Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00141 * 2 1 4 4 C 1.38738 * 120.05530 * 179.97438 * 3 2 1 5 5 C 1.38136 * 119.94179 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05854 * 0.02599 * 5 4 3 7 7 C 1.50707 * 119.94636 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47011 * 89.99722 * 7 6 5 9 9 O 1.21274 * 120.00413 * 0.27295 * 8 7 6 10 10 N 1.34784 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47277 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46913 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00408 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99553 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00389 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47207 * 90.00219 * 18 16 14 20 20 H 1.48501 * 109.47218 * 209.99776 * 18 16 14 21 21 H 1.48495 * 109.47413 * 330.00022 * 18 16 14 22 22 C 1.38268 * 120.11540 * 0.24446 * 6 5 4 23 23 C 1.38155 * 120.05028 * 359.46111 * 22 6 5 24 24 H 1.09002 * 109.46800 * 300.00159 * 1 2 3 25 25 H 1.09008 * 109.47083 * 59.99339 * 1 2 3 26 26 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.02476 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.97177 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.46877 * 329.99596 * 7 6 5 30 30 H 1.09002 * 109.46993 * 209.99942 * 7 6 5 31 31 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 33 33 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 34 34 H 1.09004 * 109.47330 * 300.00096 * 12 11 10 35 35 H 1.09005 * 109.47124 * 59.99892 * 12 11 10 36 36 H 1.08997 * 109.46785 * 299.99511 * 13 12 11 37 37 H 1.08992 * 109.47085 * 59.99748 * 13 12 11 38 38 H 0.97005 * 120.00528 * 180.02562 * 17 16 14 39 39 H 1.07992 * 119.97872 * 179.70106 * 22 6 5 40 40 H 1.07997 * 120.02547 * 180.24971 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2148 5.4670 -1.4176 9 8 3.8529 4.7677 -2.3400 10 7 4.8170 6.6476 -1.6628 11 6 5.0397 7.0835 -3.0436 12 6 5.7353 8.4461 -3.0424 13 6 5.9674 8.9016 -4.4846 14 6 6.6532 10.2435 -4.4833 15 1 6.8985 10.7237 -3.5476 16 6 6.9673 10.8582 -5.6768 17 7 6.6681 10.2737 -6.8163 18 14 7.8167 12.5219 -5.6753 19 1 9.2888 12.3262 -5.6746 20 1 7.4191 13.2818 -6.8876 21 1 7.4176 13.2804 -4.4626 22 6 1.9212 3.6048 0.0067 23 6 1.2915 2.3751 0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0208 0.3799 0.0005 28 1 5.1346 2.5749 0.0019 29 1 4.9440 4.9378 0.5170 30 1 3.3580 5.7459 0.5169 31 1 5.1035 7.2084 -0.9250 32 1 5.6678 6.3557 -3.5575 33 1 4.0821 7.1644 -3.5581 34 1 5.1076 9.1741 -2.5284 35 1 6.6930 8.3647 -2.5281 36 1 6.5950 8.1738 -4.9988 37 1 5.0097 8.9830 -4.9984 38 1 6.8895 10.7060 -7.6560 39 1 1.3343 4.5114 0.0120 40 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -93.619316 kcal Electronic energy + Delta-G solvation = -19961.885950 eV Core-core repulsion = 16740.207970 eV Total energy + Delta-G solvation = -3221.677980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26023 -40.49316 -38.43008 -36.89156 -35.16073 -33.48252 -32.70610 -31.99600 -29.35968 -28.40136 -27.16670 -24.86500 -23.61845 -22.50902 -22.28823 -21.05248 -19.10439 -18.55608 -17.88402 -17.32362 -17.06057 -16.63056 -16.61693 -16.48430 -15.91748 -15.53734 -15.13917 -14.75968 -14.62287 -14.37041 -14.23365 -13.75733 -13.57521 -13.43168 -12.92855 -12.77151 -12.67520 -12.54418 -12.49034 -12.34472 -11.94184 -11.70557 -11.66078 -11.57450 -11.23611 -10.81055 -10.55607 -10.04425 -9.92837 -9.05327 -8.19452 -6.31158 0.40852 0.42888 1.41933 1.43391 1.54380 1.72008 2.26833 2.39284 2.43301 2.87522 3.14190 3.75965 3.84638 3.96669 4.08152 4.21272 4.25298 4.26908 4.37754 4.41700 4.44528 4.56623 4.60128 4.69345 4.74760 4.80141 4.95613 5.02964 5.10273 5.17977 5.30349 5.38617 5.47519 5.55268 5.65804 5.70972 5.83386 5.84350 6.22159 6.45018 6.66862 6.86850 7.35656 7.38668 8.92653 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051949 B = 0.002280 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.860899 B =12278.296376 C =12442.001324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.168 4.168 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.087 4.087 8 C 0.505 3.495 9 O -0.588 6.588 10 N -0.716 5.716 11 C 0.130 3.870 12 C -0.101 4.101 13 C 0.022 3.978 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.006 4.006 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.259 1.259 22 C -0.077 4.077 23 C -0.214 4.214 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.418 0.582 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.069 0.931 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.263 0.737 39 H 0.138 0.862 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 -15.650 20.793 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.186 4.186 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.126 4.126 8 C 0.293 3.707 9 O -0.468 6.468 10 N -0.369 5.369 11 C 0.006 3.994 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.183 1.183 22 C -0.095 4.095 23 C -0.232 4.232 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.137 0.863 27 H 0.155 0.845 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.255 0.745 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.156 0.844 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.375 -16.309 19.964 27.788 hybrid contribution 0.260 1.012 -0.607 1.208 sum -10.114 -15.297 19.357 26.665 Atomic orbital electron populations 1.23322 0.76610 1.05518 1.02107 1.86029 1.23382 1.26959 1.88815 1.19254 0.92775 0.84682 0.96924 1.20613 0.91803 0.99163 1.07061 1.21065 1.00637 0.91048 0.96616 1.19473 0.93857 0.94600 1.03673 1.20669 1.04764 0.95202 0.91983 1.21374 0.76387 0.80381 0.92573 1.90711 1.52226 1.55553 1.48297 1.46002 1.60825 1.21175 1.08875 1.21171 0.99152 0.95989 0.83122 1.21589 1.00052 0.93905 0.98323 1.18959 0.94989 0.95172 0.92459 1.21689 1.38428 1.04778 0.92892 0.91385 1.26059 0.96758 1.02240 0.95281 1.70117 1.48764 1.40694 0.98062 0.85393 0.78637 0.78759 0.77916 1.19825 1.21124 1.18305 1.21080 0.94168 0.97835 0.96423 1.21426 1.00985 0.92041 1.08765 0.91444 0.92374 0.86257 0.84548 0.84061 0.85005 0.85022 0.74528 0.93689 0.93671 0.91242 0.91227 0.99148 0.99122 0.92838 0.84428 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.00 10.50 -92.45 -0.97 -7.97 16 3 C 0.11 2.45 6.69 22.51 0.15 2.60 16 4 C -0.17 -3.75 9.99 22.37 0.22 -3.53 16 5 C -0.08 -1.62 9.69 22.25 0.22 -1.40 16 6 C -0.12 -2.43 4.37 -19.85 -0.09 -2.52 16 7 C -0.09 -1.44 5.83 29.10 0.17 -1.27 16 8 C 0.50 13.62 7.82 87.65 0.69 14.30 16 9 O -0.59 -22.24 16.03 -3.01 -0.05 -22.29 16 10 N -0.72 -18.43 5.56 -463.07 -2.57 -21.00 16 11 C 0.13 4.56 5.67 86.38 0.49 5.05 16 12 C -0.10 -3.83 5.27 30.59 0.16 -3.66 16 13 C 0.02 1.14 4.97 29.85 0.15 1.29 16 14 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 17 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 18 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 22 C -0.08 -1.59 9.69 22.26 0.22 -1.37 16 23 C -0.21 -4.34 9.04 22.37 0.20 -4.14 16 24 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 25 H 0.06 0.66 7.66 -2.38 -0.02 0.65 16 26 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.13 1.41 8.08 -2.38 -0.02 1.39 16 30 H 0.13 1.40 8.08 -2.39 -0.02 1.38 16 31 H 0.42 7.51 8.47 -92.71 -0.79 6.73 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.26 15.17 8.31 -92.70 -0.77 14.39 16 39 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 Total: -1.00 -76.34 343.13 3.35 -73.00 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.24 Total: 12.69 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.38 Total: -23.00 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.29 Total: -78.16 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.02 Total: -30.26 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -76.34 3.35 -73.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.622 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds