Wall clock time and date at job start Mon Mar 30 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99601 * 2 1 4 4 C 1.50698 * 109.47165 * 270.00152 * 3 2 1 5 5 H 1.07993 * 120.00262 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99678 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00332 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00005 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46820 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47100 * 120.00010 * 8 6 4 11 11 H 1.48499 * 109.47205 * 240.00323 * 8 6 4 12 12 C 1.34771 * 119.99855 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99834 * 180.02562 * 12 2 1 14 14 C 1.50703 * 120.00433 * 359.97438 * 12 2 1 15 15 C 1.52995 * 109.47151 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47181 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.47386 * 180.02562 * 16 15 14 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 1.09005 * 109.46757 * 269.99648 * 1 2 3 25 25 H 1.09003 * 109.47320 * 29.99539 * 1 2 3 26 26 H 1.09000 * 109.46980 * 149.99823 * 1 2 3 27 27 H 1.08997 * 109.47167 * 30.00731 * 3 2 1 28 28 H 1.09005 * 109.46336 * 150.00025 * 3 2 1 29 29 H 0.97001 * 120.00560 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46805 * 59.99987 * 14 12 2 31 31 H 1.08993 * 109.46945 * 300.00151 * 14 12 2 32 32 H 1.08999 * 109.47370 * 60.00219 * 15 14 12 33 33 H 1.09006 * 109.47017 * 300.00060 * 15 14 12 34 34 H 1.08999 * 109.46920 * 59.99785 * 16 15 14 35 35 H 1.08998 * 109.47220 * 300.00155 * 16 15 14 36 36 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 37 37 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 39 39 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6726 7 7 3.5549 3.6172 -0.6730 8 14 3.4386 3.4166 -3.4338 9 1 2.8605 2.4167 -4.3672 10 1 2.8015 4.7375 -3.6674 11 1 4.9013 3.5244 -3.6668 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 6 1.6147 -4.9602 -0.0012 17 8 2.5434 -6.0464 -0.0006 18 6 2.0239 -7.3022 -0.0016 19 6 2.8679 -8.4032 -0.0016 20 6 2.3375 -9.6788 -0.0021 21 6 0.9666 -9.8586 -0.0031 22 6 0.1232 -8.7629 -0.0026 23 6 0.6487 -7.4854 -0.0021 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0316 4.4432 -0.8502 30 1 0.7584 -2.5299 -0.8903 31 1 0.7591 -2.5303 0.8896 32 1 3.0063 -3.5775 0.8895 33 1 3.0063 -3.5774 -0.8906 34 1 0.9884 -5.0177 -0.8914 35 1 0.9878 -5.0183 0.8885 36 1 3.9388 -8.2633 -0.0056 37 1 2.9941 -10.5362 -0.0025 38 1 0.5538 -10.8566 -0.0039 39 1 -0.9472 -8.9060 -0.0030 40 1 -0.0104 -6.6298 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078914537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:22 Heat of formation + Delta-G solvation = -79.343224 kcal Electronic energy + Delta-G solvation = -20301.060429 eV Core-core repulsion = 17080.001507 eV Total energy + Delta-G solvation = -3221.058922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07891 -40.60490 -38.40454 -36.63908 -34.99131 -34.53766 -31.91250 -30.88677 -30.03572 -28.13246 -27.15035 -25.07729 -23.76894 -23.08853 -22.10202 -20.03155 -19.09210 -18.71917 -17.87479 -17.40235 -17.13374 -16.83375 -16.54653 -16.39601 -16.02874 -15.28031 -14.96649 -14.61161 -14.30554 -14.21187 -13.93510 -13.75654 -13.47703 -13.31816 -13.27781 -12.93280 -12.83157 -12.53909 -12.41642 -12.37423 -12.26868 -12.21361 -11.68894 -11.64591 -11.55822 -10.66741 -10.62026 -9.92047 -9.41538 -9.14039 -8.24063 -6.39193 0.42575 0.52475 1.35001 1.37766 1.49456 1.85050 2.08605 2.35449 2.58093 2.88266 3.05292 3.65201 3.91518 3.91864 3.99637 4.08053 4.23398 4.29854 4.38614 4.40492 4.47933 4.53812 4.60403 4.66606 4.75668 4.79552 4.98258 5.02056 5.07217 5.12257 5.22083 5.23755 5.41214 5.51493 5.55434 5.63364 5.83887 5.91523 6.04695 6.50829 6.68826 6.80088 7.27116 7.49548 8.83191 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.002664 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.775091 B =10507.226604 C =10764.849161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.256 3.744 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.004 3.996 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.490 3.510 13 O -0.604 6.604 14 C -0.117 4.117 15 C -0.099 4.099 16 C 0.067 3.933 17 O -0.340 6.340 18 C 0.106 3.894 19 C -0.178 4.178 20 C -0.085 4.085 21 C -0.166 4.166 22 C -0.085 4.085 23 C -0.218 4.218 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.024 0.976 28 H -0.005 1.005 29 H 0.267 0.733 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 -24.843 1.612 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C 0.135 3.865 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.279 3.721 13 O -0.486 6.486 14 C -0.156 4.156 15 C -0.138 4.138 16 C -0.007 4.007 17 O -0.255 6.255 18 C 0.061 3.939 19 C -0.197 4.197 20 C -0.103 4.103 21 C -0.184 4.184 22 C -0.103 4.103 23 C -0.237 4.237 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.042 0.958 28 H 0.013 0.987 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.737 -24.580 1.664 27.290 hybrid contribution 0.673 1.061 -0.642 1.411 sum -11.064 -23.519 1.023 26.011 Atomic orbital electron populations 1.21983 0.77559 1.04243 1.02752 1.48223 1.08620 1.06334 1.71213 1.18758 0.91094 0.80663 0.96017 1.21735 1.36717 1.06494 0.93051 0.92818 1.25906 0.94930 0.96497 1.02116 1.70060 1.38979 1.14863 1.33043 0.85338 0.77843 0.78459 0.78984 1.19020 1.19266 1.20861 1.21475 0.87854 0.86901 0.75851 1.90650 1.17029 1.88274 1.52603 1.21518 0.98515 0.88445 1.07125 1.21126 0.98075 0.91503 1.03050 1.22863 0.91254 0.83301 1.03315 1.86048 1.37664 1.13022 1.88728 1.19382 0.93123 0.84410 0.96946 1.20728 1.00061 0.91357 1.07527 1.21287 0.96239 0.96019 0.96741 1.21450 0.93367 1.00139 1.03437 1.21343 1.01284 0.91431 0.96249 1.21560 0.93350 1.00084 1.08687 0.90958 0.91799 0.88148 0.95807 0.98710 0.92390 0.85911 0.85371 0.92288 0.92756 0.89920 0.89616 0.85630 0.83285 0.83492 0.83287 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.13 10.24 127.77 1.31 3.44 16 2 N -0.61 -25.78 2.86 -851.12 -2.43 -28.21 16 3 C 0.26 14.07 5.16 85.63 0.44 14.51 16 4 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.00 0.25 5.46 84.65 0.46 0.71 16 7 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 8 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.49 20.12 7.67 87.66 0.67 20.80 16 13 O -0.60 -32.06 15.56 -3.04 -0.05 -32.10 16 14 C -0.12 -2.89 4.25 29.85 0.13 -2.77 16 15 C -0.10 -2.68 4.87 30.59 0.15 -2.53 16 16 C 0.07 1.34 4.74 71.98 0.34 1.68 16 17 O -0.34 -8.78 10.14 -92.40 -0.94 -9.72 16 18 C 0.11 2.40 6.69 22.51 0.15 2.55 16 19 C -0.18 -3.69 9.99 22.37 0.22 -3.46 16 20 C -0.09 -1.32 10.04 22.25 0.22 -1.09 16 21 C -0.17 -2.23 10.04 22.28 0.22 -2.01 16 22 C -0.09 -1.19 10.04 22.25 0.22 -0.97 16 23 C -0.22 -3.80 9.04 22.36 0.20 -3.60 16 24 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 26 H 0.10 1.93 6.44 -2.39 -0.02 1.92 16 27 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 28 H -0.01 -0.33 7.42 -2.38 -0.02 -0.35 16 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.12 2.31 7.40 -2.39 -0.02 2.29 16 31 H 0.13 2.23 8.11 -2.39 -0.02 2.21 16 32 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 33 H 0.05 1.75 8.10 -2.38 -0.02 1.73 16 34 H 0.08 1.31 7.66 -2.39 -0.02 1.29 16 35 H 0.09 1.30 7.66 -2.39 -0.02 1.28 16 36 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.14 1.91 6.30 -2.91 -0.02 1.89 16 Total: -1.00 -80.47 340.15 4.90 -75.58 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 1.01 Total: 7.96 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 4.99 Total: -4.17 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.15 Total: -85.02 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.98 Total: -41.82 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -80.47 4.90 -75.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078914537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.767 kcal (2) G-P(sol) polarization free energy of solvation -80.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds