Wall clock time and date at job start Mon Mar 30 2020 01:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47010 * 111.00161 * 2 1 4 4 C 1.53095 * 109.25867 * 182.38553 * 3 2 1 5 5 O 1.43093 * 109.28826 * 303.15309 * 4 3 2 6 6 C 1.43022 * 113.68619 * 58.63599 * 5 4 3 7 7 H 1.08995 * 109.50552 * 61.31320 * 6 5 4 8 8 C 1.53001 * 109.50490 * 181.40117 * 6 5 4 9 9 O 1.42904 * 109.47001 * 294.91272 * 8 6 5 10 10 C 1.35671 * 116.99832 * 180.02562 * 9 8 6 11 11 C 1.39310 * 119.81981 * 359.72331 * 10 9 8 12 12 C 1.36442 * 120.18466 * 179.76060 * 11 10 9 13 13 C 1.40836 * 119.80946 * 0.51275 * 12 11 10 14 14 C 1.41217 * 120.17707 * 179.76060 * 13 12 11 15 15 H 1.07997 * 119.99954 * 204.52462 * 14 13 12 16 16 C 1.39891 * 119.99576 * 24.53107 * 14 13 12 17 17 N 1.30879 * 120.00328 * 17.95262 * 16 14 13 18 18 Si 1.86802 * 119.99694 * 197.94840 * 16 14 13 19 19 H 1.48500 * 109.46938 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47140 * 120.00154 * 18 16 14 21 21 H 1.48505 * 109.47251 * 240.00502 * 18 16 14 22 22 C 1.40826 * 119.64176 * 359.74398 * 13 12 11 23 23 C 1.36437 * 119.81462 * 0.02562 * 22 13 12 24 24 C 1.47012 * 110.99541 * 123.63441 * 2 1 3 25 25 H 1.08995 * 109.47402 * 296.36873 * 1 2 3 26 26 H 1.09003 * 109.46594 * 56.36882 * 1 2 3 27 27 H 1.08993 * 109.47173 * 176.36128 * 1 2 3 28 28 H 1.08997 * 109.50488 * 302.32649 * 3 2 1 29 29 H 1.09003 * 109.50281 * 62.45570 * 3 2 1 30 30 H 1.09009 * 109.50074 * 63.08675 * 4 3 2 31 31 H 1.08999 * 109.50772 * 183.16765 * 4 3 2 32 32 H 1.08999 * 109.47471 * 54.90828 * 8 6 5 33 33 H 1.08992 * 109.47247 * 174.91192 * 8 6 5 34 34 H 1.08000 * 119.90808 * 0.02562 * 11 10 9 35 35 H 1.08001 * 120.09170 * 180.25660 * 12 11 10 36 36 H 0.97001 * 119.99763 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.09539 * 180.02562 * 22 13 12 38 38 H 1.08000 * 119.90891 * 179.97438 * 23 22 13 39 39 H 1.09002 * 109.51061 * 57.67580 * 24 2 1 40 40 H 1.08999 * 109.54569 * 297.56327 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0602 5 8 4.0184 0.5570 1.0409 6 6 3.5249 -0.7850 1.0710 7 1 3.8385 -1.3085 0.1679 8 6 4.0823 -1.5068 2.2995 9 8 5.5007 -1.6305 2.1765 10 6 6.1549 -2.2522 3.1895 11 6 5.4402 -2.7293 4.2860 12 6 6.0900 -3.3599 5.3067 13 6 7.4884 -3.5184 5.2545 14 6 8.1694 -4.1654 6.3089 15 1 9.2139 -3.9558 6.4861 16 6 7.4909 -5.0779 7.1238 17 7 6.3601 -5.5997 6.7214 18 14 8.1991 -5.5516 8.7862 19 1 9.4768 -4.8272 9.0045 20 1 7.2357 -5.1886 9.8562 21 1 8.4475 -7.0154 8.8195 22 6 8.2039 -3.0284 4.1449 23 6 7.5385 -2.4043 3.1304 24 6 1.9958 -0.7602 1.1427 25 1 -0.3634 0.4564 0.9207 26 1 -0.3632 0.5692 -0.8557 27 1 -0.3633 -1.0255 -0.0652 28 1 1.6135 1.9091 -0.8682 29 1 1.6828 1.8825 0.9110 30 1 3.8386 0.8642 -0.9963 31 1 3.9222 2.3398 -0.0037 32 1 3.8440 -0.9349 3.1963 33 1 3.6361 -2.4986 2.3718 34 1 4.3683 -2.6034 4.3264 35 1 5.5339 -3.7329 6.1541 36 1 5.8895 -6.2322 7.2867 37 1 9.2765 -3.1463 4.0971 38 1 8.0857 -2.0275 2.2789 39 1 1.6133 -1.7804 1.1087 40 1 1.6827 -0.2850 2.0724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092056299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:34 Heat of formation + Delta-G solvation = -75.345961 kcal Electronic energy + Delta-G solvation = -21024.254852 eV Core-core repulsion = 17803.369264 eV Total energy + Delta-G solvation = -3220.885588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.97102 -40.18866 -38.14479 -36.67390 -35.25631 -33.32445 -31.53750 -30.99784 -29.96788 -27.85065 -26.47077 -25.09513 -23.93685 -22.85682 -21.98824 -21.44355 -19.26693 -18.64645 -17.80391 -17.39478 -17.09618 -16.48899 -16.14850 -15.88608 -15.83331 -15.77677 -15.34883 -14.84973 -14.67852 -14.17672 -13.90343 -13.72643 -13.37120 -13.21800 -13.15685 -12.93842 -12.76192 -12.73851 -12.39660 -12.31438 -12.07722 -11.71039 -11.64111 -11.50126 -11.22184 -10.86725 -10.68998 -9.56538 -9.48255 -8.90913 -8.59610 -6.21862 0.93680 1.04842 1.40387 1.51170 1.55687 2.23656 2.36473 2.66729 2.73039 2.95002 3.70815 3.81108 3.88061 3.92592 3.98615 4.15842 4.25906 4.29075 4.35670 4.42210 4.45644 4.56720 4.59581 4.62295 4.74224 4.81377 4.90506 4.95862 4.98532 5.02653 5.15760 5.37555 5.52158 5.66743 5.81905 5.91751 5.97747 6.06730 6.16019 6.24261 6.56630 6.79282 6.95810 7.10208 8.37480 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.003204 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.813765 B = 8738.074712 C = 9270.088212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.019 3.981 4 C 0.055 3.945 5 O -0.400 6.400 6 C 0.103 3.897 7 H 0.070 0.930 8 C 0.071 3.929 9 O -0.330 6.330 10 C -0.002 4.002 11 C -0.176 4.176 12 C -0.154 4.154 13 C 0.055 3.945 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.831 5.831 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.266 1.266 22 C -0.205 4.205 23 C -0.121 4.121 24 C 0.033 3.967 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.287 0.713 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 9.504 -10.021 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.109 4.109 4 C -0.022 4.022 5 O -0.319 6.319 6 C 0.045 3.955 7 H 0.088 0.912 8 C -0.005 4.005 9 O -0.246 6.246 10 C -0.046 4.046 11 C -0.195 4.195 12 C -0.174 4.174 13 C 0.052 3.948 14 C -0.528 4.528 15 H 0.094 0.906 16 C -0.180 4.180 17 N -0.457 5.457 18 Si 0.803 3.197 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.191 1.191 22 C -0.224 4.224 23 C -0.140 4.140 24 C -0.096 4.096 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.802 9.264 -10.437 18.277 hybrid contribution -0.302 -0.167 1.443 1.484 sum -12.104 9.096 -8.994 17.611 Atomic orbital electron populations 1.22457 0.85041 1.03359 1.01433 1.62200 1.09793 1.14051 1.41719 1.22863 0.95882 0.89567 1.02601 1.22909 0.92935 0.96951 0.89383 1.88094 1.70720 1.23591 1.49525 1.22041 0.92664 0.83485 0.97317 0.91201 1.22654 0.80154 0.99791 0.97902 1.85837 1.20672 1.75413 1.42635 1.18728 0.91956 1.03689 0.90209 1.20814 0.98988 1.03968 0.95712 1.20916 0.95263 1.02166 0.99060 1.17960 0.92689 0.91721 0.92386 1.19737 0.98239 1.22099 1.12768 0.90626 1.26725 0.94732 0.93964 1.02591 1.69895 1.15880 1.22591 1.37383 0.85162 0.79375 0.78521 0.76641 1.18270 1.18964 1.19120 1.20800 0.98986 1.07642 0.95005 1.19888 0.91277 1.03038 0.99767 1.22599 0.93348 1.00858 0.92782 0.95261 0.89598 0.90415 0.87193 0.94193 0.92180 0.86689 0.92602 0.90229 0.86422 0.87416 0.90246 0.87149 0.86400 0.87927 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.60 127.69 1.23 1.56 16 2 N -0.55 -10.42 4.99 -921.45 -4.59 -15.02 16 3 C 0.02 0.32 5.66 86.31 0.49 0.81 16 4 C 0.05 1.13 7.01 72.01 0.50 1.64 16 5 O -0.40 -11.98 10.44 -144.55 -1.51 -13.49 16 6 C 0.10 2.87 3.08 30.63 0.09 2.97 16 7 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 8 C 0.07 2.35 4.40 71.98 0.32 2.67 16 9 O -0.33 -13.97 10.09 -85.46 -0.86 -14.83 16 10 C 0.00 -0.10 6.71 22.79 0.15 0.06 16 11 C -0.18 -8.47 8.96 22.11 0.20 -8.27 16 12 C -0.15 -8.33 8.64 22.49 0.19 -8.14 16 13 C 0.05 3.03 5.57 -21.28 -0.12 2.91 16 14 C -0.50 -27.40 9.04 23.40 0.21 -27.19 16 15 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 16 C 0.03 1.72 5.13 85.24 0.44 2.16 16 17 N -0.83 -43.88 10.96 21.82 0.24 -43.64 16 18 Si 0.98 38.69 29.60 68.60 2.03 40.72 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.20 -10.46 9.74 22.48 0.22 -10.24 16 23 C -0.12 -5.80 9.92 22.11 0.22 -5.58 16 24 C 0.03 0.70 4.95 86.31 0.43 1.13 16 25 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.87 7.64 -2.39 -0.02 1.86 16 33 H 0.08 2.42 7.66 -2.39 -0.02 2.41 16 34 H 0.12 4.93 6.27 -2.91 -0.02 4.91 16 35 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 36 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 37 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 38 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -64.27 327.28 0.89 -63.38 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 1.01 Total: 26.40 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 4.57 Total: -43.52 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -4.35 Total: -58.66 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -2.37 Total: -28.32 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -64.27 0.89 -63.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092056299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.967 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds