Wall clock time and date at job start Mon Mar 30 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47024 * 2 1 4 4 C 1.37099 * 119.99505 * 264.76741 * 3 2 1 5 5 H 1.08003 * 120.00001 * 138.85481 * 4 3 2 6 6 C 1.38945 * 120.00189 * 318.85193 * 4 3 2 7 7 N 1.31410 * 120.00284 * 341.83409 * 6 4 3 8 8 Si 1.86806 * 120.00135 * 161.83380 * 6 4 3 9 9 H 1.48502 * 109.46943 * 60.00205 * 8 6 4 10 10 H 1.48498 * 109.46906 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47088 * 299.99980 * 8 6 4 12 12 C 1.34771 * 120.00273 * 84.76887 * 3 2 1 13 13 O 1.21294 * 119.99842 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00053 * 359.97438 * 12 3 2 15 15 O 1.42908 * 109.47124 * 180.02562 * 14 12 3 16 16 C 1.35896 * 116.99656 * 179.97438 * 15 14 12 17 17 C 1.38732 * 120.05893 * 270.27194 * 16 15 14 18 18 C 1.50699 * 120.02559 * 0.02562 * 17 16 15 19 19 C 1.38139 * 119.94574 * 180.25586 * 17 16 15 20 20 C 1.38271 * 120.05473 * 359.45413 * 19 17 16 21 21 C 1.38263 * 120.11068 * 0.29339 * 20 19 17 22 22 C 1.38145 * 120.05502 * 359.97438 * 21 20 19 23 23 C 1.50702 * 120.02412 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47268 * 60.00272 * 1 2 3 25 25 H 1.09006 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47429 * 300.00566 * 1 2 3 27 27 H 1.08993 * 109.47280 * 239.99363 * 2 1 3 28 28 H 1.09003 * 109.46578 * 119.99809 * 2 1 3 29 29 H 0.96999 * 120.00765 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47001 * 60.00018 * 14 12 3 31 31 H 1.08999 * 109.46684 * 299.99714 * 14 12 3 32 32 H 1.09000 * 109.47397 * 270.25179 * 18 17 16 33 33 H 1.08999 * 109.47744 * 30.25744 * 18 17 16 34 34 H 1.08998 * 109.47043 * 150.25367 * 18 17 16 35 35 H 1.07998 * 119.97539 * 179.72698 * 19 17 16 36 36 H 1.07998 * 119.94138 * 180.27644 * 20 19 17 37 37 H 1.07996 * 119.96900 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47072 * 90.00509 * 23 22 21 39 39 H 1.09001 * 109.46959 * 209.99850 * 23 22 21 40 40 H 1.08997 * 109.47447 * 329.99862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9913 -1.1824 5 1 2.0743 3.0217 -1.3536 6 6 3.0371 1.2841 -2.1605 7 7 3.6791 0.1816 -1.8451 8 14 3.0500 1.9003 -3.9240 9 1 3.6537 3.2563 -3.9701 10 1 3.8481 0.9736 -4.7662 11 1 1.6579 1.9604 -4.4375 12 6 2.1426 2.0521 1.1623 13 8 2.5474 3.1955 1.1622 14 6 1.7787 1.3816 2.4619 15 8 1.9945 2.2903 3.5435 16 6 1.7124 1.8391 4.7940 17 6 0.4394 2.0023 5.3208 18 6 -0.6326 2.6798 4.5066 19 6 0.1566 1.5475 6.5942 20 6 1.1380 0.9200 7.3392 21 6 2.4060 0.7515 6.8144 22 6 2.6953 1.2095 5.5436 23 6 4.0774 1.0249 4.9720 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1593 -0.3123 -2.5279 30 1 2.4001 0.4969 2.6007 31 1 0.7292 1.0884 2.4380 32 1 -0.6101 3.7528 4.6972 33 1 -0.4554 2.4952 3.4471 34 1 -1.6078 2.2815 4.7867 35 1 -0.8329 1.6782 7.0065 36 1 0.9136 0.5612 8.3328 37 1 3.1706 0.2606 7.3982 38 1 4.1277 0.0733 4.4428 39 1 4.2957 1.8377 4.2794 40 1 4.8086 1.0302 5.7804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:18 Heat of formation + Delta-G solvation = -68.148381 kcal Electronic energy + Delta-G solvation = -21888.733111 eV Core-core repulsion = 18668.159634 eV Total energy + Delta-G solvation = -3220.573477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36053 -40.29016 -38.12017 -36.86210 -34.53555 -34.11289 -32.11665 -31.22731 -29.93337 -27.81291 -27.55113 -26.35439 -24.00474 -22.74813 -21.83130 -21.08362 -19.01200 -18.59561 -17.65591 -17.52523 -17.08943 -16.51316 -16.06074 -15.91126 -15.42939 -14.92575 -14.74200 -14.60647 -14.35498 -14.08084 -13.87115 -13.76994 -13.61468 -13.58902 -13.40396 -12.87618 -12.85861 -12.70813 -12.50366 -12.39699 -12.23936 -12.13472 -12.06819 -11.86320 -10.96855 -10.82888 -10.40268 -9.53394 -9.47876 -9.46204 -8.37497 -6.15309 0.20827 0.37985 1.39433 1.40996 1.51449 1.92734 2.13040 2.41249 2.80666 2.97171 3.33766 3.80672 3.88765 3.91482 3.97665 4.10404 4.14075 4.33117 4.39353 4.46822 4.55080 4.56990 4.60811 4.68769 4.73533 4.78071 4.85789 4.91720 4.98376 5.15625 5.25135 5.31406 5.42163 5.49216 5.51959 5.52649 5.64461 5.88054 6.18839 6.44776 6.63718 7.13684 7.35755 7.98535 8.66626 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028586 B = 0.004468 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.276497 B = 6265.354336 C = 6524.649476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.098 3.902 3 N -0.446 5.446 4 C -0.345 4.345 5 H 0.062 0.938 6 C 0.008 3.992 7 N -0.890 5.890 8 Si 0.985 3.015 9 H -0.279 1.279 10 H -0.270 1.270 11 H -0.261 1.261 12 C 0.448 3.552 13 O -0.616 6.616 14 C 0.076 3.924 15 O -0.334 6.334 16 C 0.055 3.945 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.113 4.113 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.275 0.725 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 -6.072 15.215 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.167 5.167 4 C -0.473 4.473 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.527 5.527 8 Si 0.808 3.192 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.185 1.185 12 C 0.237 3.763 13 O -0.502 6.502 14 C -0.001 4.001 15 O -0.251 6.251 16 C 0.012 3.988 17 C -0.113 4.113 18 C -0.167 4.167 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.170 4.170 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.315 -5.515 15.044 17.614 hybrid contribution 0.421 0.352 -1.178 1.300 sum -6.894 -5.163 13.866 16.323 Atomic orbital electron populations 1.22133 0.94924 1.02848 1.01435 1.21653 0.94314 0.83187 1.03316 1.43656 1.56086 1.13062 1.03869 1.19332 1.37192 0.98396 0.92349 0.92035 1.26190 0.92751 0.96509 1.04084 1.69977 1.29076 1.18053 1.35565 0.85143 0.79061 0.78011 0.77003 1.20451 1.19397 1.18504 1.20851 0.81874 0.87824 0.85794 1.90498 1.51350 1.20832 1.87477 1.22313 1.01684 0.91634 0.84489 1.86097 1.87186 1.39302 1.12480 1.18928 0.93666 1.00538 0.85660 1.20478 0.93610 0.99998 0.97181 1.20717 0.97140 1.00396 0.98445 1.21265 1.01244 0.98386 0.92333 1.21564 0.92383 0.98038 1.01010 1.21252 0.98428 0.99993 0.93678 1.20473 0.96350 0.98252 0.96392 1.20709 0.93086 1.01744 1.01469 0.93506 0.89196 0.93025 0.89599 0.91866 0.91507 0.90352 0.89326 0.91183 0.93681 0.88699 0.82803 0.82198 0.83073 0.91044 0.93928 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 10.15 71.98 0.73 -4.54 16 2 C 0.10 4.21 5.41 86.38 0.47 4.68 16 3 N -0.45 -23.54 2.50 -635.55 -1.59 -25.13 16 4 C -0.34 -19.97 8.84 84.04 0.74 -19.22 16 5 H 0.06 3.81 7.82 -2.91 -0.02 3.78 16 6 C 0.01 0.42 4.95 84.93 0.42 0.84 16 7 N -0.89 -48.23 11.61 21.66 0.25 -47.97 16 8 Si 0.98 42.54 29.59 68.60 2.03 44.57 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 C 0.45 23.88 7.67 87.66 0.67 24.56 16 13 O -0.62 -38.85 16.41 15.96 0.26 -38.59 16 14 C 0.08 3.14 4.77 71.24 0.34 3.48 16 15 O -0.33 -14.18 7.86 -73.35 -0.58 -14.75 16 16 C 0.06 1.87 5.67 22.51 0.13 2.00 16 17 C -0.11 -3.12 5.89 -19.77 -0.12 -3.24 16 18 C -0.11 -2.88 9.79 71.24 0.70 -2.19 16 19 C -0.11 -2.33 9.70 22.25 0.22 -2.11 16 20 C -0.11 -2.01 10.04 22.28 0.22 -1.79 16 21 C -0.12 -2.45 9.70 22.25 0.22 -2.24 16 22 C -0.11 -3.31 5.89 -19.77 -0.12 -3.42 16 23 C -0.11 -3.25 9.79 71.24 0.70 -2.56 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.05 1.64 6.60 -2.39 -0.02 1.62 16 27 H 0.09 4.05 5.76 -2.39 -0.01 4.04 16 28 H 0.06 2.44 6.66 -2.39 -0.02 2.43 16 29 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.08 3.02 7.41 -2.39 -0.02 3.00 16 31 H 0.09 3.19 5.62 -2.39 -0.01 3.17 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.39 6.30 -2.39 -0.02 1.38 16 34 H 0.09 1.80 8.09 -2.39 -0.02 1.79 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.04 1.51 7.53 -2.39 -0.02 1.49 16 40 H 0.09 2.05 8.09 -2.39 -0.02 2.03 16 Total: -1.00 -74.55 332.47 6.73 -67.83 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.03 Total: 19.80 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.32 Total: -5.75 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -1.34 Total: -73.11 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.31 Total: -53.34 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.55 6.73 -67.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.320 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds