Wall clock time and date at job start Mon Mar 30 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.46715 * 2 1 4 4 C 1.42903 * 113.99690 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47042 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47316 * 184.30250 * 5 4 3 7 7 O 1.21294 * 119.99613 * 4.88677 * 6 5 4 8 8 N 1.34778 * 120.00331 * 184.88951 * 6 5 4 9 9 C 1.37099 * 119.99776 * 5.25709 * 8 6 5 10 10 H 1.07994 * 120.00203 * 39.12241 * 9 8 6 11 11 C 1.38947 * 119.99445 * 219.12606 * 9 8 6 12 12 N 1.31412 * 119.99735 * 212.05713 * 11 9 8 13 13 Si 1.86802 * 120.00297 * 32.06007 * 11 9 8 14 14 H 1.48506 * 109.46952 * 92.54674 * 13 11 9 15 15 H 1.48505 * 109.47058 * 212.54140 * 13 11 9 16 16 H 1.48488 * 109.46990 * 332.54496 * 13 11 9 17 17 C 1.46497 * 120.00082 * 185.25146 * 8 6 5 18 18 C 1.50697 * 109.47236 * 275.05224 * 17 8 6 19 19 C 1.38243 * 119.99781 * 90.00117 * 18 17 8 20 20 C 1.38233 * 119.99553 * 179.97438 * 19 18 17 21 21 C 1.38230 * 120.00334 * 359.97273 * 20 19 18 22 22 C 1.38230 * 119.99989 * 0.28337 * 21 20 19 23 23 C 1.38233 * 120.00292 * 269.97632 * 18 17 8 24 24 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46964 * 299.99940 * 1 2 3 26 26 H 1.08993 * 109.47272 * 59.99999 * 1 2 3 27 27 H 1.08991 * 109.46990 * 240.00296 * 2 1 3 28 28 H 1.08995 * 109.46807 * 119.99767 * 2 1 3 29 29 H 1.09001 * 109.47234 * 59.99918 * 4 3 2 30 30 H 1.08997 * 109.47222 * 299.99749 * 4 3 2 31 31 H 1.08994 * 109.47184 * 64.30121 * 5 4 3 32 32 H 1.09006 * 109.47033 * 304.30170 * 5 4 3 33 33 H 0.97009 * 120.00123 * 180.02562 * 12 11 9 34 34 H 1.08999 * 109.46789 * 155.05172 * 17 8 6 35 35 H 1.08998 * 109.46917 * 35.05323 * 17 8 6 36 36 H 1.08002 * 120.00370 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.99598 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.99694 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.99753 * 179.72218 * 22 21 20 40 40 H 1.07994 * 119.99805 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 6 5.3237 3.0585 -0.1084 7 8 6.0019 2.0654 -0.2667 8 7 5.9102 4.2694 -0.0283 9 6 5.1568 5.3784 0.2579 10 1 4.3603 5.3173 0.9846 11 6 5.4179 6.5810 -0.3872 12 7 5.2127 7.7193 0.2366 13 14 6.0608 6.5798 -2.1411 14 1 4.9191 6.6688 -3.0868 15 1 6.9598 7.7451 -2.3396 16 1 6.8142 5.3250 -2.3913 17 6 7.3528 4.4004 -0.2471 18 6 8.0837 4.1202 1.0407 19 6 8.4807 2.8312 1.3438 20 6 9.1515 2.5744 2.5248 21 6 9.4259 3.6064 3.4025 22 6 9.0242 4.8945 3.1019 23 6 8.3575 5.1522 1.9187 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9768 -0.8908 30 1 3.8340 0.9766 0.8891 31 1 3.4888 3.4046 0.9248 32 1 3.3591 3.4386 -0.8501 33 1 5.3946 8.5590 -0.2139 34 1 7.5792 5.4131 -0.5804 35 1 7.6711 3.6877 -1.0079 36 1 8.2668 2.0248 0.6579 37 1 9.4621 1.5673 2.7614 38 1 9.9497 3.4056 4.3254 39 1 9.2346 5.7001 3.7897 40 1 8.0474 6.1592 1.6819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076797011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:05 Heat of formation + Delta-G solvation = -56.308512 kcal Electronic energy + Delta-G solvation = -21552.592337 eV Core-core repulsion = 18332.532275 eV Total energy + Delta-G solvation = -3220.060062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.33840 -38.24587 -37.50386 -35.00716 -32.37655 -32.03033 -31.00454 -30.30937 -29.61386 -25.98625 -24.93189 -22.76214 -22.55758 -21.94535 -20.80663 -18.97001 -17.17590 -16.78107 -16.07980 -15.98547 -15.52338 -15.31547 -14.71455 -14.37215 -14.33750 -13.89754 -13.69094 -13.37538 -12.84426 -12.71177 -12.57643 -12.42130 -12.16680 -11.90316 -11.55022 -11.43974 -11.37472 -11.04557 -10.89774 -10.68643 -10.60714 -10.42342 -10.25302 -9.97301 -9.29582 -9.23916 -8.70957 -8.34764 -8.14242 -7.83568 -6.62557 -4.11289 1.87404 1.98032 3.05546 3.18621 3.25231 3.68731 3.76285 4.08971 4.26814 4.71934 4.90255 5.10259 5.26215 5.39399 5.42099 5.43000 5.52089 5.63093 5.66047 5.69125 5.76360 5.91623 5.94321 5.95420 6.10305 6.12205 6.18584 6.30993 6.41381 6.53837 6.56331 6.59793 6.65793 7.01369 7.02817 7.25239 7.33251 7.50798 7.57945 8.00229 8.21066 8.90133 9.28722 9.64436 10.47769 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.006179 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.973069 B = 4530.048865 C = 6027.078347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.393 6.393 4 C 0.080 3.920 5 C -0.115 4.115 6 C 0.483 3.517 7 O -0.600 6.600 8 N -0.451 5.451 9 C -0.355 4.355 10 H 0.102 0.898 11 C 0.080 3.920 12 N -0.837 5.837 13 Si 0.850 3.150 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.256 1.256 17 C 0.151 3.849 18 C -0.086 4.086 19 C -0.097 4.097 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.092 4.092 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.276 0.724 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -8.208 1.302 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.313 6.313 4 C 0.003 3.997 5 C -0.155 4.155 6 C 0.273 3.727 7 O -0.486 6.486 8 N -0.170 5.170 9 C -0.482 4.482 10 H 0.119 0.881 11 C -0.130 4.130 12 N -0.470 5.470 13 Si 0.675 3.325 14 H -0.200 1.200 15 H -0.206 1.206 16 H -0.180 1.180 17 C 0.029 3.971 18 C -0.088 4.088 19 C -0.115 4.115 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.110 4.110 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.750 -8.269 1.229 8.394 hybrid contribution 0.328 0.187 -0.758 0.847 sum 1.079 -8.082 0.471 8.167 Atomic orbital electron populations 1.21739 0.94134 1.01782 1.03096 1.22379 0.95190 0.84443 0.99855 1.87841 1.22177 1.25784 1.95491 1.22217 0.79416 0.97233 1.00794 1.21171 0.94083 0.95039 1.05225 1.20230 0.89367 0.83421 0.79690 1.90511 1.65756 1.37127 1.55172 1.43629 1.04252 1.06845 1.62320 1.18950 1.18385 0.86400 1.24422 0.88083 1.25317 0.95272 0.94748 0.97694 1.69943 1.43078 0.98177 1.35782 0.87360 0.79640 0.78836 0.86687 1.20036 1.20650 1.17957 1.20626 0.82337 1.01035 0.93150 1.20368 0.97111 0.93373 0.97926 1.21254 0.96598 0.96716 0.96981 1.21042 1.00627 0.98495 0.95130 1.21011 1.01292 0.93336 0.99222 1.21057 1.00014 0.96574 0.97296 1.21180 0.96589 0.99686 0.93579 0.91491 0.91913 0.91921 0.93688 0.93710 0.92801 0.93343 0.89073 0.88682 0.91402 0.90735 0.91051 0.85465 0.86922 0.87024 0.86709 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.75 6.66 37.16 0.25 1.00 16 3 O -0.39 -6.63 10.34 -35.23 -0.36 -7.00 16 4 C 0.08 1.43 5.32 37.16 0.20 1.63 16 5 C -0.12 -2.30 4.97 -27.88 -0.14 -2.44 16 6 C 0.48 10.95 7.57 -10.98 -0.08 10.86 16 7 O -0.60 -14.14 14.13 5.55 0.08 -14.07 16 8 N -0.45 -10.58 2.11 -116.10 -0.24 -10.82 16 9 C -0.36 -8.90 8.87 -14.93 -0.13 -9.03 16 10 H 0.10 2.69 7.17 -52.49 -0.38 2.31 16 11 C 0.08 2.00 5.02 -17.47 -0.09 1.91 16 12 N -0.84 -21.95 13.96 55.50 0.77 -21.17 16 13 Si 0.85 19.12 26.39 -169.99 -4.49 14.64 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.26 -5.65 5.81 56.52 0.33 -5.33 16 17 C 0.15 3.33 3.64 -5.20 -0.02 3.31 16 18 C -0.09 -1.78 5.42 -104.62 -0.57 -2.34 16 19 C -0.10 -1.86 9.22 -39.58 -0.36 -2.22 16 20 C -0.13 -2.24 10.05 -39.59 -0.40 -2.64 16 21 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 22 C -0.13 -2.22 10.05 -39.59 -0.40 -2.62 16 23 C -0.09 -1.80 9.70 -39.58 -0.38 -2.18 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.96 7.91 -51.93 -0.41 0.55 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.83 7.33 -51.93 -0.38 1.45 16 32 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 33 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.07 1.64 4.66 -51.93 -0.24 1.40 16 35 H 0.07 1.55 7.60 -51.93 -0.39 1.15 16 36 H 0.13 2.51 7.06 -52.49 -0.37 2.14 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 38 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -27.74 333.02 -7.40 -35.14 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.03 Total: 6.70 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -2.14 Total: -8.44 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.53 Total: -32.00 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.29 Total: -21.06 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.49 Total: 14.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.74 -7.40 -35.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076797011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.169 kcal (2) G-P(sol) polarization free energy of solvation -27.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds