Wall clock time and date at job start Mon Mar 30 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.46982 * 2 1 4 4 C 1.35913 * 116.99810 * 180.02562 * 3 2 1 5 5 C 1.38852 * 119.98526 * 0.02562 * 4 3 2 6 6 C 1.38249 * 120.23729 * 180.02562 * 5 4 3 7 7 C 1.38005 * 120.20314 * 359.66885 * 6 5 4 8 8 C 1.39558 * 119.97194 * 0.60628 * 7 6 5 9 9 C 1.47851 * 120.12214 * 179.69567 * 8 7 6 10 10 O 1.21554 * 119.99926 * 200.30781 * 9 8 7 11 11 N 1.34771 * 120.00282 * 20.30771 * 9 8 7 12 12 C 1.46503 * 119.99789 * 6.98092 * 11 9 8 13 13 C 1.46502 * 120.00579 * 186.98662 * 11 9 8 14 14 H 1.09000 * 109.46557 * 359.97438 * 13 11 9 15 15 C 1.52999 * 109.47018 * 240.00183 * 13 11 9 16 16 C 1.50697 * 109.47441 * 119.99865 * 13 11 9 17 17 H 1.08011 * 119.99741 * 359.97438 * 16 13 11 18 18 C 1.37871 * 120.00289 * 180.02562 * 16 13 11 19 19 N 1.31515 * 119.99726 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 120.00165 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47029 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.46648 * 299.99318 * 20 18 16 23 23 H 1.48492 * 109.47176 * 59.99362 * 20 18 16 24 24 C 1.38455 * 119.98097 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47348 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47397 * 299.99982 * 1 2 3 27 27 H 1.09008 * 109.47477 * 60.00265 * 1 2 3 28 28 H 1.09004 * 109.46759 * 240.00119 * 2 1 3 29 29 H 1.08998 * 109.47146 * 120.00199 * 2 1 3 30 30 H 1.07997 * 119.88013 * 359.97438 * 5 4 3 31 31 H 1.07995 * 119.89537 * 179.97438 * 6 5 4 32 32 H 1.08008 * 120.01029 * 180.30306 * 7 6 5 33 33 H 1.08997 * 109.47700 * 266.30383 * 12 11 9 34 34 H 1.09003 * 109.46744 * 26.30878 * 12 11 9 35 35 H 1.09002 * 109.46910 * 146.30193 * 12 11 9 36 36 H 1.08994 * 109.47601 * 59.99756 * 15 13 11 37 37 H 1.08999 * 109.46779 * 180.02562 * 15 13 11 38 38 H 1.09002 * 109.46663 * 299.99015 * 15 13 11 39 39 H 0.97007 * 119.99911 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.10803 * 0.04290 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1992 0.4240 -0.0016 6 6 5.5705 0.5990 -0.0016 7 6 6.1082 1.8701 -0.0075 8 6 5.2664 2.9832 -0.0006 9 6 5.8388 4.3464 -0.0001 10 8 5.1657 5.2881 0.3709 11 7 7.1069 4.5449 -0.4109 12 6 7.8673 3.4402 -1.0007 13 6 7.7252 5.8653 -0.2676 14 1 7.0121 6.5529 0.1873 15 6 8.1312 6.3906 -1.6460 16 6 8.9468 5.7558 0.6080 17 1 9.2337 4.7982 1.0173 18 6 9.6975 6.8778 0.8876 19 7 9.3479 8.0437 0.3896 20 14 11.2122 6.7418 1.9724 21 1 11.8388 8.0803 2.1177 22 1 10.8186 6.2312 3.3101 23 1 12.1834 5.8058 1.3514 24 6 3.8824 2.8049 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7841 -0.5730 -0.0016 31 1 6.2231 -0.2615 -0.0020 32 1 7.1800 2.0032 -0.0124 33 1 8.4504 2.9451 -0.2242 34 1 7.1788 2.7246 -1.4501 35 1 8.5383 3.8292 -1.7666 36 1 7.2477 6.4699 -2.2794 37 1 8.5916 7.3728 -1.5393 38 1 8.8442 5.7032 -2.1012 39 1 9.8763 8.8332 0.5860 40 1 3.2259 3.6624 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069849246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:20 Heat of formation + Delta-G solvation = -47.375321 kcal Electronic energy + Delta-G solvation = -21347.622099 eV Core-core repulsion = 18127.949409 eV Total energy + Delta-G solvation = -3219.672690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61268 -40.49184 -38.20271 -37.28276 -34.93285 -32.94185 -32.46440 -31.31440 -30.08482 -27.96932 -27.31739 -25.57027 -23.99976 -23.31268 -22.23677 -20.62843 -19.09818 -18.41775 -17.84133 -17.14781 -17.04987 -17.03686 -16.47122 -16.20289 -15.95233 -14.99577 -14.64670 -14.58801 -14.41112 -14.25198 -14.00917 -13.56232 -13.45058 -13.27243 -13.04845 -12.88493 -12.80837 -12.73198 -12.67186 -12.21853 -12.13626 -11.96042 -11.80359 -11.57672 -11.19737 -10.78626 -10.51774 -10.06778 -9.37763 -9.21585 -8.14944 -6.32576 -0.14934 0.40495 1.42594 1.45563 1.52924 1.87928 2.04939 2.37720 2.51986 2.81968 3.12988 3.58554 3.81239 4.03389 4.09511 4.14492 4.16506 4.34182 4.40047 4.46214 4.51312 4.65230 4.71504 4.82502 4.87406 4.94063 4.96104 4.97846 5.02312 5.17307 5.26705 5.33962 5.39428 5.44909 5.57251 5.64410 5.72374 6.01624 6.12862 6.44139 6.72523 6.74920 7.23899 7.41994 8.89736 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034314 B = 0.003726 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.796463 B = 7513.740668 C = 7767.458684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.338 6.338 4 C 0.116 3.884 5 C -0.177 4.177 6 C -0.075 4.075 7 C -0.145 4.145 8 C -0.103 4.103 9 C 0.533 3.467 10 O -0.605 6.605 11 N -0.589 5.589 12 C 0.068 3.932 13 C 0.261 3.739 14 H 0.006 0.994 15 C -0.134 4.134 16 C -0.541 4.541 17 H 0.066 0.934 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.969 3.031 21 H -0.285 1.285 22 H -0.277 1.277 23 H -0.259 1.259 24 C -0.126 4.126 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.017 0.983 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.265 0.735 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 -22.603 -3.389 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.253 6.253 4 C 0.071 3.929 5 C -0.195 4.195 6 C -0.093 4.093 7 C -0.163 4.163 8 C -0.106 4.106 9 C 0.323 3.677 10 O -0.488 6.488 11 N -0.318 5.318 12 C -0.073 4.073 13 C 0.160 3.840 14 H 0.024 0.976 15 C -0.192 4.192 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.794 3.206 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.183 1.183 24 C -0.146 4.146 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.184 0.816 31 H 0.192 0.808 32 H 0.183 0.817 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.210 -21.778 -3.236 23.865 hybrid contribution 0.536 0.922 0.624 1.236 sum -8.674 -20.856 -2.611 22.738 Atomic orbital electron populations 1.21827 0.91848 1.04286 1.02903 1.23159 0.96754 0.80360 1.02882 1.86089 1.18435 1.32038 1.88739 1.18793 0.83325 0.93316 0.97508 1.21804 0.94382 0.98566 1.04783 1.21389 0.94705 0.97224 0.95956 1.22453 1.02202 0.91636 1.00050 1.19639 0.93705 0.92598 1.04703 1.19001 0.81983 0.89050 0.77699 1.90677 1.61173 1.45384 1.51592 1.48110 1.11899 1.13442 1.58354 1.22513 0.96925 0.89240 0.98598 1.18604 0.91863 0.79311 0.94254 0.97620 1.21890 0.98496 1.02861 0.95966 1.21543 1.10169 0.95309 1.30866 0.91610 1.25791 1.00955 0.94649 0.97184 1.70033 1.40661 0.99722 1.45363 0.85445 0.78908 0.77454 0.78831 1.21029 1.20217 1.18321 1.20344 0.93853 0.96090 1.04274 0.87649 0.92345 0.92181 0.90209 0.90485 0.81554 0.80756 0.81655 0.90789 0.88018 0.90937 0.96439 0.91139 0.92894 0.92581 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.04 0.60 5.46 71.98 0.39 1.00 16 3 O -0.34 -8.39 10.13 -92.57 -0.94 -9.33 16 4 C 0.12 3.10 6.68 22.47 0.15 3.25 16 5 C -0.18 -3.34 9.03 22.42 0.20 -3.14 16 6 C -0.08 -1.38 10.03 22.22 0.22 -1.16 16 7 C -0.15 -3.79 7.61 22.53 0.17 -3.62 16 8 C -0.10 -3.72 5.57 -20.10 -0.11 -3.83 16 9 C 0.53 24.98 7.52 86.79 0.65 25.63 16 10 O -0.60 -34.33 15.88 -3.89 -0.06 -34.39 16 11 N -0.59 -26.57 2.75 -830.20 -2.29 -28.85 16 12 C 0.07 2.20 7.92 127.77 1.01 3.21 16 13 C 0.26 14.18 2.63 44.24 0.12 14.30 16 14 H 0.01 0.38 6.92 -2.39 -0.02 0.36 16 15 C -0.13 -6.68 8.94 71.98 0.64 -6.04 16 16 C -0.54 -29.78 8.37 25.60 0.21 -29.56 16 17 H 0.07 3.45 7.54 -2.90 -0.02 3.42 16 18 C 0.01 0.76 5.30 84.65 0.45 1.21 16 19 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 20 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 C -0.13 -4.38 9.53 22.63 0.22 -4.16 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.08 0.83 7.66 -2.39 -0.02 0.81 16 29 H 0.08 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.17 1.82 6.28 -2.91 -0.02 1.80 16 31 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.17 3.91 4.03 -2.91 -0.01 3.90 16 33 H 0.07 2.14 6.89 -2.39 -0.02 2.12 16 34 H 0.10 2.62 5.25 -2.39 -0.01 2.61 16 35 H 0.07 2.30 6.44 -2.39 -0.02 2.29 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 38 H 0.05 2.35 6.68 -2.39 -0.02 2.34 16 39 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 40 H 0.11 4.33 7.79 -2.91 -0.02 4.31 16 Total: -1.00 -76.31 323.95 5.10 -71.21 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.05 Total: 13.78 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.07 Total: -3.91 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -2.04 Total: -82.49 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.00 Total: -43.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -76.31 5.10 -71.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069849246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.830 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds