Wall clock time and date at job start Mon Mar 30 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47072 * 293.95488 * 3 2 1 5 5 C 1.50696 * 109.47198 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00511 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99530 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00453 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47156 * 89.99325 * 9 7 5 11 11 H 1.48500 * 109.47207 * 209.99693 * 9 7 5 12 12 H 1.48502 * 109.46822 * 329.99438 * 9 7 5 13 13 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 14 14 C 1.53006 * 109.46682 * 66.04945 * 13 2 1 15 15 H 1.08997 * 109.70436 * 304.99558 * 14 13 2 16 16 C 1.53468 * 109.70371 * 184.41622 * 14 13 2 17 17 O 1.43187 * 108.23811 * 180.57879 * 16 14 13 18 18 C 1.36100 * 116.70157 * 46.23043 * 17 16 14 19 19 C 1.38709 * 119.39668 * 162.74203 * 18 17 16 20 20 C 1.38196 * 120.06588 * 179.84673 * 19 18 17 21 21 C 1.38254 * 120.11445 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.11267 * 0.06753 * 21 20 19 23 23 C 1.38705 * 120.06754 * 0.03773 * 22 21 20 24 24 O 1.36131 * 119.37914 * 179.72083 * 23 22 21 25 25 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 26 26 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 28 28 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 29 29 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 30 30 H 1.09002 * 109.46936 * 299.99708 * 4 3 2 31 31 H 1.08996 * 109.47340 * 60.00144 * 4 3 2 32 32 H 0.97001 * 119.99851 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46988 * 186.04548 * 13 2 1 34 34 H 1.08996 * 109.46945 * 306.05035 * 13 2 1 35 35 H 1.08998 * 109.71082 * 300.26084 * 16 14 13 36 36 H 1.08998 * 109.71660 * 60.85119 * 16 14 13 37 37 H 1.07997 * 119.96626 * 359.87091 * 19 18 17 38 38 H 1.07998 * 119.94431 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.94371 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.96844 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1718 3.4642 -1.3185 6 1 2.7198 3.8324 -0.4637 7 6 1.9659 4.2817 -2.4095 8 7 1.2981 3.8336 -3.4502 9 14 2.6352 6.0257 -2.4096 10 1 4.0069 6.0294 -2.9784 11 1 1.7555 6.8935 -3.2331 12 1 2.6753 6.5405 -1.0172 13 6 1.9955 -0.7659 1.1376 14 6 1.6316 -2.2426 0.9703 15 1 0.5538 -2.3433 0.8429 16 6 2.0823 -3.0301 2.2080 17 8 1.7395 -4.4065 2.0128 18 6 2.0480 -4.9479 0.8028 19 6 2.0827 -6.3275 0.6631 20 6 2.3912 -6.8920 -0.5600 21 6 2.6656 -6.0838 -1.6476 22 6 2.6336 -4.7086 -1.5150 23 6 2.3268 -4.1355 -0.2897 24 8 2.3049 -2.7793 -0.1735 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.5610 1.9274 0.8308 29 1 3.0796 1.3445 0.1082 30 1 2.0657 1.5016 -2.1492 31 1 0.5471 2.0845 -1.4265 32 1 1.1536 4.4086 -4.2179 33 1 3.0798 -0.6610 1.1755 34 1 1.5611 -0.3872 2.0627 35 1 3.1609 -2.9340 2.3322 36 1 1.5748 -2.6462 3.0930 37 1 1.8679 -6.9611 1.5109 38 1 2.4172 -7.9664 -0.6666 39 1 2.9060 -6.5279 -2.6022 40 1 2.8480 -4.0794 -2.3663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096905398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:16 Heat of formation + Delta-G solvation = -43.891899 kcal Electronic energy + Delta-G solvation = -21212.563724 eV Core-core repulsion = 17993.042087 eV Total energy + Delta-G solvation = -3219.521637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30798 -38.14627 -37.41185 -36.71598 -33.25238 -31.89975 -30.71907 -29.61059 -28.66339 -26.79649 -25.59801 -23.92350 -22.85091 -21.99751 -20.51687 -19.96133 -18.71259 -17.59475 -16.87476 -16.44661 -15.51925 -15.32975 -15.00843 -14.78260 -14.54687 -14.42452 -14.18361 -13.90512 -13.79099 -13.47456 -12.73245 -12.59352 -12.18316 -12.00746 -11.89571 -11.66156 -11.30433 -11.26148 -11.11391 -10.92506 -10.69636 -10.58494 -10.38287 -9.87531 -9.38882 -9.12681 -8.71603 -8.33213 -8.10149 -7.78833 -5.99400 -4.02030 1.21395 1.25205 2.95902 3.16463 3.32072 3.38150 3.40861 3.65812 3.95891 4.38615 4.49394 4.66628 4.70000 4.79586 4.90537 5.03891 5.17498 5.22306 5.32704 5.36436 5.37826 5.47599 5.68586 5.75261 5.81832 5.89719 6.06327 6.14417 6.21682 6.37509 6.38036 6.48225 6.55642 6.88853 6.94270 7.41993 7.42323 7.51135 7.76456 7.89105 8.08038 8.42736 9.05193 9.61510 11.11964 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.003315 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.189753 B = 8444.880528 C = 8993.071267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.534 5.534 3 C 0.064 3.936 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.062 3.938 14 C 0.057 3.943 15 H 0.086 0.914 16 C 0.026 3.974 17 O -0.309 6.309 18 C 0.041 3.959 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.115 4.115 23 C 0.059 3.941 24 O -0.280 6.280 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -19.574 9.735 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.063 4.063 4 C -0.009 4.009 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.067 4.067 14 C 0.000 4.000 15 H 0.103 0.897 16 C -0.050 4.050 17 O -0.224 6.224 18 C -0.004 4.004 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.133 4.133 23 C 0.014 3.986 24 O -0.193 6.193 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.828 -19.668 9.171 21.717 hybrid contribution 0.015 1.544 0.765 1.723 sum 0.843 -18.124 9.936 20.686 Atomic orbital electron populations 1.22460 0.88020 1.00480 1.01616 1.62040 1.07539 1.16171 1.40031 1.22378 0.98615 0.84632 1.00635 1.19089 0.96934 0.94006 0.90894 1.21183 1.35209 0.97786 1.01989 0.92823 1.24994 0.95275 0.98473 0.95571 1.69974 1.40692 1.36459 1.06019 0.86595 0.78884 0.84568 0.77937 1.20619 1.21227 1.19960 1.22037 1.01729 0.89407 0.93528 1.23280 0.97356 0.94753 0.84621 0.89670 1.23658 1.02055 0.80030 0.99301 1.86277 1.78763 1.26455 1.30866 1.18966 1.03943 0.93055 0.84406 1.20396 1.03132 0.91126 0.98850 1.20861 1.01435 0.99890 0.92143 1.20925 1.00909 0.92449 0.99157 1.20555 1.02615 0.95015 0.95162 1.19122 1.02302 0.83551 0.93667 1.86550 1.72451 1.15829 1.44513 0.89965 0.92733 0.96190 0.96112 0.92003 0.95604 0.96445 0.92984 0.89656 0.92932 0.90380 0.86164 0.85178 0.85368 0.85224 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.13 60.07 0.55 0.92 16 2 N -0.53 -9.70 4.72 -242.92 -1.15 -10.85 16 3 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 4 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 6 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 0.87 4.65 -3.82 -0.02 0.85 16 14 C 0.06 0.76 2.97 -26.49 -0.08 0.68 16 15 H 0.09 1.15 6.28 -51.93 -0.33 0.82 16 16 C 0.03 0.28 6.56 37.40 0.25 0.52 16 17 O -0.31 -3.96 10.42 -32.81 -0.34 -4.30 16 18 C 0.04 0.55 6.49 -39.13 -0.25 0.29 16 19 C -0.12 -1.28 9.96 -39.42 -0.39 -1.68 16 20 C -0.13 -1.20 10.04 -39.59 -0.40 -1.60 16 21 C -0.12 -1.19 10.04 -39.59 -0.40 -1.59 16 22 C -0.11 -1.47 9.96 -39.42 -0.39 -1.86 16 23 C 0.06 0.85 6.49 -39.14 -0.25 0.60 16 24 O -0.28 -4.45 10.03 -32.91 -0.33 -4.78 16 25 H 0.08 1.55 6.47 -51.93 -0.34 1.21 16 26 H 0.05 0.80 6.21 -51.93 -0.32 0.48 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.48 6.55 -51.93 -0.34 0.14 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 34 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -32.17 328.46 -9.03 -41.20 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.92 Total: -2.12 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.96 Total: -14.52 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.41 Total: -37.10 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.67 Total: -9.08 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.17 -9.03 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096905398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.692 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds