Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99601 * 2 1 4 4 C 1.50698 * 109.47165 * 270.00152 * 3 2 1 5 5 H 1.07993 * 120.00262 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99678 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00332 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00005 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46820 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47100 * 120.00010 * 8 6 4 11 11 H 1.48499 * 109.47205 * 240.00323 * 8 6 4 12 12 C 1.34771 * 119.99855 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99834 * 180.02562 * 12 2 1 14 14 C 1.50703 * 120.00433 * 359.97438 * 12 2 1 15 15 C 1.52995 * 109.47151 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47181 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.47386 * 180.02562 * 16 15 14 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 1.09005 * 109.46757 * 269.99648 * 1 2 3 25 25 H 1.09003 * 109.47320 * 29.99539 * 1 2 3 26 26 H 1.09000 * 109.46980 * 149.99823 * 1 2 3 27 27 H 1.08997 * 109.47167 * 30.00731 * 3 2 1 28 28 H 1.09005 * 109.46336 * 150.00025 * 3 2 1 29 29 H 0.97001 * 120.00560 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46805 * 59.99987 * 14 12 2 31 31 H 1.08993 * 109.46945 * 300.00151 * 14 12 2 32 32 H 1.08999 * 109.47370 * 60.00219 * 15 14 12 33 33 H 1.09006 * 109.47017 * 300.00060 * 15 14 12 34 34 H 1.08999 * 109.46920 * 59.99785 * 16 15 14 35 35 H 1.08998 * 109.47220 * 300.00155 * 16 15 14 36 36 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 37 37 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 39 39 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6726 7 7 3.5549 3.6172 -0.6730 8 14 3.4386 3.4166 -3.4338 9 1 2.8605 2.4167 -4.3672 10 1 2.8015 4.7375 -3.6674 11 1 4.9013 3.5244 -3.6668 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 6 1.6147 -4.9602 -0.0012 17 8 2.5434 -6.0464 -0.0006 18 6 2.0239 -7.3022 -0.0016 19 6 2.8679 -8.4032 -0.0016 20 6 2.3375 -9.6788 -0.0021 21 6 0.9666 -9.8586 -0.0031 22 6 0.1232 -8.7629 -0.0026 23 6 0.6487 -7.4854 -0.0021 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0316 4.4432 -0.8502 30 1 0.7584 -2.5299 -0.8903 31 1 0.7591 -2.5303 0.8896 32 1 3.0063 -3.5775 0.8895 33 1 3.0063 -3.5774 -0.8906 34 1 0.9884 -5.0177 -0.8914 35 1 0.9878 -5.0183 0.8885 36 1 3.9388 -8.2633 -0.0056 37 1 2.9941 -10.5362 -0.0025 38 1 0.5538 -10.8566 -0.0039 39 1 -0.9472 -8.9060 -0.0030 40 1 -0.0104 -6.6298 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078914537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = -57.683961 kcal Electronic energy + Delta-G solvation = -20300.121213 eV Core-core repulsion = 17080.001507 eV Total energy + Delta-G solvation = -3220.119706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27961 -39.03922 -37.63406 -34.89882 -33.70171 -32.55753 -31.24013 -30.07125 -28.33713 -26.89560 -25.61415 -23.59047 -22.73005 -22.14162 -21.11377 -18.70406 -18.10181 -16.64297 -16.55906 -16.36839 -16.13287 -15.67006 -15.23810 -14.99053 -14.64913 -14.20807 -13.71634 -13.69292 -13.46551 -12.79536 -12.58647 -12.28137 -12.10625 -12.05028 -11.90597 -11.75863 -11.47080 -11.33238 -11.18148 -10.91524 -10.84127 -10.61651 -10.58051 -10.16410 -9.61693 -9.25730 -8.92694 -8.44475 -8.41007 -7.65369 -6.04947 -4.09757 1.08774 1.21948 2.98184 3.29359 3.36317 3.39158 3.44387 3.55605 4.00076 4.44271 4.56119 4.63955 4.84364 4.85219 4.87203 5.02733 5.13359 5.14678 5.28764 5.31570 5.36128 5.40199 5.49682 5.55665 5.74968 5.78454 5.90267 6.07451 6.13460 6.16146 6.19409 6.27882 6.33691 6.55884 7.04543 7.27028 7.43853 7.53240 7.91484 8.22769 8.40620 8.89725 9.08662 9.55464 11.03189 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.002664 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.775091 B =10507.226604 C =10764.849161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.504 3.496 13 O -0.541 6.541 14 C -0.136 4.136 15 C -0.103 4.103 16 C 0.061 3.939 17 O -0.312 6.312 18 C 0.135 3.865 19 C -0.156 4.156 20 C -0.082 4.082 21 C -0.165 4.165 22 C -0.081 4.081 23 C -0.211 4.211 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 -22.863 2.540 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.418 6.418 14 C -0.176 4.176 15 C -0.141 4.141 16 C -0.014 4.014 17 O -0.225 6.225 18 C 0.089 3.911 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.183 4.183 22 C -0.099 4.099 23 C -0.230 4.230 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.726 -22.578 2.586 24.343 hybrid contribution -0.242 0.515 -0.989 1.141 sum -8.969 -22.063 1.597 23.870 Atomic orbital electron populations 1.21641 0.81480 1.02579 1.00380 1.48170 1.06174 1.07905 1.71388 1.19300 0.92588 0.78112 0.97535 1.21463 1.36419 1.06246 0.92302 0.92448 1.24951 0.95363 0.96420 0.97480 1.69941 1.38413 1.14358 1.30680 0.86435 0.78116 0.78277 0.84541 1.19814 1.20964 1.20839 1.20209 0.88107 0.85052 0.77645 1.90683 1.13912 1.87231 1.49997 1.21555 0.99024 0.93305 1.03729 1.21239 0.98097 0.89317 1.05467 1.22914 0.91906 0.85341 1.01247 1.86106 1.36340 1.12021 1.88035 1.19104 0.91942 0.84929 0.95128 1.20508 0.99998 0.90446 1.06463 1.20972 0.95304 0.96158 0.97549 1.21050 0.93609 0.98818 1.04850 1.20955 0.99773 0.91920 0.97265 1.21318 0.94028 0.98746 1.08930 0.93756 0.90783 0.92456 0.95010 0.93820 0.92755 0.89253 0.89422 0.90007 0.89903 0.91936 0.91977 0.85146 0.85474 0.86071 0.85895 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.24 59.85 0.61 1.89 16 2 N -0.60 -12.73 2.86 -182.95 -0.52 -13.25 16 3 C 0.24 6.42 5.16 -5.19 -0.03 6.40 16 4 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.50 10.30 7.67 -10.99 -0.08 10.21 16 13 O -0.54 -13.62 15.56 5.56 0.09 -13.53 16 14 C -0.14 -1.86 4.25 -27.88 -0.12 -1.98 16 15 C -0.10 -1.41 4.87 -26.73 -0.13 -1.54 16 16 C 0.06 0.67 4.74 37.16 0.18 0.84 16 17 O -0.31 -4.04 10.14 -19.42 -0.20 -4.24 16 18 C 0.13 1.57 6.69 -39.22 -0.26 1.30 16 19 C -0.16 -1.62 9.99 -39.43 -0.39 -2.02 16 20 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 21 C -0.16 -1.34 10.04 -39.56 -0.40 -1.74 16 22 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 23 C -0.21 -2.09 9.04 -39.44 -0.36 -2.45 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 26 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 31 H 0.09 0.97 8.11 -51.93 -0.42 0.54 16 32 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 34 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 35 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.07 6.30 -52.48 -0.33 0.74 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -34.35 340.15 -7.98 -42.32 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.99 Total: -2.38 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.20 Total: -4.97 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.21 Total: -39.29 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.11 Total: -17.77 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.35 -7.98 -42.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078914537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.360 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds