Wall clock time and date at job start Mon Mar 30 2020 01:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47008 * 111.00371 * 2 1 4 4 C 1.53101 * 109.25809 * 177.60577 * 3 2 1 5 5 O 1.43013 * 109.25861 * 56.85269 * 4 3 2 6 6 C 1.43013 * 113.73550 * 301.32684 * 5 4 3 7 7 H 1.09000 * 109.50901 * 298.69558 * 6 5 4 8 8 C 1.52998 * 109.50688 * 178.60585 * 6 5 4 9 9 O 1.42896 * 109.47378 * 65.08719 * 8 6 5 10 10 C 1.35674 * 117.00523 * 180.02562 * 9 8 6 11 11 C 1.39312 * 119.81784 * 179.97438 * 10 9 8 12 12 C 1.36443 * 120.18439 * 180.02562 * 11 10 9 13 13 C 1.40830 * 119.80943 * 359.97438 * 12 11 10 14 14 C 1.41212 * 120.17915 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00040 * 205.24003 * 14 13 12 16 16 C 1.39885 * 119.99847 * 25.23764 * 14 13 12 17 17 N 1.30879 * 120.00082 * 27.16012 * 16 14 13 18 18 Si 1.86804 * 120.00068 * 206.87964 * 16 14 13 19 19 H 1.48500 * 109.46883 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47191 * 120.00247 * 18 16 14 21 21 H 1.48501 * 109.47385 * 240.00434 * 18 16 14 22 22 C 1.40839 * 119.64339 * 0.27669 * 13 12 11 23 23 C 1.36439 * 119.80867 * 359.46796 * 22 13 12 24 24 C 1.47018 * 110.99885 * 236.31795 * 2 1 3 25 25 H 1.09003 * 109.46986 * 63.95032 * 1 2 3 26 26 H 1.08997 * 109.47541 * 183.95075 * 1 2 3 27 27 H 1.09003 * 109.46987 * 303.95561 * 1 2 3 28 28 H 1.08997 * 109.50713 * 57.67384 * 3 2 1 29 29 H 1.08999 * 109.54709 * 297.56423 * 3 2 1 30 30 H 1.08995 * 109.50515 * 296.91132 * 4 3 2 31 31 H 1.09002 * 109.53679 * 176.80740 * 4 3 2 32 32 H 1.09001 * 109.47332 * 305.08618 * 8 6 5 33 33 H 1.09001 * 109.47534 * 185.09001 * 8 6 5 34 34 H 1.07999 * 119.91177 * 359.97438 * 11 10 9 35 35 H 1.07996 * 120.09195 * 179.97438 * 12 11 10 36 36 H 0.96999 * 119.99880 * 3.86651 * 17 16 14 37 37 H 1.08003 * 120.09468 * 179.72408 * 22 13 12 38 38 H 1.07998 * 119.90616 * 180.23464 * 23 22 13 39 39 H 1.09001 * 109.47049 * 62.43561 * 24 2 1 40 40 H 1.09005 * 109.54580 * 302.30914 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3262 0.0604 5 8 4.0175 0.5573 -1.0403 6 6 3.5250 -0.7850 -1.0709 7 1 3.8391 -1.3087 -0.1680 8 6 4.0825 -1.5059 -2.2998 9 8 5.5009 -1.6288 -2.1773 10 6 6.1554 -2.2487 -3.1913 11 6 7.5390 -2.3999 -3.1326 12 6 8.2049 -3.0216 -4.1484 13 6 7.4893 -3.5115 -5.2580 14 6 8.1705 -4.1567 -6.3134 15 1 7.7425 -4.1685 -7.3049 16 6 9.3996 -4.7804 -6.0746 17 7 9.6787 -5.2413 -4.8819 18 14 10.6393 -4.9626 -7.4600 19 1 10.0840 -4.3682 -8.7024 20 1 11.8962 -4.2609 -7.0950 21 1 10.9235 -6.4028 -7.6839 22 6 6.0913 -3.3497 -5.3119 23 6 5.4401 -2.7303 -4.2854 24 6 1.9958 -0.7612 -1.1421 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.5740 0.8524 28 1 1.6135 1.9091 0.8682 29 1 1.6829 1.8832 -0.9106 30 1 3.8385 0.8642 0.9965 31 1 3.9228 2.3395 0.0035 32 1 3.8434 -0.9338 -3.1963 33 1 3.6368 -2.4980 -2.3725 34 1 8.0863 -2.0232 -2.2811 35 1 9.2776 -3.1376 -4.1015 36 1 9.0124 -5.2009 -4.1782 37 1 5.5358 -3.7187 -6.1615 38 1 4.3676 -2.6089 -4.3233 39 1 1.6821 -0.2857 -2.0714 40 1 1.6139 -1.7816 -1.1077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092056298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:33 Heat of formation + Delta-G solvation = -62.843439 kcal Electronic energy + Delta-G solvation = -21009.661160 eV Core-core repulsion = 17789.317722 eV Total energy + Delta-G solvation = -3220.343438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.90322 -38.69418 -36.62493 -35.77834 -33.51664 -32.23561 -29.89965 -29.17830 -28.70878 -26.70207 -24.59044 -24.28367 -22.73297 -21.08325 -20.55829 -20.43062 -17.90237 -17.11340 -16.71212 -16.41837 -15.54401 -15.32908 -15.04989 -14.54075 -14.47341 -14.22774 -13.93709 -13.87149 -13.02248 -12.96242 -12.64147 -12.44243 -12.24547 -12.06542 -11.84388 -11.57743 -11.30847 -11.23879 -11.07952 -10.92899 -10.57122 -10.40243 -10.04799 -9.74220 -9.61351 -9.45269 -8.83954 -8.73705 -7.82773 -7.22705 -7.06696 -4.29547 2.78235 2.80462 3.18787 3.30390 3.38062 3.39689 3.64480 4.01964 4.05993 4.58488 4.66955 4.71574 4.84310 4.95277 4.99819 5.15405 5.20649 5.25207 5.37639 5.43260 5.50279 5.51324 5.52997 5.62061 5.73452 5.92259 5.98185 6.14188 6.56715 6.59349 6.61902 6.83220 6.97774 7.12247 7.27541 7.41033 7.66496 7.77474 7.85418 8.14072 8.22761 8.49612 8.82533 8.94639 10.10856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.052268 B = 0.003009 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.573608 B = 9304.291105 C = 9559.851232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.062 3.938 5 O -0.368 6.368 6 C 0.097 3.903 7 H 0.076 0.924 8 C 0.078 3.922 9 O -0.318 6.318 10 C -0.019 4.019 11 C -0.099 4.099 12 C -0.191 4.191 13 C 0.077 3.923 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.038 3.962 17 N -0.801 5.801 18 Si 1.070 2.930 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.279 1.279 22 C -0.201 4.201 23 C -0.155 4.155 24 C 0.026 3.974 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.299 0.701 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 8.858 8.042 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.016 4.016 5 O -0.287 6.287 6 C 0.039 3.961 7 H 0.094 0.906 8 C 0.001 3.999 9 O -0.234 6.234 10 C -0.062 4.062 11 C -0.118 4.118 12 C -0.210 4.210 13 C 0.075 3.925 14 C -0.556 4.556 15 H 0.092 0.908 16 C -0.183 4.183 17 N -0.425 5.425 18 Si 0.894 3.106 19 H -0.202 1.202 20 H -0.200 1.200 21 H -0.205 1.205 22 C -0.221 4.221 23 C -0.174 4.174 24 C -0.102 4.102 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.963 8.197 8.196 16.658 hybrid contribution -2.402 0.820 -0.300 2.556 sum -14.365 9.018 7.896 18.709 Atomic orbital electron populations 1.22386 0.86698 1.02570 1.00652 1.62152 1.08286 1.13731 1.42505 1.22851 0.97071 0.89663 1.01660 1.22652 0.91634 0.96702 0.90587 1.88131 1.69726 1.23084 1.47744 1.22120 0.90980 0.83907 0.99070 0.90613 1.22344 0.82528 0.98545 0.96461 1.85858 1.18075 1.76136 1.43326 1.18491 0.91740 1.05932 0.90061 1.19731 0.90740 1.02071 0.99211 1.20771 0.98851 1.04850 0.96535 1.17655 0.91124 0.91318 0.92451 1.20444 1.05406 1.32655 0.97069 0.90770 1.26972 0.98630 0.91677 1.00994 1.70444 1.39074 1.29089 1.03908 0.83590 0.75325 0.77403 0.74321 1.20223 1.19994 1.20488 1.20523 0.94246 1.08068 0.99245 1.20465 0.97511 1.03689 0.95728 1.22698 0.95468 0.99754 0.92282 0.95442 0.91020 0.91139 0.89633 0.93875 0.92236 0.88349 0.92443 0.91594 0.88244 0.87006 0.88800 0.88662 0.88709 0.93531 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.61 60.06 0.58 0.77 16 2 N -0.54 -5.58 4.98 -242.59 -1.21 -6.79 16 3 C 0.02 0.15 5.66 -3.71 -0.02 0.13 16 4 C 0.06 0.68 7.01 37.21 0.26 0.94 16 5 O -0.37 -5.62 10.44 -39.86 -0.42 -6.04 16 6 C 0.10 1.38 3.09 -26.68 -0.08 1.29 16 7 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 8 C 0.08 1.29 4.40 37.16 0.16 1.45 16 9 O -0.32 -6.76 10.09 -23.36 -0.24 -7.00 16 10 C -0.02 -0.45 6.71 -38.78 -0.26 -0.71 16 11 C -0.10 -2.42 9.92 -39.83 -0.40 -2.81 16 12 C -0.19 -5.00 7.92 -39.25 -0.31 -5.31 16 13 C 0.08 2.08 5.29 -106.80 -0.57 1.52 16 14 C -0.53 -14.23 8.96 -37.84 -0.34 -14.57 16 15 H 0.07 1.96 7.97 -52.49 -0.42 1.54 16 16 C 0.04 0.99 4.89 -17.34 -0.08 0.91 16 17 N -0.80 -21.59 12.39 55.54 0.69 -20.90 16 18 Si 1.07 21.97 30.01 -169.99 -5.10 16.87 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.20 -5.02 9.74 -39.25 -0.38 -5.40 16 23 C -0.16 -3.55 8.96 -39.83 -0.36 -3.91 16 24 C 0.03 0.29 4.95 -3.71 -0.02 0.28 16 25 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.95 7.65 -51.93 -0.40 0.55 16 33 H 0.07 0.99 7.65 -51.93 -0.40 0.59 16 34 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 35 H 0.11 2.99 6.53 -52.49 -0.34 2.64 16 36 H 0.30 8.26 6.72 -40.82 -0.27 7.99 16 37 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.09 1.87 6.27 -52.49 -0.33 1.54 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -29.94 326.65 -9.19 -39.13 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.03 Total: 5.24 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -1.82 Total: -25.43 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: -0.52 Total: -27.69 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.65 Total: -13.04 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.10 Total: 16.87 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.94 -9.19 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092056298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.713 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds