Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47072 * 293.95488 * 3 2 1 5 5 C 1.50696 * 109.47198 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00511 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99530 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00453 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47156 * 89.99325 * 9 7 5 11 11 H 1.48500 * 109.47207 * 209.99693 * 9 7 5 12 12 H 1.48502 * 109.46822 * 329.99438 * 9 7 5 13 13 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 14 14 C 1.53006 * 109.46682 * 66.04945 * 13 2 1 15 15 H 1.08997 * 109.70436 * 304.99558 * 14 13 2 16 16 C 1.53468 * 109.70371 * 184.41622 * 14 13 2 17 17 O 1.43187 * 108.23811 * 180.57879 * 16 14 13 18 18 C 1.36100 * 116.70157 * 46.23043 * 17 16 14 19 19 C 1.38709 * 119.39668 * 162.74203 * 18 17 16 20 20 C 1.38196 * 120.06588 * 179.84673 * 19 18 17 21 21 C 1.38254 * 120.11445 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.11267 * 0.06753 * 21 20 19 23 23 C 1.38705 * 120.06754 * 0.03773 * 22 21 20 24 24 O 1.36131 * 119.37914 * 179.72083 * 23 22 21 25 25 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 26 26 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 28 28 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 29 29 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 30 30 H 1.09002 * 109.46936 * 299.99708 * 4 3 2 31 31 H 1.08996 * 109.47340 * 60.00144 * 4 3 2 32 32 H 0.97001 * 119.99851 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46988 * 186.04548 * 13 2 1 34 34 H 1.08996 * 109.46945 * 306.05035 * 13 2 1 35 35 H 1.08998 * 109.71082 * 300.26084 * 16 14 13 36 36 H 1.08998 * 109.71660 * 60.85119 * 16 14 13 37 37 H 1.07997 * 119.96626 * 359.87091 * 19 18 17 38 38 H 1.07998 * 119.94431 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.94371 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.96844 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1718 3.4642 -1.3185 6 1 2.7198 3.8324 -0.4637 7 6 1.9659 4.2817 -2.4095 8 7 1.2981 3.8336 -3.4502 9 14 2.6352 6.0257 -2.4096 10 1 4.0069 6.0294 -2.9784 11 1 1.7555 6.8935 -3.2331 12 1 2.6753 6.5405 -1.0172 13 6 1.9955 -0.7659 1.1376 14 6 1.6316 -2.2426 0.9703 15 1 0.5538 -2.3433 0.8429 16 6 2.0823 -3.0301 2.2080 17 8 1.7395 -4.4065 2.0128 18 6 2.0480 -4.9479 0.8028 19 6 2.0827 -6.3275 0.6631 20 6 2.3912 -6.8920 -0.5600 21 6 2.6656 -6.0838 -1.6476 22 6 2.6336 -4.7086 -1.5150 23 6 2.3268 -4.1355 -0.2897 24 8 2.3049 -2.7793 -0.1735 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.5610 1.9274 0.8308 29 1 3.0796 1.3445 0.1082 30 1 2.0657 1.5016 -2.1492 31 1 0.5471 2.0845 -1.4265 32 1 1.1536 4.4086 -4.2179 33 1 3.0798 -0.6610 1.1755 34 1 1.5611 -0.3872 2.0627 35 1 3.1609 -2.9340 2.3322 36 1 1.5748 -2.6462 3.0930 37 1 1.8679 -6.9611 1.5109 38 1 2.4172 -7.9664 -0.6666 39 1 2.9060 -6.5279 -2.6022 40 1 2.8480 -4.0794 -2.3663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096905398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = -64.697483 kcal Electronic energy + Delta-G solvation = -21213.465922 eV Core-core repulsion = 17993.042087 eV Total energy + Delta-G solvation = -3220.423835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.25200 -39.25708 -38.38324 -37.94751 -35.26228 -33.21857 -31.61435 -31.25654 -29.72978 -28.06414 -27.14925 -25.35621 -23.85893 -23.28885 -21.67855 -21.47700 -19.69672 -18.69923 -18.39835 -17.78025 -16.72119 -16.57610 -16.30570 -16.22097 -15.82205 -15.56639 -15.27192 -15.06493 -14.81868 -14.58441 -14.33978 -14.15005 -13.68227 -13.29960 -12.95111 -12.81766 -12.78158 -12.69351 -12.62496 -12.40469 -12.10841 -11.88434 -11.74135 -11.52135 -11.30583 -11.12702 -10.54892 -9.60811 -9.20110 -9.03040 -8.20272 -6.31998 0.33164 0.36588 1.39890 1.41843 1.52588 2.05261 2.25759 2.39639 2.77938 2.85048 3.13132 3.37383 3.69693 3.70575 3.77751 4.15292 4.19223 4.23496 4.29448 4.36892 4.41407 4.46842 4.49183 4.60694 4.63418 4.69684 4.75210 4.93604 5.00815 5.08562 5.23933 5.26103 5.44906 5.54265 5.63661 5.75532 5.77202 5.96738 6.06408 6.23657 6.30365 6.48625 6.85644 7.37218 8.92038 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.003315 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.189753 B = 8444.880528 C = 8993.071267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.556 5.556 3 C 0.081 3.919 4 C 0.035 3.965 5 C -0.544 4.544 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.261 1.261 13 C 0.065 3.935 14 C 0.057 3.943 15 H 0.080 0.920 16 C 0.030 3.970 17 O -0.316 6.316 18 C 0.024 3.976 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.137 4.137 23 C 0.029 3.971 24 O -0.312 6.312 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.063 0.937 30 H -0.014 1.014 31 H -0.005 1.005 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 -20.596 11.481 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.280 5.280 3 C -0.046 4.046 4 C -0.002 4.002 5 C -0.583 4.583 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.573 5.573 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.185 1.185 13 C -0.063 4.063 14 C 0.000 4.000 15 H 0.098 0.902 16 C -0.046 4.046 17 O -0.231 6.231 18 C -0.021 4.021 19 C -0.139 4.139 20 C -0.133 4.133 21 C -0.130 4.130 22 C -0.155 4.155 23 C -0.016 4.016 24 O -0.227 6.227 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.005 0.995 31 H 0.013 0.987 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.175 0.825 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.342 -20.711 10.938 23.460 hybrid contribution -0.158 1.734 0.176 1.750 sum 1.184 -18.977 11.114 22.023 Atomic orbital electron populations 1.22378 0.87339 1.01494 1.00783 1.61869 1.08374 1.14700 1.43062 1.21982 0.98768 0.86146 0.97664 1.18918 0.95054 0.93691 0.92537 1.21636 1.35324 0.98852 1.02460 0.91938 1.26000 0.95409 1.03398 0.95044 1.70123 1.41989 1.38346 1.06816 0.85406 0.78205 0.78574 0.78594 1.19828 1.20765 1.18504 1.22100 1.01733 0.89395 0.93058 1.23302 0.96946 0.94356 0.85372 0.90208 1.23795 1.02785 0.78971 0.99014 1.86256 1.79009 1.27199 1.30661 1.19237 1.04632 0.93919 0.84280 1.20794 1.02407 0.90465 1.00215 1.21317 0.99245 1.01643 0.91093 1.21289 0.99646 0.91345 1.00768 1.20761 1.03668 0.96396 0.94709 1.19413 1.04227 0.83147 0.94831 1.86486 1.73197 1.17088 1.45938 0.93181 0.90782 0.94525 0.95222 0.91840 0.99527 0.98664 0.92788 0.89678 0.89903 0.89918 0.82892 0.83145 0.81727 0.82489 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.13 127.69 1.17 2.11 16 2 N -0.56 -20.41 4.72 -922.46 -4.36 -24.76 16 3 C 0.08 3.46 4.90 86.30 0.42 3.88 16 4 C 0.04 1.94 4.90 29.85 0.15 2.08 16 5 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 6 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 9 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 13 C 0.06 1.76 4.65 86.31 0.40 2.16 16 14 C 0.06 1.48 2.97 30.75 0.09 1.57 16 15 H 0.08 2.11 6.28 -2.39 -0.01 2.10 16 16 C 0.03 0.60 6.56 72.14 0.47 1.07 16 17 O -0.32 -7.67 10.42 -82.49 -0.86 -8.53 16 18 C 0.02 0.62 6.49 22.56 0.15 0.77 16 19 C -0.12 -2.40 9.96 22.37 0.22 -2.18 16 20 C -0.12 -1.89 10.04 22.26 0.22 -1.66 16 21 C -0.11 -2.12 10.04 22.26 0.22 -1.90 16 22 C -0.14 -3.55 9.96 22.37 0.22 -3.33 16 23 C 0.03 0.85 6.49 22.56 0.15 0.99 16 24 O -0.31 -10.22 10.03 -82.84 -0.83 -11.05 16 25 H 0.05 1.99 6.47 -2.38 -0.02 1.97 16 26 H 0.07 2.18 6.21 -2.39 -0.01 2.16 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.03 1.20 8.12 -2.39 -0.02 1.18 16 29 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 30 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 31 H 0.00 -0.29 6.55 -2.39 -0.02 -0.30 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.08 2.30 7.93 -2.39 -0.02 2.29 16 34 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -72.13 328.46 1.86 -70.27 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.02 Total: 10.33 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 4.58 Total: -25.21 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -4.07 Total: -82.48 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.69 Total: -19.58 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -72.13 1.86 -70.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096905398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.572 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds