Wall clock time and date at job start Mon Mar 30 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47024 * 2 1 4 4 C 1.37099 * 119.99505 * 264.76741 * 3 2 1 5 5 H 1.08003 * 120.00001 * 138.85481 * 4 3 2 6 6 C 1.38945 * 120.00189 * 318.85193 * 4 3 2 7 7 N 1.31410 * 120.00284 * 341.83409 * 6 4 3 8 8 Si 1.86806 * 120.00135 * 161.83380 * 6 4 3 9 9 H 1.48502 * 109.46943 * 60.00205 * 8 6 4 10 10 H 1.48498 * 109.46906 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47088 * 299.99980 * 8 6 4 12 12 C 1.34771 * 120.00273 * 84.76887 * 3 2 1 13 13 O 1.21294 * 119.99842 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00053 * 359.97438 * 12 3 2 15 15 O 1.42908 * 109.47124 * 180.02562 * 14 12 3 16 16 C 1.35896 * 116.99656 * 179.97438 * 15 14 12 17 17 C 1.38732 * 120.05893 * 270.27194 * 16 15 14 18 18 C 1.50699 * 120.02559 * 0.02562 * 17 16 15 19 19 C 1.38139 * 119.94574 * 180.25586 * 17 16 15 20 20 C 1.38271 * 120.05473 * 359.45413 * 19 17 16 21 21 C 1.38263 * 120.11068 * 0.29339 * 20 19 17 22 22 C 1.38145 * 120.05502 * 359.97438 * 21 20 19 23 23 C 1.50702 * 120.02412 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47268 * 60.00272 * 1 2 3 25 25 H 1.09006 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47429 * 300.00566 * 1 2 3 27 27 H 1.08993 * 109.47280 * 239.99363 * 2 1 3 28 28 H 1.09003 * 109.46578 * 119.99809 * 2 1 3 29 29 H 0.96999 * 120.00765 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47001 * 60.00018 * 14 12 3 31 31 H 1.08999 * 109.46684 * 299.99714 * 14 12 3 32 32 H 1.09000 * 109.47397 * 270.25179 * 18 17 16 33 33 H 1.08999 * 109.47744 * 30.25744 * 18 17 16 34 34 H 1.08998 * 109.47043 * 150.25367 * 18 17 16 35 35 H 1.07998 * 119.97539 * 179.72698 * 19 17 16 36 36 H 1.07998 * 119.94138 * 180.27644 * 20 19 17 37 37 H 1.07996 * 119.96900 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47072 * 90.00509 * 23 22 21 39 39 H 1.09001 * 109.46959 * 209.99850 * 23 22 21 40 40 H 1.08997 * 109.47447 * 329.99862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9913 -1.1824 5 1 2.0743 3.0217 -1.3536 6 6 3.0371 1.2841 -2.1605 7 7 3.6791 0.1816 -1.8451 8 14 3.0500 1.9003 -3.9240 9 1 3.6537 3.2563 -3.9701 10 1 3.8481 0.9736 -4.7662 11 1 1.6579 1.9604 -4.4375 12 6 2.1426 2.0521 1.1623 13 8 2.5474 3.1955 1.1622 14 6 1.7787 1.3816 2.4619 15 8 1.9945 2.2903 3.5435 16 6 1.7124 1.8391 4.7940 17 6 0.4394 2.0023 5.3208 18 6 -0.6326 2.6798 4.5066 19 6 0.1566 1.5475 6.5942 20 6 1.1380 0.9200 7.3392 21 6 2.4060 0.7515 6.8144 22 6 2.6953 1.2095 5.5436 23 6 4.0774 1.0249 4.9720 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1593 -0.3123 -2.5279 30 1 2.4001 0.4969 2.6007 31 1 0.7292 1.0884 2.4380 32 1 -0.6101 3.7528 4.6972 33 1 -0.4554 2.4952 3.4471 34 1 -1.6078 2.2815 4.7867 35 1 -0.8329 1.6782 7.0065 36 1 0.9136 0.5612 8.3328 37 1 3.1706 0.2606 7.3982 38 1 4.1277 0.0733 4.4428 39 1 4.2957 1.8377 4.2794 40 1 4.8086 1.0302 5.7804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:18 Heat of formation + Delta-G solvation = -50.394527 kcal Electronic energy + Delta-G solvation = -21887.963246 eV Core-core repulsion = 18668.159634 eV Total energy + Delta-G solvation = -3219.803612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11264 -38.52419 -36.76925 -34.88347 -33.50147 -32.12593 -31.04242 -29.48511 -28.36898 -26.56531 -26.50831 -24.46903 -22.32252 -21.65974 -20.79603 -19.21985 -17.56347 -16.73647 -16.36869 -15.79043 -15.41513 -15.10802 -14.64751 -14.28125 -13.87929 -13.83931 -13.27517 -13.03609 -12.96214 -12.91867 -12.71713 -12.57619 -12.22774 -11.79894 -11.77433 -11.62466 -11.45911 -11.13949 -11.11890 -11.04042 -10.93818 -10.45141 -10.37302 -10.17192 -9.50829 -8.93693 -8.54491 -8.39735 -8.36125 -7.45597 -6.34027 -4.02938 1.27191 1.36874 3.19861 3.25077 3.27365 3.47932 3.85764 3.97149 4.25727 4.81542 4.87469 4.95729 4.98200 5.04571 5.27258 5.44061 5.50407 5.60028 5.60715 5.65106 5.75287 5.77756 5.78785 5.87177 5.89893 5.92362 6.15402 6.21567 6.26673 6.39137 6.44307 6.47411 6.51456 6.68568 6.81377 6.85676 7.16050 7.56987 7.82870 8.27986 8.50903 9.17526 9.34865 9.98048 10.71389 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028586 B = 0.004468 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.276497 B = 6265.354336 C = 6524.649476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.439 5.439 4 C -0.308 4.308 5 H 0.089 0.911 6 C 0.040 3.960 7 N -0.872 5.872 8 Si 0.920 3.080 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.465 3.535 13 O -0.558 6.558 14 C 0.056 3.944 15 O -0.307 6.307 16 C 0.099 3.901 17 C -0.099 4.099 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.097 4.097 23 C -0.117 4.117 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.106 0.894 28 H 0.046 0.954 29 H 0.268 0.732 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -4.126 13.288 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.161 5.161 4 C -0.436 4.436 5 H 0.107 0.893 6 C -0.165 4.165 7 N -0.510 5.510 8 Si 0.747 3.253 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.251 3.749 13 O -0.439 6.439 14 C -0.022 4.022 15 O -0.223 6.223 16 C 0.054 3.946 17 C -0.100 4.100 18 C -0.168 4.168 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.098 4.098 23 C -0.173 4.173 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.124 0.876 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.922 -3.519 13.109 14.808 hybrid contribution -0.025 -0.219 -0.700 0.734 sum -5.947 -3.738 12.409 14.259 Atomic orbital electron populations 1.22244 0.98111 1.00501 1.01620 1.21504 0.91718 0.85563 1.03564 1.43358 1.56638 1.11779 1.04280 1.19341 1.35093 0.98719 0.90404 0.89348 1.25436 0.93866 0.96546 1.00647 1.69912 1.29353 1.17512 1.34176 0.86101 0.78400 0.78896 0.81920 1.19655 1.20956 1.19834 1.19970 0.82657 0.88253 0.83992 1.90559 1.48684 1.18307 1.86358 1.22655 1.00540 0.92369 0.86590 1.86121 1.86598 1.38525 1.11031 1.18537 0.91734 0.97507 0.86793 1.20278 0.94361 0.99541 0.95797 1.20714 0.95713 1.00366 1.00041 1.20877 0.99495 0.99655 0.93608 1.21072 0.93388 1.00004 0.99778 1.20899 0.96984 1.00840 0.94860 1.20309 0.96793 0.97525 0.95128 1.20753 0.92051 1.03224 1.01311 0.92131 0.92927 0.94016 0.87557 0.93571 0.92154 0.91279 0.91550 0.90849 0.91087 0.91767 0.85948 0.86092 0.85914 0.91189 0.90219 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.15 37.16 0.38 -2.54 16 2 C 0.10 2.15 5.41 -4.04 -0.02 2.12 16 3 N -0.44 -11.14 2.50 -114.82 -0.29 -11.42 16 4 C -0.31 -8.53 8.84 -14.93 -0.13 -8.66 16 5 H 0.09 2.55 7.82 -52.48 -0.41 2.14 16 6 C 0.04 1.04 4.95 -17.47 -0.09 0.96 16 7 N -0.87 -23.38 11.61 55.50 0.64 -22.74 16 8 Si 0.92 20.51 29.59 -169.99 -5.03 15.48 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 12 C 0.46 11.76 7.67 -10.99 -0.08 11.67 16 13 O -0.56 -16.43 16.41 -14.36 -0.24 -16.66 16 14 C 0.06 1.12 4.77 36.01 0.17 1.29 16 15 O -0.31 -6.21 7.86 -39.32 -0.31 -6.52 16 16 C 0.10 1.66 5.67 -39.22 -0.22 1.44 16 17 C -0.10 -1.45 5.89 -104.48 -0.62 -2.06 16 18 C -0.11 -1.50 9.79 36.01 0.35 -1.15 16 19 C -0.12 -1.42 9.70 -39.61 -0.38 -1.80 16 20 C -0.12 -1.39 10.04 -39.56 -0.40 -1.79 16 21 C -0.12 -1.44 9.70 -39.61 -0.38 -1.82 16 22 C -0.10 -1.45 5.89 -104.47 -0.62 -2.06 16 23 C -0.12 -1.66 9.79 36.01 0.35 -1.31 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.68 6.60 -51.93 -0.34 0.34 16 27 H 0.11 2.49 5.76 -51.93 -0.30 2.19 16 28 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.07 1.30 7.41 -51.93 -0.38 0.91 16 31 H 0.07 1.18 5.62 -51.93 -0.29 0.89 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.08 6.30 -51.93 -0.33 0.75 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 40 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -32.01 332.47 -7.62 -39.64 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.73 Total: 2.93 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.69 Total: -5.71 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.36 Total: -34.16 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.54 Total: -23.18 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.01 -7.62 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.757 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds