Wall clock time and date at job start Mon Mar 30 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00141 * 2 1 4 4 C 1.38738 * 120.05530 * 179.97438 * 3 2 1 5 5 C 1.38136 * 119.94179 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05854 * 0.02599 * 5 4 3 7 7 C 1.50707 * 119.94636 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47011 * 89.99722 * 7 6 5 9 9 O 1.21274 * 120.00413 * 0.27295 * 8 7 6 10 10 N 1.34784 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47277 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46913 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00408 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99553 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00389 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47207 * 90.00219 * 18 16 14 20 20 H 1.48501 * 109.47218 * 209.99776 * 18 16 14 21 21 H 1.48495 * 109.47413 * 330.00022 * 18 16 14 22 22 C 1.38268 * 120.11540 * 0.24446 * 6 5 4 23 23 C 1.38155 * 120.05028 * 359.46111 * 22 6 5 24 24 H 1.09002 * 109.46800 * 300.00159 * 1 2 3 25 25 H 1.09008 * 109.47083 * 59.99339 * 1 2 3 26 26 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.02476 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.97177 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.46877 * 329.99596 * 7 6 5 30 30 H 1.09002 * 109.46993 * 209.99942 * 7 6 5 31 31 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 33 33 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 34 34 H 1.09004 * 109.47330 * 300.00096 * 12 11 10 35 35 H 1.09005 * 109.47124 * 59.99892 * 12 11 10 36 36 H 1.08997 * 109.46785 * 299.99511 * 13 12 11 37 37 H 1.08992 * 109.47085 * 59.99748 * 13 12 11 38 38 H 0.97005 * 120.00528 * 180.02562 * 17 16 14 39 39 H 1.07992 * 119.97872 * 179.70106 * 22 6 5 40 40 H 1.07997 * 120.02547 * 180.24971 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2148 5.4670 -1.4176 9 8 3.8529 4.7677 -2.3400 10 7 4.8170 6.6476 -1.6628 11 6 5.0397 7.0835 -3.0436 12 6 5.7353 8.4461 -3.0424 13 6 5.9674 8.9016 -4.4846 14 6 6.6532 10.2435 -4.4833 15 1 6.8985 10.7237 -3.5476 16 6 6.9673 10.8582 -5.6768 17 7 6.6681 10.2737 -6.8163 18 14 7.8167 12.5219 -5.6753 19 1 9.2888 12.3262 -5.6746 20 1 7.4191 13.2818 -6.8876 21 1 7.4176 13.2804 -4.4626 22 6 1.9212 3.6048 0.0067 23 6 1.2915 2.3751 0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0208 0.3799 0.0005 28 1 5.1346 2.5749 0.0019 29 1 4.9440 4.9378 0.5170 30 1 3.3580 5.7459 0.5169 31 1 5.1035 7.2084 -0.9250 32 1 5.6678 6.3557 -3.5575 33 1 4.0821 7.1644 -3.5581 34 1 5.1076 9.1741 -2.5284 35 1 6.6930 8.3647 -2.5281 36 1 6.5950 8.1738 -4.9988 37 1 5.0097 8.9830 -4.9984 38 1 6.8895 10.7060 -7.6560 39 1 1.3343 4.5114 0.0120 40 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:11 Heat of formation + Delta-G solvation = -71.040113 kcal Electronic energy + Delta-G solvation = -19960.906842 eV Core-core repulsion = 16740.207970 eV Total energy + Delta-G solvation = -3220.698872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42597 -39.43013 -37.61215 -35.36104 -33.31455 -32.43490 -31.25791 -31.07310 -28.40143 -27.19919 -25.98017 -23.15028 -22.81572 -21.56805 -20.69980 -19.81489 -18.36363 -16.83882 -16.54987 -16.46578 -15.96233 -15.86389 -15.35225 -14.98906 -14.49820 -14.37699 -14.19790 -13.79353 -13.55337 -13.50574 -12.69960 -12.33292 -12.28916 -12.11818 -11.89193 -11.68078 -11.57886 -11.24037 -10.97521 -10.90638 -10.73300 -10.60077 -9.86988 -9.86228 -9.37573 -9.13178 -9.12061 -8.75105 -8.37891 -8.24771 -6.02338 -4.05577 1.21194 1.24892 2.82270 3.03916 3.30230 3.34093 3.36849 3.39733 3.76461 4.43724 4.55359 4.58473 4.69647 4.80379 4.85074 5.04744 5.07289 5.14745 5.19173 5.31614 5.33322 5.43089 5.54119 5.74042 5.78317 5.87106 6.08671 6.16702 6.17894 6.46244 6.50249 6.58940 6.60006 6.84188 7.00482 7.18219 7.63015 7.74177 7.75632 7.96383 8.36877 8.44616 9.01181 9.58604 11.08911 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051949 B = 0.002280 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.860899 B =12278.296376 C =12442.001324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.150 4.150 5 C -0.066 4.066 6 C -0.098 4.098 7 C -0.100 4.100 8 C 0.506 3.494 9 O -0.536 6.536 10 N -0.729 5.729 11 C 0.117 3.883 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.065 4.065 23 C -0.206 4.206 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.398 0.602 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 -16.648 18.454 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.084 4.084 6 C -0.099 4.099 7 C -0.139 4.139 8 C 0.291 3.709 9 O -0.412 6.412 10 N -0.380 5.380 11 C -0.006 4.006 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.083 4.083 23 C -0.225 4.225 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.232 0.768 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.462 -17.319 17.568 26.796 hybrid contribution 0.349 1.408 0.138 1.457 sum -10.113 -15.911 17.705 25.863 Atomic orbital electron populations 1.23043 0.78498 1.03814 1.01402 1.86054 1.21327 1.27122 1.88867 1.19025 0.92399 0.84044 0.96794 1.20359 0.91336 0.98552 1.06617 1.20798 0.99753 0.90995 0.96814 1.19204 0.93463 0.93845 1.03391 1.20637 1.02623 0.95471 0.95214 1.20542 0.77918 0.81318 0.91084 1.90724 1.50168 1.54137 1.46218 1.46234 1.60961 1.20730 1.10059 1.21626 1.00700 0.97320 0.80968 1.21884 0.98768 0.92885 1.02306 1.19033 0.97254 0.96155 0.89002 1.21202 1.38641 1.03917 0.92309 0.92637 1.25040 0.95960 0.97862 0.95675 1.69966 1.47338 1.38672 0.97288 0.86575 0.79791 0.83998 0.77504 1.20657 1.21210 1.19900 1.20768 0.93827 0.97090 0.96650 1.21158 0.99883 0.92294 1.09161 0.92716 0.92586 0.88336 0.85251 0.85413 0.88075 0.88146 0.76843 0.91871 0.91886 0.92754 0.92735 0.96291 0.96293 0.92917 0.85893 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.38 10.50 -19.43 -0.20 -3.59 16 3 C 0.12 1.40 6.69 -39.21 -0.26 1.14 16 4 C -0.15 -1.69 9.99 -39.43 -0.39 -2.08 16 5 C -0.07 -0.73 9.69 -39.61 -0.38 -1.11 16 6 C -0.10 -1.12 4.37 -104.60 -0.46 -1.57 16 7 C -0.10 -0.97 5.83 -29.03 -0.17 -1.14 16 8 C 0.51 7.23 7.82 -10.98 -0.09 7.14 16 9 O -0.54 -10.14 16.03 5.56 0.09 -10.05 16 10 N -0.73 -10.08 5.56 -60.30 -0.33 -10.41 16 11 C 0.12 2.05 5.67 -4.05 -0.02 2.03 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 C -0.07 -0.72 9.69 -39.60 -0.38 -1.10 16 23 C -0.21 -2.19 9.04 -39.43 -0.36 -2.54 16 24 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 25 H 0.06 0.35 7.66 -51.92 -0.40 -0.05 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.40 4.24 8.47 -40.82 -0.35 3.90 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.13 1.05 6.30 -52.49 -0.33 0.71 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -34.42 343.13 -7.86 -42.28 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.08 Total: -0.21 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.21 Total: -13.49 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.40 Total: -36.55 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.11 Total: -13.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.42 -7.86 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.762 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds