Wall clock time and date at job start Mon Mar 30 2020 01:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46909 * 2 1 4 4 C 1.35917 * 116.99948 * 179.97438 * 3 2 1 5 5 C 1.38850 * 119.98137 * 0.02562 * 4 3 2 6 6 C 1.38243 * 120.23378 * 179.97438 * 5 4 3 7 7 C 1.38012 * 120.21059 * 359.67639 * 6 5 4 8 8 C 1.39559 * 119.96192 * 0.59963 * 7 6 5 9 9 C 1.47855 * 120.12089 * 179.69620 * 8 7 6 10 10 O 1.21553 * 120.00119 * 140.19103 * 9 8 7 11 11 N 1.34780 * 119.99977 * 320.19777 * 9 8 7 12 12 C 1.46505 * 119.99836 * 4.36700 * 11 9 8 13 13 C 1.46502 * 120.00091 * 184.37775 * 11 9 8 14 14 H 1.08996 * 109.46872 * 359.97438 * 13 11 9 15 15 C 1.52992 * 109.47468 * 119.99743 * 13 11 9 16 16 C 1.50703 * 109.46521 * 239.99437 * 13 11 9 17 17 H 1.08000 * 120.00402 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99905 * 179.97438 * 16 13 11 19 19 N 1.31524 * 120.00082 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00334 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47419 * 119.99969 * 20 18 16 23 23 H 1.48499 * 109.47342 * 240.00403 * 20 18 16 24 24 C 1.38454 * 119.98388 * 180.02562 * 4 3 2 25 25 H 1.08995 * 109.47059 * 300.00170 * 1 2 3 26 26 H 1.09002 * 109.46828 * 60.00097 * 1 2 3 27 27 H 1.08994 * 109.46579 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47305 * 240.00312 * 2 1 3 29 29 H 1.08998 * 109.47121 * 119.99506 * 2 1 3 30 30 H 1.07991 * 119.88122 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.89525 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.01599 * 180.30012 * 7 6 5 33 33 H 1.08997 * 109.46593 * 91.79291 * 12 11 9 34 34 H 1.08996 * 109.46927 * 331.79850 * 12 11 9 35 35 H 1.08997 * 109.47270 * 211.79287 * 12 11 9 36 36 H 1.09008 * 109.47430 * 59.99505 * 15 13 11 37 37 H 1.08996 * 109.47223 * 179.97438 * 15 13 11 38 38 H 1.09007 * 109.47061 * 299.99968 * 15 13 11 39 39 H 0.96989 * 120.00146 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.10251 * 0.04159 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1993 0.4240 0.0005 6 6 5.5706 0.5991 0.0005 7 6 6.1083 1.8702 -0.0062 8 6 5.2665 2.9832 -0.0003 9 6 5.8388 4.3465 -0.0007 10 8 5.3254 5.2211 -0.6708 11 7 6.9300 4.6194 0.7418 12 6 7.6055 3.5449 1.4736 13 6 7.4405 5.9906 0.8174 14 1 6.8133 6.6455 0.2126 15 6 7.4186 6.4635 2.2722 16 6 8.8546 6.0293 0.2978 17 1 9.3257 5.1234 -0.0539 18 6 9.5465 7.2216 0.2705 19 7 8.9725 8.3250 0.6983 20 14 11.2990 7.2699 -0.3742 21 1 11.7103 5.9057 -0.7925 22 1 11.3728 8.1877 -1.5393 23 1 12.2070 7.7548 0.6962 24 6 3.8826 2.8050 0.0011 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.7842 -0.5729 0.0005 31 1 6.2231 -0.2614 0.0001 32 1 7.1801 2.0033 -0.0110 33 1 8.3937 3.1213 0.8513 34 1 6.8842 2.7676 1.7255 35 1 8.0413 3.9465 2.3885 36 1 8.0459 5.8084 2.8768 37 1 7.7987 7.4835 2.3284 38 1 6.3957 6.4354 2.6481 39 1 9.4591 9.1637 0.6787 40 1 3.2260 3.6625 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069849245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:18 Heat of formation + Delta-G solvation = -40.486517 kcal Electronic energy + Delta-G solvation = -21330.392506 eV Core-core repulsion = 18111.018537 eV Total energy + Delta-G solvation = -3219.373969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36118 -39.10542 -37.05778 -35.37137 -32.96550 -32.16770 -31.09803 -29.90750 -28.74565 -26.30266 -25.22740 -24.51175 -22.86736 -22.28959 -20.76408 -19.12551 -17.69912 -16.50448 -16.35169 -16.27207 -16.11083 -15.38921 -15.25739 -14.45738 -14.35957 -13.74261 -13.50119 -13.46745 -13.01749 -12.84669 -12.62050 -12.47292 -12.11798 -12.04963 -11.75897 -11.55248 -11.22967 -11.05499 -10.96670 -10.82387 -10.74219 -10.69480 -10.23908 -10.16046 -9.17060 -9.11220 -8.85892 -8.42394 -8.18504 -7.59884 -6.06349 -4.14230 1.07835 1.44944 2.99562 3.26882 3.31943 3.35391 3.38647 3.89470 4.02809 4.41039 4.64551 4.65152 4.79648 4.88538 4.96083 5.08996 5.21793 5.25111 5.29969 5.47152 5.50686 5.58527 5.75495 5.78809 5.96985 6.06842 6.22835 6.29552 6.37525 6.50738 6.64686 6.77756 6.83976 7.05654 7.34801 7.42892 7.52228 7.72000 8.01876 8.19538 8.50063 8.83058 9.01753 9.52118 10.99119 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037028 B = 0.003697 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.997070 B = 7572.071295 C = 7886.141009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.120 3.880 5 C -0.198 4.198 6 C -0.090 4.090 7 C -0.130 4.130 8 C -0.075 4.075 9 C 0.543 3.457 10 O -0.543 6.543 11 N -0.583 5.583 12 C 0.078 3.922 13 C 0.257 3.743 14 H 0.065 0.935 15 C -0.148 4.148 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.103 4.103 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.095 0.905 38 H 0.012 0.988 39 H 0.263 0.737 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 -18.485 1.901 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.075 3.925 5 C -0.217 4.217 6 C -0.108 4.108 7 C -0.149 4.149 8 C -0.078 4.078 9 C 0.330 3.670 10 O -0.422 6.422 11 N -0.313 5.313 12 C -0.065 4.065 13 C 0.157 3.843 14 H 0.082 0.918 15 C -0.206 4.206 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.122 4.122 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.496 -17.648 1.594 20.595 hybrid contribution 1.166 -0.277 -0.293 1.234 sum -9.330 -17.925 1.300 20.250 Atomic orbital electron populations 1.21775 0.92813 1.02703 1.03662 1.22760 0.95846 0.82190 1.01269 1.86091 1.18968 1.29025 1.88907 1.18777 0.82281 0.93782 0.97686 1.21297 0.94475 0.97756 1.08128 1.20857 0.94183 0.97096 0.98652 1.21599 1.00751 0.91555 1.00955 1.20004 0.93077 0.94493 1.00233 1.18204 0.81171 0.86866 0.80783 1.90750 1.61734 1.47542 1.42176 1.48166 1.26206 1.11456 1.45486 1.21933 0.96852 0.90482 0.97276 1.18999 0.94786 0.76207 0.94295 0.91760 1.22105 0.97013 1.04253 0.97240 1.21343 0.97822 0.94736 1.42355 0.92180 1.24899 0.98404 0.95390 0.95144 1.69888 1.37121 0.99061 1.46555 0.86425 0.84168 0.78113 0.78594 1.19813 1.20911 1.20949 1.20410 0.93998 0.95242 1.02582 0.91467 0.91458 0.90483 0.92111 0.92108 0.85575 0.85400 0.84343 0.92967 0.91847 0.91014 0.95004 0.88672 0.96885 0.92726 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.46 5.46 37.16 0.20 0.67 16 3 O -0.32 -4.04 10.13 -19.48 -0.20 -4.24 16 4 C 0.12 1.66 6.68 -39.28 -0.26 1.40 16 5 C -0.20 -2.28 9.03 -39.35 -0.36 -2.64 16 6 C -0.09 -1.04 10.03 -39.66 -0.40 -1.44 16 7 C -0.13 -1.86 7.46 -39.17 -0.29 -2.15 16 8 C -0.07 -1.31 5.22 -104.99 -0.55 -1.86 16 9 C 0.54 12.02 7.35 -12.32 -0.09 11.93 16 10 O -0.54 -14.17 16.26 5.32 0.09 -14.09 16 11 N -0.58 -12.84 2.75 -176.38 -0.49 -13.32 16 12 C 0.08 1.34 8.14 59.85 0.49 1.83 16 13 C 0.26 6.67 2.63 -69.08 -0.18 6.49 16 14 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 15 C -0.15 -3.57 8.94 37.15 0.33 -3.23 16 16 C -0.52 -14.29 8.37 -34.44 -0.29 -14.57 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.10 -1.70 9.57 -39.02 -0.37 -2.07 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.13 1.09 6.28 -52.49 -0.33 0.76 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.14 1.89 5.56 -52.49 -0.29 1.59 16 33 H 0.05 0.85 7.23 -51.93 -0.38 0.47 16 34 H 0.06 0.92 5.37 -51.93 -0.28 0.64 16 35 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 36 H 0.03 0.70 6.67 -51.92 -0.35 0.36 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.14 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -32.20 326.21 -7.05 -39.25 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.50 Total: 0.63 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.48 Total: -4.63 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.14 Total: -37.98 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.11 Total: -18.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.20 -7.05 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069849245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.240 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds