Wall clock time and date at job start Mon Mar 30 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.46715 * 2 1 4 4 C 1.42903 * 113.99690 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47042 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47316 * 184.30250 * 5 4 3 7 7 O 1.21294 * 119.99613 * 4.88677 * 6 5 4 8 8 N 1.34778 * 120.00331 * 184.88951 * 6 5 4 9 9 C 1.37099 * 119.99776 * 5.25709 * 8 6 5 10 10 H 1.07994 * 120.00203 * 39.12241 * 9 8 6 11 11 C 1.38947 * 119.99445 * 219.12606 * 9 8 6 12 12 N 1.31412 * 119.99735 * 212.05713 * 11 9 8 13 13 Si 1.86802 * 120.00297 * 32.06007 * 11 9 8 14 14 H 1.48506 * 109.46952 * 92.54674 * 13 11 9 15 15 H 1.48505 * 109.47058 * 212.54140 * 13 11 9 16 16 H 1.48488 * 109.46990 * 332.54496 * 13 11 9 17 17 C 1.46497 * 120.00082 * 185.25146 * 8 6 5 18 18 C 1.50697 * 109.47236 * 275.05224 * 17 8 6 19 19 C 1.38243 * 119.99781 * 90.00117 * 18 17 8 20 20 C 1.38233 * 119.99553 * 179.97438 * 19 18 17 21 21 C 1.38230 * 120.00334 * 359.97273 * 20 19 18 22 22 C 1.38230 * 119.99989 * 0.28337 * 21 20 19 23 23 C 1.38233 * 120.00292 * 269.97632 * 18 17 8 24 24 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46964 * 299.99940 * 1 2 3 26 26 H 1.08993 * 109.47272 * 59.99999 * 1 2 3 27 27 H 1.08991 * 109.46990 * 240.00296 * 2 1 3 28 28 H 1.08995 * 109.46807 * 119.99767 * 2 1 3 29 29 H 1.09001 * 109.47234 * 59.99918 * 4 3 2 30 30 H 1.08997 * 109.47222 * 299.99749 * 4 3 2 31 31 H 1.08994 * 109.47184 * 64.30121 * 5 4 3 32 32 H 1.09006 * 109.47033 * 304.30170 * 5 4 3 33 33 H 0.97009 * 120.00123 * 180.02562 * 12 11 9 34 34 H 1.08999 * 109.46789 * 155.05172 * 17 8 6 35 35 H 1.08998 * 109.46917 * 35.05323 * 17 8 6 36 36 H 1.08002 * 120.00370 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.99598 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.99694 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.99753 * 179.72218 * 22 21 20 40 40 H 1.07994 * 119.99805 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 6 5.3237 3.0585 -0.1084 7 8 6.0019 2.0654 -0.2667 8 7 5.9102 4.2694 -0.0283 9 6 5.1568 5.3784 0.2579 10 1 4.3603 5.3173 0.9846 11 6 5.4179 6.5810 -0.3872 12 7 5.2127 7.7193 0.2366 13 14 6.0608 6.5798 -2.1411 14 1 4.9191 6.6688 -3.0868 15 1 6.9598 7.7451 -2.3396 16 1 6.8142 5.3250 -2.3913 17 6 7.3528 4.4004 -0.2471 18 6 8.0837 4.1202 1.0407 19 6 8.4807 2.8312 1.3438 20 6 9.1515 2.5744 2.5248 21 6 9.4259 3.6064 3.4025 22 6 9.0242 4.8945 3.1019 23 6 8.3575 5.1522 1.9187 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9768 -0.8908 30 1 3.8340 0.9766 0.8891 31 1 3.4888 3.4046 0.9248 32 1 3.3591 3.4386 -0.8501 33 1 5.3946 8.5590 -0.2139 34 1 7.5792 5.4131 -0.5804 35 1 7.6711 3.6877 -1.0079 36 1 8.2668 2.0248 0.6579 37 1 9.4621 1.5673 2.7614 38 1 9.9497 3.4056 4.3254 39 1 9.2346 5.7001 3.7897 40 1 8.0474 6.1592 1.6819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076797011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:05 Heat of formation + Delta-G solvation = -70.807472 kcal Electronic energy + Delta-G solvation = -21553.221059 eV Core-core repulsion = 18332.532275 eV Total energy + Delta-G solvation = -3220.688784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02999 -39.71248 -38.84072 -36.82488 -34.17101 -33.49460 -32.43377 -31.70202 -30.93793 -27.61292 -26.80616 -24.19409 -23.64812 -23.35353 -22.27627 -20.83518 -18.89895 -18.33318 -17.53141 -17.34989 -17.16914 -16.93015 -16.25755 -15.88608 -15.80658 -15.46622 -15.14512 -14.83775 -14.44170 -14.23686 -14.11657 -13.88599 -13.45640 -13.17937 -13.13683 -12.87076 -12.84925 -12.68055 -12.45427 -12.08839 -11.95838 -11.90198 -11.85257 -11.68117 -11.11260 -10.57599 -10.52086 -9.76313 -9.71197 -9.60371 -8.59047 -6.09709 0.46280 0.57377 1.23032 1.34306 1.42488 1.86522 2.19050 2.34833 2.76852 2.99407 3.25887 3.94036 4.01023 4.06833 4.11279 4.20141 4.20862 4.27001 4.36302 4.36861 4.45041 4.50368 4.57293 4.63382 4.77835 4.81243 4.88298 4.93736 5.00563 5.05783 5.16151 5.23788 5.28600 5.38461 5.63836 5.64900 5.84704 6.06674 6.19420 6.23543 6.26484 6.95721 7.39856 7.77424 8.54924 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.006179 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.973069 B = 4530.048865 C = 6027.078347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.410 6.410 4 C 0.093 3.907 5 C -0.111 4.111 6 C 0.478 3.522 7 O -0.609 6.609 8 N -0.458 5.458 9 C -0.355 4.355 10 H 0.077 0.923 11 C 0.051 3.949 12 N -0.870 5.870 13 Si 0.900 3.100 14 H -0.274 1.274 15 H -0.273 1.273 16 H -0.253 1.253 17 C 0.151 3.849 18 C -0.109 4.109 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.113 4.113 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.281 0.719 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -9.601 2.016 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.331 6.331 4 C 0.016 3.984 5 C -0.151 4.151 6 C 0.268 3.732 7 O -0.495 6.495 8 N -0.178 5.178 9 C -0.482 4.482 10 H 0.094 0.906 11 C -0.157 4.157 12 N -0.505 5.505 13 Si 0.723 3.277 14 H -0.200 1.200 15 H -0.198 1.198 16 H -0.177 1.177 17 C 0.028 3.972 18 C -0.110 4.110 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.131 4.131 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.473 -9.672 1.938 9.974 hybrid contribution 0.111 0.549 -0.887 1.049 sum 1.584 -9.123 1.051 9.319 Atomic orbital electron populations 1.21762 0.92273 1.03559 1.02752 1.22716 0.96731 0.82700 1.00825 1.87818 1.21160 1.28468 1.95609 1.21969 0.80377 0.95317 1.00707 1.21121 0.92279 0.96868 1.04799 1.20656 0.90426 0.83032 0.79036 1.90492 1.66319 1.37227 1.55504 1.43712 1.04896 1.06615 1.62580 1.18732 1.18295 0.87103 1.24037 0.90557 1.25739 0.95612 0.94301 1.00066 1.69978 1.44682 0.98786 1.37018 0.86569 0.79236 0.79086 0.82764 1.20042 1.19787 1.17715 1.20608 0.81761 1.00503 0.94324 1.20283 0.98546 0.94493 0.97706 1.21249 0.97850 0.95689 0.98254 1.21413 0.99105 1.00430 0.93865 1.21464 0.99909 0.92196 1.00168 1.21385 0.98742 0.98265 0.96387 1.21152 0.98264 0.98635 0.95086 0.88646 0.92282 0.92246 0.92697 0.92736 0.92885 0.93333 0.89670 0.88766 0.90888 0.91361 0.91375 0.86607 0.83815 0.82893 0.84108 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.28 71.98 0.74 -2.09 16 2 C 0.05 1.13 6.66 71.98 0.48 1.61 16 3 O -0.41 -13.58 10.34 -148.98 -1.54 -15.12 16 4 C 0.09 3.30 5.32 71.98 0.38 3.68 16 5 C -0.11 -4.50 4.97 29.85 0.15 -4.35 16 6 C 0.48 21.99 7.57 87.66 0.66 22.66 16 7 O -0.61 -28.89 14.13 -3.07 -0.04 -28.94 16 8 N -0.46 -21.97 2.11 -639.62 -1.35 -23.32 16 9 C -0.35 -18.32 8.87 84.04 0.75 -17.57 16 10 H 0.08 4.25 7.17 -2.91 -0.02 4.23 16 11 C 0.05 2.58 5.02 84.93 0.43 3.01 16 12 N -0.87 -46.57 13.96 21.66 0.30 -46.26 16 13 Si 0.90 39.86 26.39 68.60 1.81 41.68 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.25 -11.04 5.81 99.48 0.58 -10.46 16 17 C 0.15 6.76 3.64 85.63 0.31 7.07 16 18 C -0.11 -4.53 5.42 -19.87 -0.11 -4.63 16 19 C -0.11 -4.21 9.22 22.27 0.21 -4.01 16 20 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 21 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 22 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 23 C -0.11 -4.42 9.70 22.27 0.22 -4.21 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.87 7.91 -2.39 -0.02 1.85 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 3.54 7.33 -2.39 -0.02 3.52 16 32 H 0.09 3.81 8.14 -2.38 -0.02 3.79 16 33 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 34 H 0.07 3.07 4.66 -2.39 -0.01 3.06 16 35 H 0.07 3.02 7.60 -2.39 -0.02 3.00 16 36 H 0.12 4.57 7.06 -2.91 -0.02 4.55 16 37 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -59.86 333.02 4.95 -54.91 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.88 Total: 26.63 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.88 Total: -9.58 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -1.04 Total: -69.58 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.58 Total: -44.05 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.81 Total: 41.68 kcal Total: -59.86 4.95 -54.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076797011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.901 kcal (2) G-P(sol) polarization free energy of solvation -59.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds