Wall clock time and date at job start Mon Mar 30 2020 01:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47507 * 2 1 4 4 C 1.46500 * 120.00282 * 272.43374 * 3 2 1 5 5 C 1.50698 * 109.46982 * 270.00168 * 4 3 2 6 6 H 1.07997 * 120.00200 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31505 * 119.99865 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47177 * 89.99993 * 9 7 5 11 11 H 1.48496 * 109.47183 * 210.00418 * 9 7 5 12 12 H 1.48504 * 109.46888 * 330.00088 * 9 7 5 13 13 C 1.34782 * 119.99888 * 92.43338 * 3 2 1 14 14 O 1.21280 * 119.99732 * 185.25528 * 13 3 2 15 15 C 1.50697 * 119.99897 * 5.25860 * 13 3 2 16 16 H 1.09001 * 109.46932 * 314.59859 * 15 13 3 17 17 C 1.52999 * 109.47441 * 74.59986 * 15 13 3 18 18 O 1.42895 * 109.47116 * 194.60059 * 15 13 3 19 19 C 1.35900 * 117.00192 * 156.57766 * 18 15 13 20 20 C 1.38726 * 120.05788 * 357.78339 * 19 18 15 21 21 C 1.38145 * 119.94699 * 179.74789 * 20 19 18 22 22 C 1.38269 * 120.05167 * 0.50001 * 21 20 19 23 23 C 1.38261 * 120.11313 * 359.77006 * 22 21 20 24 24 C 1.38148 * 120.05576 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47140 * 300.00392 * 1 2 3 26 26 H 1.09001 * 109.46799 * 59.99544 * 1 2 3 27 27 H 1.08991 * 109.47791 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46662 * 239.99612 * 2 1 3 29 29 H 1.09001 * 109.46799 * 120.00455 * 2 1 3 30 30 H 1.09001 * 109.46860 * 29.99647 * 4 3 2 31 31 H 1.08997 * 109.47427 * 150.00289 * 4 3 2 32 32 H 0.96997 * 120.00196 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47172 * 295.18950 * 17 15 13 34 34 H 1.08994 * 109.47260 * 175.19305 * 17 15 13 35 35 H 1.09002 * 109.47095 * 55.18619 * 17 15 13 36 36 H 1.07999 * 120.02527 * 359.97438 * 20 19 18 37 37 H 1.07992 * 119.97338 * 180.23331 * 21 20 19 38 38 H 1.08002 * 119.94112 * 179.75444 * 22 21 20 39 39 H 1.08004 * 119.97215 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.02421 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2118 2.0897 -1.2676 5 6 3.6165 1.8594 -1.7625 6 1 4.2971 1.2468 -1.1900 7 6 4.0326 2.4307 -2.9464 8 7 3.2040 3.1770 -3.6433 9 14 5.7740 2.1458 -3.5596 10 1 5.8038 0.9366 -4.4209 11 1 6.2213 3.3241 -4.3448 12 1 6.6812 1.9502 -2.4002 13 6 2.2898 1.9999 1.1662 14 8 2.6023 3.1717 1.1725 15 6 2.2049 1.2357 2.4623 16 1 1.2889 0.6452 2.4765 17 6 3.4134 0.3055 2.5860 18 8 2.1967 2.1540 3.5570 19 6 1.6486 1.7200 4.7224 20 6 1.0880 0.4532 4.7972 21 6 0.5361 0.0123 5.9843 22 6 0.5328 0.8364 7.0946 23 6 1.0859 2.1015 7.0211 24 6 1.6438 2.5450 5.8377 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5011 1.7162 -2.0047 31 1 2.0507 3.1569 -1.1155 32 1 3.4968 3.5793 -4.4759 33 1 3.3733 -0.4487 1.8000 34 1 3.3972 -0.1836 3.5599 35 1 4.3305 0.8860 2.4860 36 1 1.0863 -0.1891 3.9290 37 1 0.1029 -0.9751 6.0441 38 1 0.0973 0.4914 8.0208 39 1 1.0818 2.7434 7.8897 40 1 2.0753 3.5334 5.7808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103207763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:22 Heat of formation + Delta-G solvation = -44.427948 kcal Electronic energy + Delta-G solvation = -21677.588209 eV Core-core repulsion = 18458.043327 eV Total energy + Delta-G solvation = -3219.544882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50408 -39.00011 -37.20319 -35.36930 -32.98380 -31.91936 -30.84484 -30.16904 -29.65428 -27.20078 -24.69372 -23.23330 -22.99059 -22.53832 -21.39883 -18.64889 -18.41430 -16.53961 -16.44647 -16.24405 -15.73165 -15.40443 -15.06070 -14.46010 -14.35241 -14.24343 -13.59429 -13.43661 -13.22193 -12.92128 -12.84555 -12.37329 -12.18028 -12.09076 -11.77577 -11.67866 -11.56789 -11.25163 -11.07234 -10.92409 -10.78000 -10.65502 -10.54780 -10.15612 -9.67359 -9.10596 -8.92759 -8.46188 -8.20825 -7.74278 -6.07010 -4.12255 1.23953 1.37964 2.94489 3.24676 3.28552 3.35803 3.40618 3.70801 4.02779 4.42045 4.66848 4.74014 4.82380 4.90455 5.04189 5.07519 5.21180 5.27490 5.27547 5.35849 5.50435 5.54170 5.62927 5.65118 5.74593 5.91397 5.93990 6.16219 6.17923 6.26318 6.31241 6.42427 6.42707 6.68588 6.98937 7.40042 7.41599 7.51449 7.89209 8.19282 8.30762 8.84417 8.99802 9.52940 11.01110 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.004109 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.703494 B = 6812.503715 C = 7145.956097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.513 3.487 14 O -0.519 6.519 15 C 0.064 3.936 16 H 0.090 0.910 17 C -0.174 4.174 18 O -0.283 6.283 19 C 0.138 3.862 20 C -0.215 4.215 21 C -0.080 4.080 22 C -0.167 4.167 23 C -0.081 4.081 24 C -0.154 4.154 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 -9.712 17.018 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.297 3.703 14 O -0.394 6.394 15 C 0.004 3.996 16 H 0.108 0.892 17 C -0.231 4.231 18 O -0.195 6.195 19 C 0.092 3.908 20 C -0.234 4.234 21 C -0.098 4.098 22 C -0.185 4.185 23 C -0.099 4.099 24 C -0.173 4.173 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.986 -8.761 16.762 19.838 hybrid contribution 0.843 -0.450 -0.532 1.093 sum -5.143 -9.210 16.230 19.357 Atomic orbital electron populations 1.22235 0.96586 1.01571 1.02544 1.21611 0.93793 0.84291 1.03000 1.48160 1.63668 1.13428 1.07238 1.19320 0.96692 0.93516 0.77620 1.21431 0.97661 1.31512 1.06249 0.92379 1.24934 0.97727 0.94833 0.96543 1.69926 1.35428 1.32572 1.15273 0.86491 0.84460 0.77680 0.78768 1.20623 1.21050 1.19865 1.19714 0.78981 0.87451 0.84134 1.90702 1.46439 1.15824 1.86424 1.22406 1.00454 0.90846 0.85879 0.89210 1.22324 0.98336 0.99431 1.03057 1.86261 1.74956 1.40624 1.17685 1.19185 0.92398 0.92776 0.86489 1.21320 1.05547 0.96660 0.99864 1.20922 0.97297 0.99308 0.92249 1.21021 1.03649 0.94991 0.98882 1.20953 0.96314 0.95880 0.96741 1.20499 1.04885 1.00732 0.91135 0.93190 0.91705 0.91948 0.89553 0.91487 0.94704 0.93667 0.92654 0.89859 0.91239 0.90515 0.85283 0.85938 0.86154 0.85520 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.19 37.16 0.38 -1.86 16 2 C 0.10 1.49 5.68 -4.05 -0.02 1.47 16 3 N -0.59 -12.37 2.46 -175.07 -0.43 -12.80 16 4 C 0.25 6.41 5.21 -5.19 -0.03 6.38 16 5 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.51 11.05 6.96 -10.98 -0.08 10.97 16 14 O -0.52 -13.80 16.12 -13.92 -0.22 -14.02 16 15 C 0.06 1.04 1.80 -27.88 -0.05 0.99 16 16 H 0.09 1.22 4.71 -51.93 -0.24 0.97 16 17 C -0.17 -2.41 8.94 37.16 0.33 -2.08 16 18 O -0.28 -4.98 9.38 -38.90 -0.36 -5.35 16 19 C 0.14 1.98 6.52 -39.22 -0.26 1.73 16 20 C -0.22 -2.56 8.32 -39.44 -0.33 -2.89 16 21 C -0.08 -0.80 10.04 -39.60 -0.40 -1.20 16 22 C -0.17 -1.60 10.04 -39.56 -0.40 -2.00 16 23 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 24 C -0.15 -1.98 9.99 -39.43 -0.39 -2.37 16 25 H 0.05 0.64 7.76 -51.93 -0.40 0.24 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 29 H 0.07 0.83 4.48 -51.93 -0.23 0.60 16 30 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.03 6.18 -51.93 -0.32 0.71 16 34 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.13 1.36 5.70 -52.49 -0.30 1.06 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -33.78 333.12 -7.95 -41.72 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.61 Total: 0.02 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.06 Total: -5.59 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.31 Total: -38.47 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.59 Total: -19.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.78 -7.95 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.706 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds