Wall clock time and date at job start Mon Mar 30 2020 01:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46909 * 2 1 4 4 C 1.35917 * 116.99948 * 179.97438 * 3 2 1 5 5 C 1.38850 * 119.98137 * 0.02562 * 4 3 2 6 6 C 1.38243 * 120.23378 * 179.97438 * 5 4 3 7 7 C 1.38012 * 120.21059 * 359.67639 * 6 5 4 8 8 C 1.39559 * 119.96192 * 0.59963 * 7 6 5 9 9 C 1.47855 * 120.12089 * 179.69620 * 8 7 6 10 10 O 1.21553 * 120.00119 * 140.19103 * 9 8 7 11 11 N 1.34780 * 119.99977 * 320.19777 * 9 8 7 12 12 C 1.46505 * 119.99836 * 4.36700 * 11 9 8 13 13 C 1.46502 * 120.00091 * 184.37775 * 11 9 8 14 14 H 1.08996 * 109.46872 * 359.97438 * 13 11 9 15 15 C 1.52992 * 109.47468 * 119.99743 * 13 11 9 16 16 C 1.50703 * 109.46521 * 239.99437 * 13 11 9 17 17 H 1.08000 * 120.00402 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99905 * 179.97438 * 16 13 11 19 19 N 1.31524 * 120.00082 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00334 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47419 * 119.99969 * 20 18 16 23 23 H 1.48499 * 109.47342 * 240.00403 * 20 18 16 24 24 C 1.38454 * 119.98388 * 180.02562 * 4 3 2 25 25 H 1.08995 * 109.47059 * 300.00170 * 1 2 3 26 26 H 1.09002 * 109.46828 * 60.00097 * 1 2 3 27 27 H 1.08994 * 109.46579 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47305 * 240.00312 * 2 1 3 29 29 H 1.08998 * 109.47121 * 119.99506 * 2 1 3 30 30 H 1.07991 * 119.88122 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.89525 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.01599 * 180.30012 * 7 6 5 33 33 H 1.08997 * 109.46593 * 91.79291 * 12 11 9 34 34 H 1.08996 * 109.46927 * 331.79850 * 12 11 9 35 35 H 1.08997 * 109.47270 * 211.79287 * 12 11 9 36 36 H 1.09008 * 109.47430 * 59.99505 * 15 13 11 37 37 H 1.08996 * 109.47223 * 179.97438 * 15 13 11 38 38 H 1.09007 * 109.47061 * 299.99968 * 15 13 11 39 39 H 0.96989 * 120.00146 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.10251 * 0.04159 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1993 0.4240 0.0005 6 6 5.5706 0.5991 0.0005 7 6 6.1083 1.8702 -0.0062 8 6 5.2665 2.9832 -0.0003 9 6 5.8388 4.3465 -0.0007 10 8 5.3254 5.2211 -0.6708 11 7 6.9300 4.6194 0.7418 12 6 7.6055 3.5449 1.4736 13 6 7.4405 5.9906 0.8174 14 1 6.8133 6.6455 0.2126 15 6 7.4186 6.4635 2.2722 16 6 8.8546 6.0293 0.2978 17 1 9.3257 5.1234 -0.0539 18 6 9.5465 7.2216 0.2705 19 7 8.9725 8.3250 0.6983 20 14 11.2990 7.2699 -0.3742 21 1 11.7103 5.9057 -0.7925 22 1 11.3728 8.1877 -1.5393 23 1 12.2070 7.7548 0.6962 24 6 3.8826 2.8050 0.0011 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.7842 -0.5729 0.0005 31 1 6.2231 -0.2614 0.0001 32 1 7.1801 2.0033 -0.0110 33 1 8.3937 3.1213 0.8513 34 1 6.8842 2.7676 1.7255 35 1 8.0413 3.9465 2.3885 36 1 8.0459 5.8084 2.8768 37 1 7.7987 7.4835 2.3284 38 1 6.3957 6.4354 2.6481 39 1 9.4591 9.1637 0.6787 40 1 3.2260 3.6625 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069849245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:18 Heat of formation + Delta-G solvation = -60.777489 kcal Electronic energy + Delta-G solvation = -21331.272388 eV Core-core repulsion = 18111.018537 eV Total energy + Delta-G solvation = -3220.253851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56930 -40.48725 -38.21430 -37.23688 -34.87916 -32.93036 -32.46024 -31.24721 -30.15852 -27.82079 -27.32310 -25.60593 -23.98996 -23.36852 -22.24841 -20.56077 -19.05781 -18.45201 -17.79842 -17.15105 -17.06244 -17.04188 -16.65957 -16.23224 -15.84123 -15.01817 -14.62473 -14.54097 -14.42552 -14.27485 -13.95843 -13.54271 -13.40859 -13.26865 -13.05396 -12.92849 -12.77954 -12.70941 -12.70517 -12.31665 -12.15504 -12.11876 -11.88238 -11.59841 -11.19084 -10.81384 -10.53703 -10.04922 -9.39763 -9.22278 -8.15551 -6.32565 -0.08719 0.39438 1.41132 1.42951 1.54526 1.77353 2.07671 2.37312 2.50270 2.76362 3.12495 3.57608 3.80503 4.03224 4.10188 4.15671 4.17400 4.33714 4.40723 4.44072 4.51499 4.66201 4.72865 4.82662 4.86190 4.93301 4.96699 4.98896 5.01717 5.16869 5.26779 5.33822 5.39379 5.44018 5.56687 5.64308 5.70481 6.00107 6.13106 6.43781 6.71711 6.74715 7.23027 7.41527 8.89503 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037028 B = 0.003697 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.997070 B = 7572.071295 C = 7886.141009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.338 6.338 4 C 0.120 3.880 5 C -0.179 4.179 6 C -0.071 4.071 7 C -0.132 4.132 8 C -0.096 4.096 9 C 0.534 3.466 10 O -0.603 6.603 11 N -0.588 5.588 12 C 0.076 3.924 13 C 0.260 3.740 14 H 0.007 0.993 15 C -0.133 4.133 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.969 3.031 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.129 4.129 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.147 0.853 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 -22.905 2.318 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.252 6.252 4 C 0.075 3.925 5 C -0.198 4.198 6 C -0.089 4.089 7 C -0.150 4.150 8 C -0.100 4.100 9 C 0.323 3.677 10 O -0.486 6.486 11 N -0.317 5.317 12 C -0.066 4.066 13 C 0.158 3.842 14 H 0.025 0.975 15 C -0.192 4.192 16 C -0.576 4.576 17 H 0.082 0.918 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.794 3.206 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.149 4.149 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.192 0.808 32 H 0.164 0.836 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.495 -22.118 2.041 24.157 hybrid contribution 0.713 1.002 -0.435 1.304 sum -8.783 -21.117 1.606 22.927 Atomic orbital electron populations 1.21828 0.91861 1.04279 1.02907 1.23164 0.96739 0.80336 1.02916 1.86090 1.18409 1.32065 1.88672 1.18775 0.83319 0.93278 0.97155 1.21764 0.94240 0.98612 1.05154 1.21327 0.94764 0.97005 0.95789 1.21720 1.00722 0.91661 1.00920 1.19592 0.93775 0.92553 1.04038 1.19029 0.80603 0.88490 0.79557 1.90695 1.63296 1.49992 1.44626 1.48158 1.26569 1.11121 1.45881 1.22206 0.97732 0.89754 0.96905 1.18622 0.93466 0.77912 0.94197 0.97485 1.21894 0.97625 1.03135 0.96524 1.21586 0.98256 0.95085 1.42663 0.91846 1.25785 1.02675 0.94935 0.95236 1.70035 1.38806 0.99633 1.47316 0.85345 0.79033 0.78384 0.77876 1.18666 1.21262 1.19825 1.20280 0.93543 0.96158 1.04935 0.92175 0.92342 0.87670 0.90455 0.90179 0.81500 0.80823 0.83561 0.91495 0.88724 0.90924 0.92949 0.91072 0.96271 0.92589 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.94 16 2 C 0.04 0.58 5.46 71.98 0.39 0.98 16 3 O -0.34 -8.19 10.13 -92.61 -0.94 -9.13 16 4 C 0.12 3.14 6.68 22.47 0.15 3.29 16 5 C -0.18 -3.31 9.03 22.42 0.20 -3.11 16 6 C -0.07 -1.29 10.03 22.22 0.22 -1.07 16 7 C -0.13 -3.44 7.46 22.54 0.17 -3.27 16 8 C -0.10 -3.43 5.22 -20.10 -0.10 -3.53 16 9 C 0.53 24.96 7.35 86.79 0.64 25.60 16 10 O -0.60 -34.29 16.26 -3.88 -0.06 -34.36 16 11 N -0.59 -26.70 2.75 -830.21 -2.29 -28.99 16 12 C 0.08 2.50 8.14 127.77 1.04 3.54 16 13 C 0.26 14.13 2.63 44.24 0.12 14.25 16 14 H 0.01 0.47 6.91 -2.39 -0.02 0.45 16 15 C -0.13 -6.65 8.94 71.98 0.64 -6.01 16 16 C -0.54 -29.91 8.37 25.60 0.21 -29.70 16 17 H 0.06 3.40 7.60 -2.91 -0.02 3.38 16 18 C 0.01 0.73 5.30 84.65 0.45 1.18 16 19 N -0.92 -53.99 11.32 21.45 0.24 -53.75 16 20 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C -0.13 -4.41 9.57 22.63 0.22 -4.19 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.82 7.66 -2.39 -0.02 0.80 16 29 H 0.08 0.80 7.66 -2.39 -0.02 0.79 16 30 H 0.17 1.75 6.28 -2.92 -0.02 1.74 16 31 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.15 3.55 5.56 -2.91 -0.02 3.53 16 33 H 0.07 2.02 7.23 -2.39 -0.02 2.00 16 34 H 0.09 2.54 5.37 -2.39 -0.01 2.52 16 35 H 0.07 2.38 6.43 -2.39 -0.02 2.36 16 36 H 0.05 2.34 6.67 -2.38 -0.02 2.32 16 37 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 38 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.26 14.66 8.31 -92.72 -0.77 13.89 16 40 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -76.21 326.21 5.11 -71.10 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.04 Total: 12.52 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.09 Total: -2.98 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.04 Total: -82.73 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.00 Total: -43.48 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -76.21 5.11 -71.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069849245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.320 kcal (2) G-P(sol) polarization free energy of solvation -76.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds