Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00216 * 2 1 4 4 C 1.52993 * 109.47637 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47477 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46883 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99919 * 269.99632 * 6 5 4 8 8 C 1.34780 * 120.00189 * 90.00603 * 6 5 4 9 9 O 1.21546 * 119.99411 * 4.44729 * 8 6 5 10 10 C 1.47880 * 120.00093 * 184.45571 * 8 6 5 11 11 C 1.39922 * 120.02720 * 142.23968 * 10 8 6 12 12 C 1.38324 * 120.36403 * 180.02562 * 11 10 8 13 13 C 1.37750 * 120.40818 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04265 * 0.02562 * 13 12 11 15 15 C 1.41441 * 120.17963 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99588 * 147.41652 * 15 14 13 17 17 C 1.39932 * 119.99705 * 327.41472 * 15 14 13 18 18 N 1.30824 * 120.00322 * 351.21814 * 17 15 14 19 19 Si 1.86806 * 119.99779 * 171.21899 * 17 15 14 20 20 H 1.48500 * 109.47241 * 84.99092 * 19 17 15 21 21 H 1.48497 * 109.47087 * 204.99365 * 19 17 15 22 22 H 1.48500 * 109.47131 * 324.99150 * 19 17 15 23 23 C 1.38996 * 120.02524 * 322.25723 * 10 8 6 24 24 H 1.09006 * 109.47401 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47396 * 300.00082 * 1 2 3 26 26 H 1.09004 * 109.47196 * 60.00261 * 1 2 3 27 27 H 1.09001 * 109.47061 * 59.99388 * 3 2 1 28 28 H 1.08999 * 109.47245 * 300.00199 * 3 2 1 29 29 H 1.09001 * 109.47247 * 59.99683 * 4 3 2 30 30 H 1.09002 * 109.46845 * 300.00009 * 4 3 2 31 31 H 1.09001 * 109.47035 * 60.00289 * 5 4 3 32 32 H 1.08996 * 109.46891 * 300.00090 * 5 4 3 33 33 H 1.08996 * 109.47449 * 264.44601 * 7 6 5 34 34 H 1.09003 * 109.47146 * 24.44968 * 7 6 5 35 35 H 1.09006 * 109.47136 * 144.44710 * 7 6 5 36 36 H 1.08000 * 119.81598 * 359.97438 * 11 10 8 37 37 H 1.07992 * 119.79725 * 180.02562 * 12 11 10 38 38 H 1.08008 * 119.98412 * 180.02562 * 13 12 11 39 39 H 0.96996 * 120.00063 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.20185 * 359.70378 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4666 0.0012 7 6 6.3473 2.4098 1.2706 8 6 6.2909 2.4125 -1.1654 9 8 5.6950 2.5410 -2.2170 10 6 7.7539 2.1968 -1.1660 11 6 8.3433 1.3976 -2.1517 12 6 9.7110 1.1907 -2.1586 13 6 10.5085 1.7691 -1.1958 14 6 9.9336 2.5762 -0.1962 15 6 10.7498 3.1720 0.7934 16 1 10.4840 4.1345 1.2049 17 6 11.9017 2.5143 1.2392 18 7 12.1337 1.2802 0.8724 19 14 13.1082 3.3986 2.3582 20 1 12.6610 3.2700 3.7684 21 1 14.4561 2.7938 2.2092 22 1 13.1664 4.8352 1.9864 23 6 8.5444 2.7874 -0.1872 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8463 0.8899 28 1 1.6886 1.8463 -0.8899 29 1 3.8574 0.6435 -0.8891 30 1 3.8566 0.6439 0.8909 31 1 3.8358 3.1238 0.8896 32 1 3.8364 3.1227 -0.8904 33 1 6.6949 3.4085 1.5350 34 1 5.6866 2.0362 2.0528 35 1 7.2032 1.7425 1.1685 36 1 7.7270 0.9391 -2.9108 37 1 10.1564 0.5725 -2.9239 38 1 11.5757 1.6033 -1.2079 39 1 12.9319 0.8242 1.1818 40 1 8.0943 3.4087 0.5729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069365381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = -62.860327 kcal Electronic energy + Delta-G solvation = -20993.619738 eV Core-core repulsion = 17773.275568 eV Total energy + Delta-G solvation = -3220.344170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65329 -38.09321 -37.12291 -35.50018 -33.66480 -32.59135 -29.96020 -29.70985 -27.40559 -26.42838 -25.27687 -25.04950 -22.37988 -21.28165 -20.79920 -19.11662 -17.34262 -16.65478 -16.36272 -15.92038 -15.72532 -15.37398 -15.01212 -14.81570 -14.58588 -14.04460 -13.58222 -13.22074 -12.79721 -12.67453 -12.43167 -12.22173 -12.15664 -11.86574 -11.75404 -11.64140 -11.20649 -11.19755 -11.02565 -10.82425 -10.69112 -10.51085 -10.24608 -9.83617 -9.53062 -9.27943 -9.07312 -8.35281 -7.61003 -7.44585 -6.75674 -4.46960 2.27333 2.73012 3.05200 3.08048 3.11476 3.21913 3.68034 3.75876 3.91723 4.60892 4.82278 4.94812 5.08327 5.18344 5.19722 5.23357 5.36304 5.44634 5.49607 5.51561 5.53617 5.66679 5.84882 6.09257 6.15212 6.21001 6.26928 6.36938 6.74613 6.83912 6.90056 6.98999 7.02044 7.17790 7.34754 7.60137 7.75726 7.90334 7.93538 8.09306 8.49975 8.73053 8.80085 8.83216 10.20570 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.003578 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.588367 B = 7823.882631 C = 8319.725022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.066 3.934 4 C -0.135 4.135 5 C 0.121 3.879 6 N -0.617 5.617 7 C 0.077 3.923 8 C 0.568 3.432 9 O -0.554 6.554 10 C -0.119 4.119 11 C -0.172 4.172 12 C -0.118 4.118 13 C -0.128 4.128 14 C 0.101 3.899 15 C -0.469 4.469 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.808 5.808 19 Si 0.910 3.090 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.188 4.188 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.179 0.260 3.182 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.350 5.350 7 C -0.066 4.066 8 C 0.360 3.640 9 O -0.432 6.432 10 C -0.122 4.122 11 C -0.192 4.192 12 C -0.136 4.136 13 C -0.148 4.148 14 C 0.099 3.901 15 C -0.499 4.499 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.434 5.434 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.208 4.208 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.202 -0.016 2.679 13.471 hybrid contribution 0.385 0.444 0.682 0.900 sum -12.817 0.428 3.361 13.257 Atomic orbital electron populations 1.22729 0.81219 1.02656 0.99874 1.87895 1.19546 1.28232 1.95404 1.22445 0.93992 0.84552 1.00135 1.21907 0.92736 0.98719 1.04061 1.21199 0.80303 0.95790 1.02981 1.47721 1.05982 1.74323 1.07007 1.22202 0.97769 1.02498 0.84131 1.18984 0.88126 0.74419 0.82466 1.90663 1.70615 1.50623 1.31332 1.19275 0.90199 1.03561 0.99153 1.20410 0.94660 1.04393 0.99721 1.20688 0.93306 1.00595 0.99016 1.21542 0.99664 1.00088 0.93470 1.17553 0.90441 0.90841 0.91249 1.19463 1.06042 1.05059 1.19351 0.90473 1.25833 0.97747 0.94391 0.96181 1.69749 1.25415 1.09990 1.38295 0.86292 0.79307 0.80550 0.80338 1.19470 1.20273 1.18674 1.21627 0.93927 1.05849 0.99419 0.89725 0.94185 0.94100 0.93305 0.93081 0.90577 0.90931 0.90762 0.89844 0.92251 0.92109 0.88951 0.88490 0.88571 0.86191 0.90906 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.86 10.70 -35.23 -0.38 -5.24 16 3 C 0.07 0.73 5.94 37.15 0.22 0.95 16 4 C -0.14 -1.78 5.91 -26.74 -0.16 -1.93 16 5 C 0.12 1.63 5.42 -4.04 -0.02 1.61 16 6 N -0.62 -10.37 2.87 -182.68 -0.52 -10.90 16 7 C 0.08 1.14 8.85 59.85 0.53 1.67 16 8 C 0.57 11.91 7.37 -12.31 -0.09 11.82 16 9 O -0.55 -12.82 16.43 5.33 0.09 -12.73 16 10 C -0.12 -2.69 5.27 -105.04 -0.55 -3.24 16 11 C -0.17 -3.95 9.62 -38.92 -0.37 -4.32 16 12 C -0.12 -2.70 10.01 -39.73 -0.40 -3.10 16 13 C -0.13 -3.19 8.63 -38.81 -0.33 -3.52 16 14 C 0.10 2.54 5.51 -106.87 -0.59 1.96 16 15 C -0.47 -11.71 9.04 -37.73 -0.34 -12.05 16 16 H 0.08 1.84 7.86 -52.49 -0.41 1.43 16 17 C 0.07 1.79 5.26 -17.35 -0.09 1.70 16 18 N -0.81 -20.12 11.00 55.55 0.61 -19.51 16 19 Si 0.91 18.04 29.57 -169.99 -5.03 13.02 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 C -0.19 -4.29 7.31 -38.44 -0.28 -4.57 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.08 1.21 7.37 -51.93 -0.38 0.82 16 33 H 0.06 0.85 6.79 -51.93 -0.35 0.50 16 34 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 35 H 0.09 1.61 5.87 -51.93 -0.31 1.30 16 36 H 0.10 2.14 8.03 -52.49 -0.42 1.72 16 37 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 38 H 0.12 3.07 6.44 -52.48 -0.34 2.74 16 39 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 40 H 0.11 2.26 5.14 -52.49 -0.27 1.99 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -29.14 333.99 -7.40 -36.54 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.83 Total: 5.46 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -1.37 Total: -11.67 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.09 Total: -30.41 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.29 Total: -17.97 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.14 -7.40 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069365381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.323 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds