.47 -0.09 1.64 16 7 N -0.86 -24.51 13.96 55.50 0.77 -23.74 16 8 Si 0.87 20.15 25.11 -169.99 -4.27 15.88 16 9 H -0.27 -5.79 6.67 56.52 0.38 -5.42 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.47 11.20 7.65 -10.99 -0.08 11.11 16 13 O -0.54 -15.47 16.37 -14.36 -0.24 -15.71 16 14 C 0.04 0.80 3.83 36.00 0.14 0.94 16 15 O -0.29 -5.56 9.67 -39.34 -0.38 -5.94 16 16 C 0.15 2.34 6.69 -39.22 -0.26 2.08 16 17 C -0.22 -3.02 8.69 -39.43 -0.34 -3.37 16 18 C -0.04 -0.52 5.88 -104.64 -0.62 -1.14 16 19 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 20 C -0.17 -1.88 9.35 -39.56 -0.37 -2.25 16 21 C -0.05 -0.55 5.88 -104.64 -0.62 -1.16 16 22 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 23 C -0.16 -2.31 9.64 -39.43 -0.38 -2.69 16 24 H 0.05 0.75 6.39 -51.93 -0.33 0.42 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.64 3.72 -51.93 -0.19 1.44 16 28 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 29 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.08 1.27 6.96 -51.93 -0.36 0.91 16 31 H 0.08 1.27 5.86 -51.93 -0.30 0.96 16 32 H 0.13 1.57 6.30 -52.49 -0.33 1.24 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -33.04 328.17 -6.76 -39.80 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.66 Total: 1.91 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.68 Total: -5.81 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.52 Total: -35.08 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.62 Total: -21.65 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.27 Total: 15.88 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.04 -6.76 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.404 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds