Wall clock time and date at job start Mon Mar 30 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99811 * 2 1 4 4 O 1.20827 * 120.00222 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99752 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47306 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00108 * 270.00170 * 6 5 3 8 8 H 1.08011 * 120.00104 * 187.78424 * 7 6 5 9 9 C 1.38810 * 120.00357 * 7.78816 * 7 6 5 10 10 N 1.31618 * 119.99677 * 25.57708 * 9 7 6 11 11 Si 1.86802 * 120.00141 * 205.58724 * 9 7 6 12 12 H 1.48497 * 109.47065 * 59.99580 * 11 9 7 13 13 H 1.48502 * 109.46887 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46904 * 299.99465 * 11 9 7 15 15 C 1.46506 * 120.00239 * 89.99753 * 6 5 3 16 16 C 1.53001 * 109.47136 * 271.84259 * 15 6 5 17 17 C 1.52993 * 109.47188 * 179.97438 * 16 15 6 18 18 C 1.50700 * 109.47401 * 179.97438 * 17 16 15 19 19 C 1.38236 * 119.99895 * 89.99799 * 18 17 16 20 20 C 1.38239 * 119.99886 * 179.97438 * 19 18 17 21 21 C 1.38237 * 120.00080 * 359.97438 * 20 19 18 22 22 C 1.38232 * 119.99625 * 0.27920 * 21 20 19 23 23 C 1.38230 * 120.00229 * 359.51013 * 22 21 20 24 24 H 1.08998 * 109.47518 * 299.99947 * 1 2 3 25 25 H 1.09002 * 109.47291 * 59.99829 * 1 2 3 26 26 H 1.08998 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47107 * 59.99947 * 5 3 2 28 28 H 1.09005 * 109.47082 * 300.00056 * 5 3 2 29 29 H 0.97006 * 120.00190 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.47533 * 151.84443 * 15 6 5 31 31 H 1.09003 * 109.46686 * 31.83669 * 15 6 5 32 32 H 1.09002 * 109.47204 * 59.99456 * 16 15 6 33 33 H 1.08999 * 109.46866 * 300.00056 * 16 15 6 34 34 H 1.08999 * 109.47125 * 60.00402 * 17 16 15 35 35 H 1.08999 * 109.47646 * 300.00048 * 17 16 15 36 36 H 1.08002 * 120.00054 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.99610 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.99863 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.99535 * 179.72137 * 22 21 20 40 40 H 1.08004 * 120.00058 * 180.27834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1754 3.3360 -1.1872 8 1 4.6010 4.3287 -1.1919 9 6 3.8246 2.7257 -2.3835 10 7 2.8892 1.7999 -2.4005 11 14 4.6803 3.2180 -3.9694 12 1 6.1371 2.9574 -3.8472 13 1 4.1286 2.4241 -5.0966 14 1 4.4557 4.6635 -4.2248 15 6 4.1898 3.3825 1.2674 16 6 2.8683 3.9975 1.7326 17 6 3.0856 4.7310 3.0576 18 6 1.7841 5.3373 3.5154 19 6 0.9297 4.6108 4.3236 20 6 -0.2639 5.1672 4.7441 21 6 -0.6028 6.4502 4.3568 22 6 0.2492 7.1746 3.5443 23 6 1.4447 6.6199 3.1274 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9556 0.7809 -0.8908 28 1 3.9563 0.7806 0.8892 29 1 2.6443 1.3730 -3.2364 30 1 4.9288 4.1717 1.1286 31 1 4.5470 2.6781 2.0187 32 1 2.1293 3.2084 1.8713 33 1 2.5111 4.7018 0.9813 34 1 3.8247 5.5200 2.9191 35 1 3.4427 4.0264 3.8086 36 1 1.1947 3.6086 4.6266 37 1 -0.9312 4.5997 5.3759 38 1 -1.5352 6.8850 4.6856 39 1 -0.0177 8.1753 3.2380 40 1 2.1125 7.1876 2.4963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080896498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:12 Heat of formation + Delta-G solvation = -58.839754 kcal Electronic energy + Delta-G solvation = -21773.734595 eV Core-core repulsion = 18553.564770 eV Total energy + Delta-G solvation = -3220.169825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76745 -40.13542 -38.03848 -36.45917 -35.29280 -33.19418 -31.74483 -31.04284 -29.60248 -27.64899 -27.06264 -24.42693 -23.43439 -22.46526 -21.62170 -21.40379 -18.83391 -18.01767 -17.70002 -17.25080 -16.84986 -16.50349 -16.34628 -16.01648 -15.55623 -15.27891 -14.59063 -14.55603 -14.20646 -14.01575 -13.89098 -13.72693 -13.35328 -13.04508 -12.85422 -12.68056 -12.57436 -12.43765 -12.23402 -12.03252 -11.93874 -11.83922 -11.66703 -11.42329 -11.19529 -10.89742 -10.46991 -9.79856 -9.57711 -8.98616 -7.95022 -5.19939 0.49630 0.52147 1.48674 1.51219 1.58030 2.06811 2.37463 2.57948 2.90527 3.25988 3.58399 3.95303 3.97381 4.18674 4.27225 4.29445 4.39068 4.46010 4.53189 4.58461 4.62039 4.65910 4.67678 4.76816 4.83201 4.89901 4.94300 5.13216 5.17498 5.22522 5.24016 5.37611 5.60011 5.62640 5.63720 5.70605 5.80979 6.01072 6.16822 6.23039 7.04669 7.55595 7.84119 8.19090 9.14448 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.005310 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.489569 B = 5271.395462 C = 6147.022874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.388 6.388 3 C 0.465 3.535 4 O -0.537 6.537 5 C 0.186 3.814 6 N -0.583 5.583 7 C -0.254 4.254 8 H 0.080 0.920 9 C -0.051 4.051 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.273 1.273 13 H -0.299 1.299 14 H -0.286 1.286 15 C 0.142 3.858 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.089 4.089 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.138 4.138 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.248 0.752 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 2.384 13.365 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.305 6.305 3 C 0.306 3.694 4 O -0.424 6.424 5 C 0.056 3.944 6 N -0.302 5.302 7 C -0.384 4.384 8 H 0.097 0.903 9 C -0.246 4.246 10 N -0.576 5.576 11 Si 0.796 3.204 12 H -0.199 1.199 13 H -0.226 1.226 14 H -0.213 1.213 15 C 0.016 3.984 16 C -0.148 4.148 17 C -0.111 4.111 18 C -0.089 4.089 19 C -0.153 4.153 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.156 4.156 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.143 0.857 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.901 2.624 13.227 13.793 hybrid contribution -0.481 0.375 -1.489 1.609 sum -3.382 2.999 11.738 12.578 Atomic orbital electron populations 1.23102 0.77891 1.03951 1.00425 1.86509 1.22920 1.35752 1.85332 1.25800 0.94101 0.80196 0.69270 1.90447 1.67472 1.37481 1.47023 1.20530 0.85046 0.86744 1.02076 1.44479 1.75361 1.07759 1.02627 1.19534 1.33706 1.00960 0.84202 0.90263 1.25400 0.98335 1.00256 1.00577 1.70009 1.29386 1.31986 1.26240 0.85333 0.78987 0.76894 0.79170 1.19892 1.22564 1.21273 1.21223 0.94912 0.95848 0.86373 1.21956 0.99522 0.98427 0.94851 1.20614 0.93861 0.99847 0.96742 1.20187 0.97442 0.94510 0.96738 1.21285 0.95181 1.00064 0.98804 1.21452 0.96652 0.96063 1.00301 1.21450 1.00423 0.94969 0.98684 1.21435 0.94181 1.00931 0.98039 1.21287 0.98164 0.95650 1.00528 0.93181 0.95009 0.85704 0.88921 0.89436 0.94202 0.92016 0.91176 0.94463 0.96075 0.90358 0.89712 0.85633 0.84071 0.83796 0.84327 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 10.56 113.37 1.20 2.65 16 2 O -0.39 -17.02 10.57 -51.43 -0.54 -17.57 16 3 C 0.46 22.99 5.89 71.23 0.42 23.41 16 4 O -0.54 -29.90 13.52 21.96 0.30 -29.60 16 5 C 0.19 8.65 5.59 85.63 0.48 9.12 16 6 N -0.58 -28.09 2.09 -706.32 -1.48 -29.56 16 7 C -0.25 -13.65 9.70 84.03 0.81 -12.84 16 8 H 0.08 4.17 7.92 -2.90 -0.02 4.15 16 9 C -0.05 -2.82 4.89 84.86 0.41 -2.40 16 10 N -0.93 -53.67 9.01 21.65 0.20 -53.48 16 11 Si 0.97 44.85 29.62 68.60 2.03 46.88 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 15 C 0.14 5.48 5.71 86.38 0.49 5.98 16 16 C -0.11 -4.22 4.71 30.59 0.14 -4.08 16 17 C -0.07 -2.16 5.34 29.85 0.16 -2.00 16 18 C -0.09 -2.69 5.13 -19.87 -0.10 -2.79 16 19 C -0.14 -3.80 9.70 22.27 0.22 -3.58 16 20 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 21 C -0.14 -3.20 10.05 22.27 0.22 -2.98 16 22 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 23 C -0.14 -4.02 9.70 22.27 0.22 -3.81 16 24 H 0.05 1.71 8.13 -2.39 -0.02 1.70 16 25 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 26 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.09 4.73 6.26 -2.39 -0.01 4.71 16 28 H 0.09 3.35 7.91 -2.38 -0.02 3.33 16 29 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 30 H 0.06 2.27 8.00 -2.39 -0.02 2.25 16 31 H 0.07 2.29 7.92 -2.39 -0.02 2.27 16 32 H 0.04 1.64 6.39 -2.39 -0.02 1.63 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 2.11 8.08 -2.39 -0.02 2.10 16 35 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 36 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -68.95 334.94 6.63 -62.31 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.01 Total: 20.21 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.12 Total: 0.80 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -1.28 Total: -83.04 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.25 Total: -47.17 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.95 6.63 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.474 kcal (2) G-P(sol) polarization free energy of solvation -68.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds