Wall clock time and date at job start Mon Mar 30 2020 01:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47010 * 111.00161 * 2 1 4 4 C 1.53095 * 109.25867 * 182.38553 * 3 2 1 5 5 O 1.43093 * 109.28826 * 303.15309 * 4 3 2 6 6 C 1.43022 * 113.68619 * 58.63599 * 5 4 3 7 7 H 1.08995 * 109.50552 * 61.31320 * 6 5 4 8 8 C 1.53001 * 109.50490 * 181.40117 * 6 5 4 9 9 O 1.42904 * 109.47001 * 294.91272 * 8 6 5 10 10 C 1.35671 * 116.99832 * 180.02562 * 9 8 6 11 11 C 1.39310 * 119.81981 * 359.72331 * 10 9 8 12 12 C 1.36442 * 120.18466 * 179.76060 * 11 10 9 13 13 C 1.40836 * 119.80946 * 0.51275 * 12 11 10 14 14 C 1.41217 * 120.17707 * 179.76060 * 13 12 11 15 15 H 1.07997 * 119.99954 * 204.52462 * 14 13 12 16 16 C 1.39891 * 119.99576 * 24.53107 * 14 13 12 17 17 N 1.30879 * 120.00328 * 17.95262 * 16 14 13 18 18 Si 1.86802 * 119.99694 * 197.94840 * 16 14 13 19 19 H 1.48500 * 109.46938 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47140 * 120.00154 * 18 16 14 21 21 H 1.48505 * 109.47251 * 240.00502 * 18 16 14 22 22 C 1.40826 * 119.64176 * 359.74398 * 13 12 11 23 23 C 1.36437 * 119.81462 * 0.02562 * 22 13 12 24 24 C 1.47012 * 110.99541 * 123.63441 * 2 1 3 25 25 H 1.08995 * 109.47402 * 296.36873 * 1 2 3 26 26 H 1.09003 * 109.46594 * 56.36882 * 1 2 3 27 27 H 1.08993 * 109.47173 * 176.36128 * 1 2 3 28 28 H 1.08997 * 109.50488 * 302.32649 * 3 2 1 29 29 H 1.09003 * 109.50281 * 62.45570 * 3 2 1 30 30 H 1.09009 * 109.50074 * 63.08675 * 4 3 2 31 31 H 1.08999 * 109.50772 * 183.16765 * 4 3 2 32 32 H 1.08999 * 109.47471 * 54.90828 * 8 6 5 33 33 H 1.08992 * 109.47247 * 174.91192 * 8 6 5 34 34 H 1.08000 * 119.90808 * 0.02562 * 11 10 9 35 35 H 1.08001 * 120.09170 * 180.25660 * 12 11 10 36 36 H 0.97001 * 119.99763 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.09539 * 180.02562 * 22 13 12 38 38 H 1.08000 * 119.90891 * 179.97438 * 23 22 13 39 39 H 1.09002 * 109.51061 * 57.67580 * 24 2 1 40 40 H 1.08999 * 109.54569 * 297.56327 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0602 5 8 4.0184 0.5570 1.0409 6 6 3.5249 -0.7850 1.0710 7 1 3.8385 -1.3085 0.1679 8 6 4.0823 -1.5068 2.2995 9 8 5.5007 -1.6305 2.1765 10 6 6.1549 -2.2522 3.1895 11 6 5.4402 -2.7293 4.2860 12 6 6.0900 -3.3599 5.3067 13 6 7.4884 -3.5184 5.2545 14 6 8.1694 -4.1654 6.3089 15 1 9.2139 -3.9558 6.4861 16 6 7.4909 -5.0779 7.1238 17 7 6.3601 -5.5997 6.7214 18 14 8.1991 -5.5516 8.7862 19 1 9.4768 -4.8272 9.0045 20 1 7.2357 -5.1886 9.8562 21 1 8.4475 -7.0154 8.8195 22 6 8.2039 -3.0284 4.1449 23 6 7.5385 -2.4043 3.1304 24 6 1.9958 -0.7602 1.1427 25 1 -0.3634 0.4564 0.9207 26 1 -0.3632 0.5692 -0.8557 27 1 -0.3633 -1.0255 -0.0652 28 1 1.6135 1.9091 -0.8682 29 1 1.6828 1.8825 0.9110 30 1 3.8386 0.8642 -0.9963 31 1 3.9222 2.3398 -0.0037 32 1 3.8440 -0.9349 3.1963 33 1 3.6361 -2.4986 2.3718 34 1 4.3683 -2.6034 4.3264 35 1 5.5339 -3.7329 6.1541 36 1 5.8895 -6.2322 7.2867 37 1 9.2765 -3.1463 4.0971 38 1 8.0857 -2.0275 2.2789 39 1 1.6133 -1.7804 1.1087 40 1 1.6827 -0.2850 2.0724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092056299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:35 Heat of formation + Delta-G solvation = -56.628271 kcal Electronic energy + Delta-G solvation = -21023.443192 eV Core-core repulsion = 17803.369264 eV Total energy + Delta-G solvation = -3220.073928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84493 -38.56940 -36.40075 -35.70772 -33.38548 -32.17145 -29.62040 -29.30214 -28.92394 -26.63541 -24.67609 -24.25381 -22.65166 -21.07183 -20.46380 -20.21673 -17.32637 -16.96049 -16.65026 -16.36372 -15.58493 -15.29198 -15.06860 -14.91119 -14.39675 -14.03472 -13.89527 -13.79167 -12.98158 -12.66967 -12.53948 -12.37898 -12.18519 -11.94406 -11.72254 -11.57467 -11.47006 -11.13014 -10.99559 -10.94217 -10.65567 -10.42921 -9.88477 -9.74586 -9.69672 -9.33406 -8.97866 -8.69405 -7.61376 -6.97089 -6.69898 -4.21662 2.79028 3.00319 3.10294 3.15782 3.23594 3.44842 3.69627 3.97506 4.09009 4.64830 4.71062 4.76322 4.89843 4.99899 5.05035 5.20241 5.26122 5.29441 5.43704 5.49948 5.54541 5.60937 5.65652 5.71392 5.80722 5.99417 6.15383 6.32585 6.61541 6.63795 6.76290 6.93125 7.10105 7.16759 7.31684 7.45332 7.59948 7.94687 8.03912 8.19372 8.48821 8.69124 8.93626 9.03213 10.24790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.003204 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.813765 B = 8738.074712 C = 9270.088212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.061 3.939 5 O -0.368 6.368 6 C 0.098 3.902 7 H 0.076 0.924 8 C 0.078 3.922 9 O -0.320 6.320 10 C -0.006 4.006 11 C -0.175 4.175 12 C -0.134 4.134 13 C 0.086 3.914 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.801 5.801 18 Si 0.906 3.094 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.195 4.195 23 C -0.113 4.113 24 C 0.026 3.974 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.278 0.722 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 9.010 -9.587 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.113 4.113 4 C -0.016 4.016 5 O -0.287 6.287 6 C 0.039 3.961 7 H 0.094 0.906 8 C 0.001 3.999 9 O -0.236 6.236 10 C -0.049 4.049 11 C -0.194 4.194 12 C -0.153 4.153 13 C 0.084 3.916 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.427 5.427 18 Si 0.731 3.269 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.215 4.215 23 C -0.131 4.131 24 C -0.103 4.103 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.682 8.755 -9.973 17.036 hybrid contribution -0.572 -0.102 1.464 1.575 sum -11.255 8.653 -8.510 16.552 Atomic orbital electron populations 1.22386 0.86733 1.02564 1.00638 1.62173 1.08270 1.13720 1.42494 1.22850 0.97077 0.89704 1.01623 1.22657 0.91634 0.96686 0.90604 1.88151 1.69661 1.23139 1.47729 1.22128 0.90960 0.83844 0.99124 0.90643 1.22346 0.82520 0.98636 0.96370 1.85842 1.18142 1.76026 1.43549 1.18588 0.91665 1.04665 0.90024 1.20607 0.97671 1.04813 0.96316 1.20936 0.95234 1.00697 0.98445 1.17597 0.91940 0.90690 0.91378 1.19493 0.97877 1.20650 1.11287 0.90482 1.25869 0.94474 0.94618 0.99222 1.69852 1.14771 1.22208 1.35899 0.86303 0.80179 0.78632 0.81823 1.18459 1.19842 1.20107 1.20599 0.98286 1.07562 0.95060 1.19610 0.90710 1.03383 0.99439 1.22701 0.95508 0.99790 0.92256 0.95437 0.91176 0.91013 0.89675 0.93882 0.92263 0.88398 0.92389 0.91466 0.88849 0.86140 0.91118 0.88217 0.88492 0.89159 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.60 60.07 0.58 0.78 16 2 N -0.54 -5.74 4.99 -242.60 -1.21 -6.94 16 3 C 0.02 0.15 5.66 -3.71 -0.02 0.13 16 4 C 0.06 0.69 7.01 37.21 0.26 0.95 16 5 O -0.37 -5.68 10.44 -39.86 -0.42 -6.10 16 6 C 0.10 1.41 3.08 -26.68 -0.08 1.33 16 7 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 8 C 0.08 1.33 4.40 37.16 0.16 1.49 16 9 O -0.32 -6.87 10.09 -23.35 -0.24 -7.11 16 10 C -0.01 -0.15 6.71 -38.78 -0.26 -0.41 16 11 C -0.18 -4.20 8.96 -39.83 -0.36 -4.56 16 12 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 13 C 0.09 2.34 5.57 -106.80 -0.60 1.74 16 14 C -0.46 -12.44 9.04 -37.83 -0.34 -12.78 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 16 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 17 N -0.80 -20.89 10.96 55.54 0.61 -20.28 16 18 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 23 C -0.11 -2.70 9.92 -39.83 -0.40 -3.10 16 24 C 0.03 0.30 4.95 -3.71 -0.02 0.28 16 25 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.99 7.64 -51.93 -0.40 0.60 16 33 H 0.07 1.06 7.66 -51.93 -0.40 0.67 16 34 H 0.09 1.98 6.27 -52.49 -0.33 1.65 16 35 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -29.81 327.28 -9.30 -39.11 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.07 Total: 4.06 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.88 Total: -21.50 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: -0.60 Total: -27.22 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.65 Total: -13.21 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.81 -9.30 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092056299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.518 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds